mRNA_A-nodosum_M_contig1125.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1125.7.1
Unique NamemRNA_A-nodosum_M_contig1125.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1125.7.1 vs. uniprot
Match: A0A6H5KRW3_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW3_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.120e-12
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 3 
Query:  132 IQPLRYLRRIILDIKRKWSISELECDAIV*AIKRNRQMFYGIPVEVETDHQPLQNLAML 308
            ++PL YL R     +R+WS +ELEC AIV AIK+NR +FYGIP ++ +DHQPL+NL  L
Sbjct:  305 VRPLCYLSRSTYPNERRWSATELECGAIVWAIKKNRTLFYGIPFQIYSDHQPLRNLESL 363
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BLAST of mRNA_A-nodosum_M_contig1125.7.1 vs. uniprot
Match: A0A6H5K1X0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X0_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 8.770e-12
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 3 
Query:  132 IQPLRYLRRIILDIKRKWSISELECDAIV*AIKRNRQMFYGIPVEVETDHQPLQNLAML 308
            ++PL YL R     +R WS +ELEC AIV  IK+NR +FYGIP ++ +DHQPL+NL  L
Sbjct:  188 VRPLCYLSRSTYPNERWWSATELECGAIVWVIKKNRTLFYGIPFQIYSDHQPLRNLESL 246
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BLAST of mRNA_A-nodosum_M_contig1125.7.1 vs. uniprot
Match: A0A6H5K4J2_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J2_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.940e-11
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 3 
Query:  129 AIQPLRYLRRIILDIKRKWSISELECDAIV*AIKRNRQMFYGIPVEVETDHQPLQNLAML 308
            +I+PL +L R  +  + +WS +ELE  AIV AIK+NR +FYGIP EV +DHQPL+NL  L
Sbjct:   56 SIRPLCFLSRSTVPNETRWSPTELEAGAIVWAIKKNRTLFYGIPFEVYSDHQPLRNLGSL 115
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BLAST of mRNA_A-nodosum_M_contig1125.7.1 vs. uniprot
Match: A0A6H5JJN6_9PHAE (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJN6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.080e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:  129 AIQPLRYLRRIILDIKRKWSISELECDAIV*AIKRNRQMFYGIPVEVETDHQPLQNLAML 308
            +I+PL +L R     + +WS +ELE  AIV AIK+NR +FYGIP EV +DHQPL+NL  L
Sbjct:  149 SIRPLCFLSRSTFPNETRWSPTELEAGAIVWAIKKNRTLFYGIPFEVYSDHQPLRNLGSL 208
[Close]
BLAST of mRNA_A-nodosum_M_contig1125.7.1 vs. uniprot
Match: A0A6H5KAM4_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.310e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:  129 AIQPLRYLRRIILDIKRKWSISELECDAIV*AIKRNRQMFYGIPVEVETDHQPLQNLAML 308
            +I+PL +L R     + +WS +ELE  AIV AIK+NR +FYGIP EV +DHQPL+NL  L
Sbjct:  149 SIRPLCFLSRSTFPNETRWSPTELEAGAIVWAIKKNRTLFYGIPFEVYSDHQPLRNLGSL 208
[Close]
BLAST of mRNA_A-nodosum_M_contig1125.7.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.120e-10
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:  129 AIQPLRYLRRIILDIKRKWSISELECDAIV*AIKRNRQMFYGIPVEVETDHQPLQNLAML 308
            +I+PL +L R     + +WS ++LE  AIV AIK+NR +FYGIP EV +DHQPL+NL  L
Sbjct:  149 SIRPLCFLSRSTFPNETRWSPTKLEAGAIVWAIKQNRTLFYGIPFEVYSDHQPLRNLGSL 208
[Close]
BLAST of mRNA_A-nodosum_M_contig1125.7.1 vs. uniprot
Match: A0A6H5L269_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L269_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.530e-8
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 MLDELFSPNVLAFPDFEAAISGSRKFRLITDASADGFGAVIEQ 129
            +L +L S  VLAFPD++AAI G+RKFRL TDAS  GFGAV+EQ
Sbjct:  351 VLAQLASYEVLAFPDYDAAIDGTRKFRLTTDASISGFGAVLEQ 393
[Close]
BLAST of mRNA_A-nodosum_M_contig1125.7.1 vs. uniprot
Match: A0A6H5K8H1_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8H1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.060e-8
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 MLDELFSPNVLAFPDFEAAISGSRKFRLITDASADGFGAVIEQ 129
            +L +L S  VLAFPD+ AAI G+RKFRL TDAS  GFGAV+EQ
Sbjct:  323 VLAQLASYEVLAFPDYAAAIDGTRKFRLTTDASISGFGAVLEQ 365
[Close]
BLAST of mRNA_A-nodosum_M_contig1125.7.1 vs. uniprot
