mRNA_A-nodosum_M_contig1128.19.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1128.19.1
Unique NamemRNA_A-nodosum_M_contig1128.19.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1128.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1128contigA-nodosum_M_contig1128:223990..227393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog13249.RPRC013156-PA
PFAMsAnk_2,Ank_4
Model size3098
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.65e-05
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota,39PA1@33154|Opisthokonta,3CQUJ@33208|Metazoa,3E71H@33213|Bilateria,42B7Z@6656|Arthropoda,3T0N4@50557|Insecta
DescriptionAnkyrin repeat
Cds size2970
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866525.8793957-CDS-A-nodosum_M_contig1128:223989..2244101680866525.8793957-CDS-A-nodosum_M_contig1128:223989..224410Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1128 223990..224410 -
1680866525.8996599-CDS-A-nodosum_M_contig1128:224536..2250531680866525.8996599-CDS-A-nodosum_M_contig1128:224536..225053Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1128 224537..225053 -
1680866525.9119642-CDS-A-nodosum_M_contig1128:225233..2272651680866525.9119642-CDS-A-nodosum_M_contig1128:225233..227265Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1128 225234..227265 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866525.9240832-UTR-A-nodosum_M_contig1128:227265..2273931680866525.9240832-UTR-A-nodosum_M_contig1128:227265..227393Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1128 227266..227393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1128.19.1prot_A-nodosum_M_contig1128.19.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1128 223990..227265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1128.19.1

>prot_A-nodosum_M_contig1128.19.1 ID=prot_A-nodosum_M_contig1128.19.1|Name=mRNA_A-nodosum_M_contig1128.19.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=990bp
MMTGDGIGEAPSPYQRLFQAVSVAMSNHSGEEGQSLRNECKFAVARGDFQ
PDKDILKRILSWAVHNGNSSLVAEVVRLGATVSCAKDFHHNSGYSLLLSA
