mRNA_A-nodosum_M_contig1129.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1129.3.1
Unique NamemRNA_A-nodosum_M_contig1129.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1129.3.1 vs. uniprot
Match: A0A6H5JA50_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA50_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.660e-17
Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 3 
Query:  168 RETFYEPVYQTFGTTRWLRVEGGRGPRFDPCERMAVFLYRMGHSAGARETAVLFGLSVGAVHYSTISVAKRIKDVLNERYVCWPGRAEPRRISREWE 458
            + TF   V+  FGTT   RV    GP  DPCER+AVFL+R+GH +G R TA  F ++ GAV   T+SVA+RI+  L   YV WP   E   IS  WE
Sbjct:   12 KSTFRRLVHALFGTTYVFRVNN-TGPYIDPCERVAVFLFRVGHGSGVRATASHFNMAEGAVVNWTMSVARRIRKRLLCEYVRWPSPEEQSEISTAWE 107
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BLAST of mRNA_A-nodosum_M_contig1129.3.1 vs. uniprot
Match: D7FRZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ1_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 5.560e-17
Identity = 48/106 (45.28%), Postives = 60/106 (56.60%), Query Frame = 3 
Query:  144 FSTMFRCMRETFYEPVYQTFGTTRWLRVEGGRGPRFDPCERMAVFLYRMGHSAGARETAVLFGLSVGAVHYSTISVAKRIKDVLNERYV-CWPGRAEPRRISREWE 458
            F  +FRCMR TF   V + + T      +GGRGP F PCER A+ LYR+GH AGAR TA LFG+S G V   T     R+   L  R++  WP R +   IS  +E
Sbjct:   38 FMILFRCMRPTFAALVKELYDTLDVRASDGGRGPAFHPCERTAMVLYRLGHGAGARATAALFGVSDGWVTSCTCEFITRVTARLIPRFLWSWPTRNDQDNISAAFE 143
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BLAST of mRNA_A-nodosum_M_contig1129.3.1 vs. uniprot
Match: A0A6H5JSG7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.180e-14
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 3 
Query:  228 EGGRGPRFDPCERMAVFLYRMGHSAGARETAVLFGLSVGAVHYSTISVAKRIKDVLNERYVCWPGRAEPRRISREWE 458
            +G RGP FDPCER+AVF++R+G  +  R+TA+ FGLS G V   T+ VA+R+   L +  V WP   E R +S  WE
Sbjct:    4 KGRRGPPFDPCERVAVFMWRLGGDSTVRQTALQFGLSDGTVSQVTLEVARRVDKYLRDECVWWPSPEEQRDMSAAWE 80
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1129.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JA50_9PHAE1.660e-1748.45DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FRZ1_ECTSI5.560e-1745.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSG7_9PHAE1.180e-1448.05DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1129contigA-nodosum_M_contig1129:143983..144639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size458
Hectar predicted targeting categoryother localisation
Exons2
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866526.8523097-UTR-A-nodosum_M_contig1129:143982..1440561680866526.8523097-UTR-A-nodosum_M_contig1129:143982..144056Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1129 143983..144056 -
1680866526.8894053-UTR-A-nodosum_M_contig1129:144615..1446391680866526.8894053-UTR-A-nodosum_M_contig1129:144615..144639Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1129 144616..144639 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866526.8616266-CDS-A-nodosum_M_contig1129:144056..1442741680866526.8616266-CDS-A-nodosum_M_contig1129:144056..144274Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1129 144057..144274 -
1680866526.8767357-CDS-A-nodosum_M_contig1129:144473..1446151680866526.8767357-CDS-A-nodosum_M_contig1129:144473..144615Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1129 144474..144615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1129.3.1prot_A-nodosum_M_contig1129.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1129 144057..144615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1129.3.1

>prot_A-nodosum_M_contig1129.3.1 ID=prot_A-nodosum_M_contig1129.3.1|Name=mRNA_A-nodosum_M_contig1129.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=120bp
MLDPHDMADLIHGTTRDHKKAVPHPQRFWAREGLHMDSIHFRQCSVACVR
RSTSRFIKRLGQQGGCELKEAAVRVLTHVNVWPYSCIGWDIPLGRVKQRF
YLACPWARSTTLRYQLRSA*
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mRNA from alignment at A-nodosum_M_contig1129:143983..144639-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1129.3.1 ID=mRNA_A-nodosum_M_contig1129.3.1|Name=mRNA_A-nodosum_M_contig1129.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=657bp|location=Sequence derived from alignment at A-nodosum_M_contig1129:143983..144639- (Ascophyllum nodosum dioecious)
GAAGACTTCATCAAACTGTTAGGGATGCTCGACCCGCACGACATGGCAGA
TCTTATTCATGGCACGACCCGAGACCACAAGAAGGCTGTACCACACCCAC
AGCGGTTTTGGGCACGTGAAGGTCTACACATGGATTCCATACATTTTCGA
CAATGTTCCGTTGCATGTGAGGACATACTGAAACAGGAACGTTGATAGAC
ATGCGTTGCGTAGTAGCCTGATGGAAGTAAGCAAGTTCCACATCCTTTTA
AGCACTATAAAATATTGTTATGTGCCAAGGCACATCCGCGTGGCGTTTCT
GTTCTGAACTAAGACAGGATGCTTTCAAACCTCTCATTCGCACGTGACGT
ATGCACCGCAAACAGGCGTGAGACGTTCTACGAGCCGGTTTATCAAACGT
TTGGGACAACAAGGTGGTTGCGAGTTGAAGGAGGCCGCGGTCCGCGTTTT
GACCCATGTGAACGTATGGCCGTATTCCTGTATCGGATGGGACATTCCGC
TGGGGCGCGTGAAACAGCGGTTTTATTTGGCTTGTCCGTGGGCGCGGTCC
ACTACTCTACGATATCAGTTGCGAAGCGCATAAAAGACGTGTTGAATGAA
CGATATGTCTGCTGGCCTGGTCGGGCCGAGCCGCGACGCATCTCGCGAGA
GTGGGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1129:143983..144639-

>mRNA_A-nodosum_M_contig1129.3.1 ID=mRNA_A-nodosum_M_contig1129.3.1|Name=mRNA_A-nodosum_M_contig1129.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at A-nodosum_M_contig1129:143983..144639- (Ascophyllum nodosum dioecious)
ATGCTCGACCCGCACGACATGGCAGATCTTATTCATGGCACGACCCGAGA
CCACAAGAAGGCTGTACCACACCCACAGCGGTTTTGGGCACGTGAAGGTC
TACACATGGATTCCATACATTTTCGACAATGTTCCGTTGCATGCGTGAGA
CGTTCTACGAGCCGGTTTATCAAACGTTTGGGACAACAAGGTGGTTGCGA
GTTGAAGGAGGCCGCGGTCCGCGTTTTGACCCATGTGAACGTATGGCCGT
ATTCCTGTATCGGATGGGACATTCCGCTGGGGCGCGTGAAACAGCGGTTT
TATTTGGCTTGTCCGTGGGCGCGGTCCACTACTCTACGATATCAGTTGCG
AAGCGCATAA
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