mRNA_A-nodosum_M_contig112.53.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig112.53.1
Unique NamemRNA_A-nodosum_M_contig112.53.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig112.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig112contigA-nodosum_M_contig112:653846..654249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size405
Hectar predicted targeting categoryother localisation
Exons1
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866518.2917721-CDS-A-nodosum_M_contig112:653845..6542441680866518.2917721-CDS-A-nodosum_M_contig112:653845..654244Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig112 653846..654244 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866518.302623-UTR-A-nodosum_M_contig112:654244..6542491680866518.302623-UTR-A-nodosum_M_contig112:654244..654249Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig112 654245..654249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig112.53.1prot_A-nodosum_M_contig112.53.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig112 653846..654244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig112.53.1

>prot_A-nodosum_M_contig112.53.1 ID=prot_A-nodosum_M_contig112.53.1|Name=mRNA_A-nodosum_M_contig112.53.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=133bp
MSVSSPEVGEGEEGDGETAANASEQTHEDYRRRHRGHGAGSQSRGQGRVR
GGANNSRGDLASSDDDDEDDNDTGDGDSESSDEVAGDIPGAVATKVTSAM
RSKAGSSSSSISINSESGGSGSSGSGSSSENDG
back to top

mRNA from alignment at A-nodosum_M_contig112:653846..654249-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig112.53.1 ID=mRNA_A-nodosum_M_contig112.53.1|Name=mRNA_A-nodosum_M_contig112.53.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=404bp|location=Sequence derived from alignment at A-nodosum_M_contig112:653846..654249- (Ascophyllum nodosum dioecious)
AGCACATGTCAGTGTCGTCGCCCGAGGTCGGAGAAGGTGAAGAGGGCGAT
GGGGAGACGGCCGCGAACGCTTCCGAGCAGACGCACGAGGATTATCGTCG
CCGGCATCGCGGCCACGGCGCCGGAAGCCAAAGCCGTGGCCAAGGCCGCG
TACGGGGCGGGGCGAACAATTCCCGCGGCGACTTGGCGTCGTCTGATGAC
GACGACGAGGATGACAACGACACCGGCGATGGCGACAGTGAGAGCTCCGA
CGAAGTTGCTGGTGATATCCCGGGCGCGGTGGCTACTAAGGTGACATCTG
CGATGCGGAGCAAAGCCGGCAGCAGCAGCAGCAGCATCAGCATCAACAGC
GAAAGTGGCGGCAGCGGTAGCAGTGGCAGCGGCAGCAGCAGTGAAAACGA
CGGC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig112:653846..654249-

>mRNA_A-nodosum_M_contig112.53.1 ID=mRNA_A-nodosum_M_contig112.53.1|Name=mRNA_A-nodosum_M_contig112.53.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=399bp|location=Sequence derived from alignment at A-nodosum_M_contig112:653846..654249- (Ascophyllum nodosum dioecious)
ATGTCAGTGTCGTCGCCCGAGGTCGGAGAAGGTGAAGAGGGCGATGGGGA
GACGGCCGCGAACGCTTCCGAGCAGACGCACGAGGATTATCGTCGCCGGC
ATCGCGGCCACGGCGCCGGAAGCCAAAGCCGTGGCCAAGGCCGCGTACGG
GGCGGGGCGAACAATTCCCGCGGCGACTTGGCGTCGTCTGATGACGACGA
CGAGGATGACAACGACACCGGCGATGGCGACAGTGAGAGCTCCGACGAAG
TTGCTGGTGATATCCCGGGCGCGGTGGCTACTAAGGTGACATCTGCGATG
CGGAGCAAAGCCGGCAGCAGCAGCAGCAGCATCAGCATCAACAGCGAAAG
TGGCGGCAGCGGTAGCAGTGGCAGCGGCAGCAGCAGTGAAAACGACGGC
back to top