VYHGKEDIVGWLLVASAGGDGLQGWSVALQTACVMGRVGVVKALLADGTY
PSPSASAKDNEPRKPSAFEMAAKCGHVGVMRVLLQHHARGAWAECGDSAG
GINNVLRTVMGSPNNTADVIDFLVNEAGADVNARNDHGDTLLHEAVLWDS
LEATVALLRHGADVEAVNEIGDTPLFIAAGFGKQSVFEVLAEAGANIHHR
NSRGLSVLDKTAIAGNLETLGALVRRKVDVRAIGPTGSSSLHWAAINNKE
LSIGALIAAGADDSALDETGYSPLHWASMTGKFSAIAALAAAGTDINRRT
SQDIELTALDWAAFRGNVDALKVLVENGADVRGSDTRGYTPLHFAVECNS
VGASEASCEAITALLLYGAEVDAADKKGKTPLVMAIKMGKLALVDALVAG
GADVNRRNVVDDKAPLDVAAFIGNLGVLKSLLGYGSRAKSVNSVGATALH
RVAGFEAAGLVHALVDAGADVSAEDANGMAPIHYASISGSPTAIVALVQR
GADNEARTKNGMTPLQVAAKCGKVSAIDALAAAGADINLRTTTEDTSALD
LAAHAGEVDAMNALIRHGANVRAGNARDFTSNTGATPLHMAAERGRLPVL
NALVEAGANVWRRTQDHMSALDLAAGKGHVDVLKALIRHGVDVNASNTKG
HSPLYEAAARNRVAAIRALVEAGADVHGLAQGWTPLDASCEAGAADAIAT
LSELGADLTRTNVNGLIPLQLAVDGGHLDAVNALLEAGADPNQEFGGKRV
ACMVNDLLGAGADVNNGVSYEDMSALHVACVVPSTNIMPTLLSHGASIGV
RDENGKSPLHYAAHTCVSSDPGTDRVDVLLRAGADETARDSDGLTPAEFA
QINFFDETRGDALARVIIALERAPVDRAWRRRGTVLLCRS
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mRNA from alignment at A-nodosum_M_contig1128:223990..227393-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1128.19.1 ID=mRNA_A-nodosum_M_contig1128.19.1|Name=mRNA_A-nodosum_M_contig1128.19.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3404bp|location=Sequence derived from alignment at A-nodosum_M_contig1128:223990..227393- (Ascophyllum nodosum dioecious)
TTCAGAAGTACCAAACACCAGCAAATACATCGAACGCCTAACGGACTTCT
CACGTCGTCCGCTTAGAAAGAACGTTCGAGTGGCGGTGGTGAATTTGAGC
CCATCTTCGTTTGCCTTTTGCTGGTGTGATGATGACTGGGGATGGCATCG
GCGAGGCCCCTAGCCCTTACCAGCGACTGTTTCAGGCGGTATCTGTAGCG
ATGTCTAACCATTCCGGGGAGGAGGGCCAGTCGTTGCGCAATGAGTGCAA
ATTCGCCGTGGCTCGAGGAGATTTCCAGCCAGACAAGGACATCCTGAAAC
GCATCTTGAGTTGGGCCGTTCATAACGGCAACAGCTCTCTCGTCGCAGAG
GTCGTGCGGTTGGGCGCGACGGTTTCCTGTGCCAAAGACTTCCACCACAA
CAGCGGCTACAGCCTGCTGCTCTCGGCAGTCTACCATGGGAAGGAAGACA
TAGTTGGCTGGCTCCTGGTGGCCAGCGCGGGTGGGGATGGGTTGCAAGGA
TGGTCAGTGGCTCTCCAGACTGCTTGCGTTATGGGGAGAGTAGGTGTTGT
CAAGGCGTTGCTCGCCGATGGCACTTACCCGAGCCCGTCGGCATCAGCAA
AAGACAACGAGCCGCGCAAGCCCTCGGCGTTTGAAATGGCCGCCAAATGT
GGCCATGTGGGTGTCATGAGGGTCCTTCTTCAGCACCATGCTCGGGGCGC
CTGGGCTGAATGCGGTGATTCTGCTGGAGGGATCAACAATGTTTTGCGCA
