mRNA_A-nodosum_M_contig1129.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1129.4.1
Unique NamemRNA_A-nodosum_M_contig1129.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1129.4.1 vs. uniprot
Match: A0A1R3JQF5_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JQF5_COCAP)

HSP 1 Score: 103 bits (258), Expect = 9.130e-24
Identity = 53/108 (49.07%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:    1 EPTTLHEAKVSPEWPQWRGALKHEMDGEIARGVWKVVDRPQKSNVLGTKTVFKRKVGRDGRVESYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 324
            EPTT  EA   PE  +W  A+K EMD   A  VW +VD P+    +G K +FK+K   DG V +YK RFVAKGFRQI G+ Y E+ SP     SIR+ LA+ A  D+E
Sbjct:  397 EPTTYQEAVAGPESEKWLEAMKSEMDSMYANQVWTLVDPPKGIKPIGCKWLFKKKTDMDGNVHTYKGRFVAKGFRQIHGVDYDETFSPVAMLKSIRILLAIAAFYDYE 504
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BLAST of mRNA_A-nodosum_M_contig1129.4.1 vs. uniprot
Match: A0A8J5YBS1_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YBS1_9ROSI)

HSP 1 Score: 102 bits (253), Expect = 5.670e-23
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1 
Query:    1 EPTTLHEAKVSPEWPQWRGALKHEMDGEIARGVWKVVDRPQKSNVLGTKTVFKRKVGRDGRVESYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 324
            EP T  EA  SPE  +W  AL+ EMD      VW +VD P+    +G K VFK+K+  DG V++YK R VAKGFRQI G++Y E+ SP     SIR++LA+ A  D+E
Sbjct:  445 EPRTYQEAVASPESEKWLEALRSEMDSMYENQVWTLVDPPKGVKPIGCKWVFKKKIDMDGNVQTYKGRLVAKGFRQIHGVNYDETFSPVAMFKSIRISLAIAAFHDYE 552
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BLAST of mRNA_A-nodosum_M_contig1129.4.1 vs. uniprot
Match: UPI001C988E4D (hypothetical protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001C988E4D)

HSP 1 Score: 99.8 bits (247), Expect = 7.670e-23
Identity = 47/108 (43.52%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:    1 EPTTLHEAKVSPEWPQWRGALKHEMDGEIARGVWKVVDRPQKSNVLGTKTVFKRKVGRDGRVESYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 324
            +PTT   A +  +  +W+ A+K EMD   + GVW +VD P+    +G K ++KRK+G DG+VE+YK R VAKG+ Q +G+ Y+E+ SP     SIR+ LA+ A  D+E
Sbjct:   88 DPTTYEGAMLDIDSSRWQEAMKSEMDSMYSNGVWTLVDPPEGIVPIGCKWIYKRKIGSDGKVETYKARLVAKGYNQKQGVDYEETFSPVAMLKSIRILLAIAAYYDYE 195
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BLAST of mRNA_A-nodosum_M_contig1129.4.1 vs. uniprot
Match: UPI0011327E8C (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI0011327E8C)

HSP 1 Score: 95.9 bits (237), Expect = 1.470e-22
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 EPTTLHEAKVSPEWPQWRGALKHEMDGEIARGVWKVVDRPQKSNVLGTKTVFKRKVGRDGRVESYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 324
            +P T  EA    +  +W  A+K E+D      VW +VD P+    +G K VFK+K+G DG+VE+YK R VAKGFRQ +GI Y+E+ SP     SIR+ LA+ A  D+E
Sbjct:   54 DPLTYEEAISDIDSSKWIDAMKSEIDSMYKNQVWDLVDPPEGIVPIGNKWVFKKKIGSDGKVETYKARLVAKGFRQRQGIDYEETFSPVAMLKSIRILLAIAAYYDYE 161
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BLAST of mRNA_A-nodosum_M_contig1129.4.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 93.2 bits (230), Expect = 6.010e-22
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:    1 EPTTLHEAKVSPEWPQWRGALKHEMDGEIARGVWKVVDRPQKSNVLGTKTVFKRKVGRDGRVESYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 324
            +P TL EA  SP+  +W+ A++ E++       W +V RP+   V+  K VFKRK+ +DG+VE YK R VA+G+ Q++GI Y+E+ SP     SIR  LA     DW+
Sbjct:   30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQ 137
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BLAST of mRNA_A-nodosum_M_contig1129.4.1 vs. uniprot
Match: UPI000D464853 (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI000D464853)