Match: A0A6H5KZ45_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ45_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 8.600e-8
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 MLDELFSPNVLAFPDFEAAISGSRKFRLITDASADGFGAVIEQ 129
            +L +L S  VLAFPD+ AAI G+RKFRL TDAS  GFGAV+EQ
Sbjct:  378 VLAQLASFEVLAFPDYAAAIDGARKFRLTTDASISGFGAVLEQ 420
[Close]
BLAST of mRNA_A-nodosum_M_contig1125.7.1 vs. uniprot
Match: A0A6H5KCS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCS5_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.640e-7
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 MLDELFSPNVLAFPDFEAAISGSRKFRLITDASADGFGAVIEQ 129
            ++D+L SPNVLA+ D   AISG RKFR+ITDAS DG GAVIEQ
Sbjct:  153 LMDKLSSPNVLAYRD---AISGVRKFRVITDASQDGLGAVIEQ 192
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1125.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KRW3_9PHAE1.120e-1255.93Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1X0_9PHAE8.770e-1254.24Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K4J2_9PHAE1.940e-1155.00RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJN6_9PHAE6.080e-1155.00RT_RNaseH domain-containing protein (Fragment) n=1... [more]
A0A6H5KAM4_9PHAE6.310e-1155.00RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JWR4_9PHAE3.120e-1053.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L269_9PHAE2.530e-867.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8H1_9PHAE6.060e-867.44RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KZ45_9PHAE8.600e-867.44Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KCS5_9PHAE1.640e-769.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1125contigA-nodosum_M_contig1125:197205..197513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size309
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866524.5030618-CDS-A-nodosum_M_contig1125:197204..1975131680866524.5030618-CDS-A-nodosum_M_contig1125:197204..197513Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1125 197205..197513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1125.7.1prot_A-nodosum_M_contig1125.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1125 197205..197513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1125.7.1

>prot_A-nodosum_M_contig1125.7.1 ID=prot_A-nodosum_M_contig1125.7.1|Name=mRNA_A-nodosum_M_contig1125.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=103bp
MLDELFSPNVLAFPDFEAAISGSRKFRLITDASADGFGAVIEQQFNLYAT
SEESSSTLSVSGAFLSWNATRSCELSSVTDKCSTASRLKSRQITSRFKIS
QC*
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mRNA from alignment at A-nodosum_M_contig1125:197205..197513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1125.7.1 ID=mRNA_A-nodosum_M_contig1125.7.1|Name=mRNA_A-nodosum_M_contig1125.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at A-nodosum_M_contig1125:197205..197513+ (Ascophyllum nodosum dioecious)
ATGTTAGACGAATTGTTTAGCCCCAATGTTTTGGCCTTCCCAGATTTCGA
AGCCGCTATTTCGGGATCAAGAAAATTTCGGCTCATTACGGATGCAAGCG
CAGACGGATTCGGTGCGGTGATAGAACAGCAATTCAACCTCTACGCTACC
TCAGAAGAATCATCCTCGACATTAAGCGTAAGTGGAGCATTTCTGAGCTG
GAATGCGACGCGATCGTGTGAGCTATCAAGCGTAACCGACAAATGTTCTA
CGGCATCCCGGTTGAAGTCGAGACAGATCACCAGCCGCTTCAAAATCTCG
CAATGCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1125:197205..197513+

>mRNA_A-nodosum_M_contig1125.7.1 ID=mRNA_A-nodosum_M_contig1125.7.1|Name=mRNA_A-nodosum_M_contig1125.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=309bp|location=Sequence derived from alignment at A-nodosum_M_contig1125:197205..197513+ (Ascophyllum nodosum dioecious)
ATGTTAGACGAATTGTTTAGCCCCAATGTTTTGGCCTTCCCAGATTTCGA
AGCCGCTATTTCGGGATCAAGAAAATTTCGGCTCATTACGGATGCAAGCG
CAGACGGATTCGGTGCGGTGATAGAACAGCAATTCAACCTCTACGCTACC
TCAGAAGAATCATCCTCGACATTAAGCGTAAGTGGAGCATTTCTGAGCTG
GAATGCGACGCGATCGTGTGAGCTATCAAGCGTAACCGACAAATGTTCTA
CGGCATCCCGGTTGAAGTCGAGACAGATCACCAGCCGCTTCAAAATCTCG
CAATGCTGA
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