CGGTGATGGGCAGTCCCAACAATACCGCCGACGTGATAGACTTTCTCGTC
AATGAAGCTGGTGCAGATGTGAACGCGAGAAATGACCATGGGGATACACT
CCTCCACGAAGCTGTGTTATGGGATTCCTTGGAGGCTACCGTCGCCCTCC
TGCGACACGGTGCGGACGTCGAAGCTGTAAATGAGATAGGTGATACACCC
CTATTTATTGCGGCAGGATTTGGAAAACAGTCGGTGTTTGAAGTACTGGC
GGAGGCAGGAGCGAACATTCACCATCGGAACAGCCGTGGGTTGTCTGTTC
TGGATAAGACCGCTATCGCGGGAAACCTCGAAACTCTGGGAGCTCTCGTG
CGGCGCAAAGTTGACGTGCGCGCTATTGGCCCGACCGGTTCCAGCTCCTT
GCATTGGGCAGCCATAAACAACAAGGAGTTGTCGATCGGTGCTCTCATAG
CAGCTGGGGCCGACGATAGTGCATTGGACGAGACAGGATACTCACCTCTC
CATTGGGCCTCTATGACTGGAAAGTTTTCGGCGATTGCTGCCCTGGCAGC
GGCAGGCACGGATATCAACCGCCGTACTTCACAAGATATTGAACTGACGG
CATTGGATTGGGCTGCTTTTCGGGGTAATGTAGATGCCTTAAAAGTGCTC
GTGGAGAACGGGGCGGATGTCAGGGGAAGCGATACCCGTGGTTATACCCC
CTTGCATTTCGCAGTGGAATGCAACAGCGTGGGAGCGAGCGAAGCCTCGT
GCGAGGCGATCACCGCCCTCCTGCTGTACGGAGCCGAAGTGGACGCCGCG
GACAAGAAAGGCAAGACGCCGCTCGTCATGGCAATCAAGATGGGAAAACT
GGCGTTGGTTGACGCTCTTGTCGCGGGAGGTGCGGACGTCAACCGTCGAA
ATGTAGTAGACGATAAGGCGCCCCTCGATGTGGCTGCTTTCATCGGAAAT
CTGGGAGTGTTGAAATCGCTTCTTGGGTACGGATCGAGGGCAAAATCTGT
GAACTCGGTTGGTGCTACGGCTCTCCATCGCGTGGCAGGTTTCGAAGCAG
CGGGTCTAGTCCACGCCCTTGTCGATGCCGGAGCTGATGTCAGCGCGGAG
GACGCCAATGGAATGGCGCCCATCCACTACGCGTCGATCAGCGGTAGCCC
TACGGCCATAGTGGCTCTCGTACAACGTGGAGCTGACAACGAAGCCCGCA
CTAAAAATGGTATGACACCGCTGCAGGTCGCGGCCAAGTGTGGGAAGGTG
TCGGCTATTGACGCTCTTGCTGCAGCCGGCGCAGACATTAATCTACGAAC
CACAACAGAGGATACCTCTGCGCTCGACCTCGCTGCCCACGCCGGAGAGG
TGGACGCCATGAACGCTCTCATCAGACATGGAGCGAACGTACGCGCCGGA
AACGCGCGTGGTTACACTGCCTTATACTTTGTGTCGGACGTCAATCAAGC
GGCGTCGATCGACTTTCTCGTTGGGGCTGGGGCAGACGTCGACGTAGAGG
CTGAGCAAGGTTTCACGCCTCTGCACATTGCGTCACATCTCGGGTTTTCT
GGGGCCGTGGGTTCCCTCTTGAAGCACGGCGCAGACAAAGACTTCACCTC
GAACACCGGCGCGACGCCGCTTCACATGGCGGCAGAGCGTGGCCGGTTGC
CGGTCCTCAACGCCCTCGTGGAGGCGGGTGCCAACGTCTGGCGGCGGACG
CAAGATCACATGTCCGCGCTCGACCTGGCTGCCGGTAAAGGTCACGTGGA
CGTTTTGAAGGCGCTCATTCGGCATGGTGTGGATGTAAACGCCAGCAACA
CCAAAGGTCACAGCCCGCTATACGAAGCGGCCGCGAGAAACAGAGTGGCC
GCGATCCGCGCGCTCGTCGAGGCAGGCGCTGACGTCCATGGGTTGGCGCA
AGGGTGGACGCCGCTTGACGCCTCGTGTGAAGCGGGCGCCGCGGACGCCA
TCGCCACCCTTTCGGAACTGGGCGCCGACTTGACTAGGACTAACGTAAAC