HSP 1 Score: 95.9 bits (237), Expect = 9.240e-22
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 EPTTLHEAKVSPEWPQWRGALKHEMDGEIARGVWKVVDRPQKSNVLGTKTVFKRKVGRDGRVESYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 324
            +P T  EA    +  +W  A+K E+D      VW +VD P+    +G K VFK+K+G DG+VE+YK R VAKGFRQ +GI Y+E+ SP     SIR+ LA+ A  D+E
Sbjct:   59 DPLTYEEAISDIDSSKWIDAMKSEIDSMYKNQVWDLVDPPEGIVPIGNKWVFKKKIGSDGKVETYKARLVAKGFRQRQGIDYEETFSPVAMLKSIRILLAIAAYYDYE 166
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BLAST of mRNA_A-nodosum_M_contig1129.4.1 vs. uniprot
Match: A0A2I0IJP3_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IJP3_PUNGR)

HSP 1 Score: 97.4 bits (241), Expect = 1.090e-21
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 1 
Query:    1 EPTTLHEAKVSPEWPQWRGALKHEMDGEIARGVWKVVDRPQKSNVLGTKTVFKRKVGRDGRVESYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 324
            +PTT  EA    +  +W  A+K EMD      VW +VD P+    +G K VFKRK+G DG+VE+YK R VAKG+RQ +G+ Y+E+ SP     S+R+ LA+ A  D+E
Sbjct:   75 DPTTYEEAISDIDSSKWLEAMKSEMDSMSKNQVWDLVDPPEGIVPIGNKWVFKRKIGADGKVETYKARLVAKGYRQKQGVDYEETFSPVAMLKSLRIMLAIAAHYDYE 182
[Close]
BLAST of mRNA_A-nodosum_M_contig1129.4.1 vs. uniprot
Match: A0A2I0J8X0_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0J8X0_PUNGR)

HSP 1 Score: 96.3 bits (238), Expect = 1.330e-21
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 EPTTLHEAKVSPEWPQWRGALKHEMDGEIARGVWKVVDRPQKSNVLGTKTVFKRKVGRDGRVESYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 324
            EPTT  EA + P+  +W  A++ EM+      VW +VD P+ + ++G K VFK+K   DG V ++K R VAKGFRQ+ G+ Y E+ SP     SIR+ LA+ A  D+E
Sbjct:   71 EPTTYAEAVIGPDSEKWLVAMRSEMESMYTNQVWTLVDPPEGAKLIGYKWVFKKKTDMDGNVITFKRRLVAKGFRQVHGVDYDETFSPVAMLKSIRILLAIAAYYDYE 178
[Close]
BLAST of mRNA_A-nodosum_M_contig1129.4.1 vs. uniprot
Match: A0A6P4M1H2_GOSAR (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4M1H2_GOSAR)

HSP 1 Score: 92.0 bits (227), Expect = 1.390e-21
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:    1 EPTTLHEAKVSPEWPQWRGALKHEMDGEIARGVWKVVDRPQKSNVLGTKTVFKRKVGRDGRVESYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 324
            EP T  EA  SP+  +W  A+  EMD      VW +VD P+    +G K VFK+K   DG VE+Y  R VAKGFRQI G+ Y E+ SP     SIR+ LA+ A  ++E
Sbjct:   36 EPRTDQEAVASPDSEKWLEAMISEMDSMYENQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVETYNGRLVAKGFRQIHGVDYDETFSPVAMFKSIRILLAIAAFHNYE 143
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BLAST of mRNA_A-nodosum_M_contig1129.4.1 vs. uniprot
Match: A0A5N6P523_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P523_9ASTR)