GGCTTGATTCCGCTCCAGCTCGCGGTCGACGGAGGCCACCTCGACGCCGT
GAACGCGTTGCTGGAGGCCGGCGCGGACCCCAACCAAGAGTTTGGTGGGA
AGCGCGTGTTATATTACTCCATCCTGAGAAGTAGGAGAGACATTCTGGCG
AGTCTTCTTCTGCACGGGGCTGACGTGAACAAGAATGTCGAAGGGCGTTC
GAAGGCCCTGAACGTTGCCGTTTCGTTTGAAAGGGCGTGCATGGTCAACG
ATCTCCTCGGAGCCGGGGCGGACGTAAACAACGGTGTTAGTTATGAGGAC
ATGAGCGCACTACACGTGGCGTGCGTGGTGCCTAGCACCAACATAATGCC
CACCCTGCTGTCCCACGGCGCTAGCATCGGCGTCAGAGATGAAAACGGAA
AGTCTCCCCTGCACTACGCGGCGCACACCTGCGTTTCATCGGACCCGGGC
ACCGACCGCGTGGACGTCCTGCTAAGGGCCGGCGCCGACGAGACCGCGCG
CGACTCGGACGGTCTCACCCCTGCGGAGTTCGCGCAAATAAACTTCTTCG
ACGAAACGCGTGGCGATGCGCTCGCTCGTGTAATCATAGCCCTAGAGCGA
GCTCCTGTGGACAGGGCGTGGCGTCGCCGGGGCACGGTTTTGCTGTGTCG
TTCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1128:223990..227393-

>mRNA_A-nodosum_M_contig1128.19.1 ID=mRNA_A-nodosum_M_contig1128.19.1|Name=mRNA_A-nodosum_M_contig1128.19.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2970bp|location=Sequence derived from alignment at A-nodosum_M_contig1128:223990..227393- (Ascophyllum nodosum dioecious)
ATGATGACTGGGGATGGCATCGGCGAGGCCCCTAGCCCTTACCAGCGACT
GTTTCAGGCGGTATCTGTAGCGATGTCTAACCATTCCGGGGAGGAGGGCC
AGTCGTTGCGCAATGAGTGCAAATTCGCCGTGGCTCGAGGAGATTTCCAG
CCAGACAAGGACATCCTGAAACGCATCTTGAGTTGGGCCGTTCATAACGG
CAACAGCTCTCTCGTCGCAGAGGTCGTGCGGTTGGGCGCGACGGTTTCCT
GTGCCAAAGACTTCCACCACAACAGCGGCTACAGCCTGCTGCTCTCGGCA
GTCTACCATGGGAAGGAAGACATAGTTGGCTGGCTCCTGGTGGCCAGCGC
GGGTGGGGATGGGTTGCAAGGATGGTCAGTGGCTCTCCAGACTGCTTGCG
TTATGGGGAGAGTAGGTGTTGTCAAGGCGTTGCTCGCCGATGGCACTTAC
CCGAGCCCGTCGGCATCAGCAAAAGACAACGAGCCGCGCAAGCCCTCGGC
GTTTGAAATGGCCGCCAAATGTGGCCATGTGGGTGTCATGAGGGTCCTTC
TTCAGCACCATGCTCGGGGCGCCTGGGCTGAATGCGGTGATTCTGCTGGA
GGGATCAACAATGTTTTGCGCACGGTGATGGGCAGTCCCAACAATACCGC
CGACGTGATAGACTTTCTCGTCAATGAAGCTGGTGCAGATGTGAACGCGA
GAAATGACCATGGGGATACACTCCTCCACGAAGCTGTGTTATGGGATTCC
TTGGAGGCTACCGTCGCCCTCCTGCGACACGGTGCGGACGTCGAAGCTGT
AAATGAGATAGGTGATACACCCCTATTTATTGCGGCAGGATTTGGAAAAC
AGTCGGTGTTTGAAGTACTGGCGGAGGCAGGAGCGAACATTCACCATCGG
AACAGCCGTGGGTTGTCTGTTCTGGATAAGACCGCTATCGCGGGAAACCT
CGAAACTCTGGGAGCTCTCGTGCGGCGCAAAGTTGACGTGCGCGCTATTG