HSP 1 Score: 96.7 bits (239), Expect = 2.170e-21
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 EPTTLHEAKVSPEWPQWRGALKHEMDGEIARGVWKVVDRPQKSNVLGTKTVFKRKVGRDGRVESYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 324
            EP T  EA  S E PQW+ A+K+E+D  +    W++VD P     LG + +FKRK+  DG ++ YK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ AL D E
Sbjct:  240 EPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPSGFKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLMLAIAALRDLE 347
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1129.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1R3JQF5_COCAP9.130e-2449.07Uncharacterized protein n=1 Tax=Corchorus capsular... [more]
A0A8J5YBS1_9ROSI5.670e-2348.15Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
UPI001C988E4D7.670e-2343.52hypothetical protein n=3 Tax=Bacteria TaxID=2 RepI... [more]
UPI0011327E8C1.470e-2245.37hypothetical protein n=1 Tax=Escherichia coli TaxI... [more]
UPI0015A81C6A6.010e-2241.67uncharacterized mitochondrial protein AtMg00820-li... [more]
UPI000D4648539.240e-2245.37hypothetical protein n=1 Tax=Escherichia coli TaxI... [more]
A0A2I0IJP3_PUNGR1.090e-2145.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0J8X0_PUNGR1.330e-2143.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6P4M1H2_GOSAR1.390e-2145.37uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A5N6P523_9ASTR2.170e-2144.44Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1129contigA-nodosum_M_contig1129:185963..186286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog15368.BRADI5G07075.1
PFAMsRVT_2
Model size324
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.61e-19
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37YYP@33090|Viridiplantae,3GQD7@35493|Streptophyta,3M3FD@4447|Liliopsida,3IKKZ@38820|Poales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size324
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866526.9258933-CDS-A-nodosum_M_contig1129:185962..1862861680866526.9258933-CDS-A-nodosum_M_contig1129:185962..186286Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1129 185963..186286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1129.4.1prot_A-nodosum_M_contig1129.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1129 185963..186286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1129.4.1

>prot_A-nodosum_M_contig1129.4.1 ID=prot_A-nodosum_M_contig1129.4.1|Name=mRNA_A-nodosum_M_contig1129.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=108bp
EPTTLHEAKVSPEWPQWRGALKHEMDGEIARGVWKVVDRPQKSNVLGTKT
VFKRKVGRDGRVESYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALA
VMALLDWE
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mRNA from alignment at A-nodosum_M_contig1129:185963..186286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1129.4.1 ID=mRNA_A-nodosum_M_contig1129.4.1|Name=mRNA_A-nodosum_M_contig1129.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at A-nodosum_M_contig1129:185963..186286+ (Ascophyllum nodosum dioecious)
GAGCCCACCACCCTTCACGAGGCTAAGGTGTCCCCCGAGTGGCCGCAATG
GCGCGGCGCGCTCAAGCACGAGATGGACGGCGAGATTGCACGTGGTGTGT
GGAAAGTCGTCGATCGACCCCAAAAATCAAACGTACTCGGCACCAAGACC
GTTTTTAAACGGAAAGTCGGCCGGGATGGCCGTGTAGAAAGTTATAAGTG
CCGCTTCGTGGCCAAGGGTTTCCGCCAGATCAAGGGGATTCATTACCAAG
AGTCATCGTCGCCGACGCCTACACAGTCGAGCATCCGGATGGCGCTGGCG
GTGATGGCCCTGTTGGACTGGGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1129:185963..186286+

>mRNA_A-nodosum_M_contig1129.4.1 ID=mRNA_A-nodosum_M_contig1129.4.1|Name=mRNA_A-nodosum_M_contig1129.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at A-nodosum_M_contig1129:185963..186286+ (Ascophyllum nodosum dioecious)
GAGCCCACCACCCTTCACGAGGCTAAGGTGTCCCCCGAGTGGCCGCAATG
GCGCGGCGCGCTCAAGCACGAGATGGACGGCGAGATTGCACGTGGTGTGT
GGAAAGTCGTCGATCGACCCCAAAAATCAAACGTACTCGGCACCAAGACC
GTTTTTAAACGGAAAGTCGGCCGGGATGGCCGTGTAGAAAGTTATAAGTG
CCGCTTCGTGGCCAAGGGTTTCCGCCAGATCAAGGGGATTCATTACCAAG
AGTCATCGTCGCCGACGCCTACACAGTCGAGCATCCGGATGGCGCTGGCG
GTGATGGCCCTGTTGGACTGGGAG
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