GCCCGACCGGTTCCAGCTCCTTGCATTGGGCAGCCATAAACAACAAGGAG
TTGTCGATCGGTGCTCTCATAGCAGCTGGGGCCGACGATAGTGCATTGGA
CGAGACAGGATACTCACCTCTCCATTGGGCCTCTATGACTGGAAAGTTTT
CGGCGATTGCTGCCCTGGCAGCGGCAGGCACGGATATCAACCGCCGTACT
TCACAAGATATTGAACTGACGGCATTGGATTGGGCTGCTTTTCGGGGTAA
TGTAGATGCCTTAAAAGTGCTCGTGGAGAACGGGGCGGATGTCAGGGGAA
GCGATACCCGTGGTTATACCCCCTTGCATTTCGCAGTGGAATGCAACAGC
GTGGGAGCGAGCGAAGCCTCGTGCGAGGCGATCACCGCCCTCCTGCTGTA
CGGAGCCGAAGTGGACGCCGCGGACAAGAAAGGCAAGACGCCGCTCGTCA
TGGCAATCAAGATGGGAAAACTGGCGTTGGTTGACGCTCTTGTCGCGGGA
GGTGCGGACGTCAACCGTCGAAATGTAGTAGACGATAAGGCGCCCCTCGA
TGTGGCTGCTTTCATCGGAAATCTGGGAGTGTTGAAATCGCTTCTTGGGT
ACGGATCGAGGGCAAAATCTGTGAACTCGGTTGGTGCTACGGCTCTCCAT
CGCGTGGCAGGTTTCGAAGCAGCGGGTCTAGTCCACGCCCTTGTCGATGC
CGGAGCTGATGTCAGCGCGGAGGACGCCAATGGAATGGCGCCCATCCACT
ACGCGTCGATCAGCGGTAGCCCTACGGCCATAGTGGCTCTCGTACAACGT
GGAGCTGACAACGAAGCCCGCACTAAAAATGGTATGACACCGCTGCAGGT
CGCGGCCAAGTGTGGGAAGGTGTCGGCTATTGACGCTCTTGCTGCAGCCG
GCGCAGACATTAATCTACGAACCACAACAGAGGATACCTCTGCGCTCGAC
CTCGCTGCCCACGCCGGAGAGGTGGACGCCATGAACGCTCTCATCAGACA
TGGAGCGAACGTACGCGCCGGAAACGCGCGTGACTTCACCTCGAACACCG
GCGCGACGCCGCTTCACATGGCGGCAGAGCGTGGCCGGTTGCCGGTCCTC
AACGCCCTCGTGGAGGCGGGTGCCAACGTCTGGCGGCGGACGCAAGATCA
CATGTCCGCGCTCGACCTGGCTGCCGGTAAAGGTCACGTGGACGTTTTGA
AGGCGCTCATTCGGCATGGTGTGGATGTAAACGCCAGCAACACCAAAGGT
CACAGCCCGCTATACGAAGCGGCCGCGAGAAACAGAGTGGCCGCGATCCG
CGCGCTCGTCGAGGCAGGCGCTGACGTCCATGGGTTGGCGCAAGGGTGGA
CGCCGCTTGACGCCTCGTGTGAAGCGGGCGCCGCGGACGCCATCGCCACC
CTTTCGGAACTGGGCGCCGACTTGACTAGGACTAACGTAAACGGCTTGAT
TCCGCTCCAGCTCGCGGTCGACGGAGGCCACCTCGACGCCGTGAACGCGT
TGCTGGAGGCCGGCGCGGACCCCAACCAAGAGTTTGGTGGGAAGCGCGTG
GCGTGCATGGTCAACGATCTCCTCGGAGCCGGGGCGGACGTAAACAACGG
TGTTAGTTATGAGGACATGAGCGCACTACACGTGGCGTGCGTGGTGCCTA
GCACCAACATAATGCCCACCCTGCTGTCCCACGGCGCTAGCATCGGCGTC
AGAGATGAAAACGGAAAGTCTCCCCTGCACTACGCGGCGCACACCTGCGT
TTCATCGGACCCGGGCACCGACCGCGTGGACGTCCTGCTAAGGGCCGGCG
CCGACGAGACCGCGCGCGACTCGGACGGTCTCACCCCTGCGGAGTTCGCG
CAAATAAACTTCTTCGACGAAACGCGTGGCGATGCGCTCGCTCGTGTAAT
CATAGCCCTAGAGCGAGCTCCTGTGGACAGGGCGTGGCGTCGCCGGGGCA
CGGTTTTGCTGTGTCGTTCT
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