mRNA_A-nodosum_M_contig112.10.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig112.10.1 vs. uniprot
Match: A0A6H5KYE3_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYE3_9PHAE) HSP 1 Score: 160 bits (406), Expect = 1.290e-43 Identity = 82/145 (56.55%), Postives = 109/145 (75.17%), Query Frame = 2
Query: 326 RNGRTHLTSQLIVTVNAPRPALPPGKRMIRRRKAPPSPAPVSDVEIRNAPVEVIRSESEYIAILKENEQSLVVIKFFATWCRSCKSMDLKYRRLALEHENVKFYEVDVLESPELKKAMAVKAVPTVKLHAGSLGEVASFPCGPKK 760
R RT + V ++ PR LP GKR++RR+K PS V+ NAPV +I+S++EY IL+ N SLVVIKFFA WCRSCK++D+KYRR+A+E+++VKF E+DV +SP+LKK + V+AVPTVKLHAG LG+VASF CGP+K
Sbjct: 31 RRQRTTIAQIATVAIDTPR-TLPKGKRIVRRKKRQPSQP--KHVDTANAPVTLIKSKAEYDEILRHNINSLVVIKFFAPWCRSCKALDVKYRRMAVENDDVKFVEIDVHQSPDLKKVLGVRAVPTVKLHAGPLGQVASFTCGPRK 172
BLAST of mRNA_A-nodosum_M_contig112.10.1 vs. uniprot
Match: A0A835Z936_9STRA (Thioredoxin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z936_9STRA) HSP 1 Score: 114 bits (286), Expect = 7.190e-27 Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 2
Query: 455 VEIRNAPVEVIRSESEYIAILKENEQSLVVIKFFATWCRSCKSMDLKYRRLALEHENVKFYEVDVLESPELKKAMAVKAVPTVKLHAGSLGEVASFPCGPKKV 763
V++ APV + + EY A+L EN +SLVV K+FA WCRSCK+MDLK++RLALE+ V F E+D+ S ELK+ VKA+P + +HAG LG V +F CGP KV
Sbjct: 12 VDLSTAPVTRVTTSQEYHALLAENPESLVVFKWFAPWCRSCKAMDLKFKRLALENPCVVFAEIDIDVSRELKRQHGVKAIPAIHMHAGHLGLVENFTCGPSKV 114
BLAST of mRNA_A-nodosum_M_contig112.10.1 vs. uniprot
Match: A0A836CK13_9STRA (Thioredoxin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK13_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.590e-19 Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 2
Query: 461 IRNAPVEVIRSESEYIAILKENEQSLVVIKFFATWCRSCKSMDLKYRRLALEHENVKFYEVDVLESPELKKAMAVKAVPTVKLHAGSLGEVASFPCGPKKVTVYGTVVVR 790
+ APV+ + S EY +L N LVV K+ A +CR+CK+MDLK+RRLALE +V F +++V + +LK+A V +P + +HAG LG+V +F CGP + V R
Sbjct: 74 LSTAPVQHVASSQEYHQLLALNPDKLVVFKWHAPYCRACKAMDLKFRRLALERRDVVFADINVARAVDLKRAHGVAVIPAIHMHAGHLGQVEAFACGPSSAPLLRARVDR 183
BLAST of mRNA_A-nodosum_M_contig112.10.1 vs. uniprot
Match: A0A7S1TN71_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TN71_9RHOD) HSP 1 Score: 89.7 bits (221), Expect = 1.600e-17 Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 2
Query: 308 ASSHHSRNGRTHLTSQLIVTVNAPRPALPPGKRMIRRRKAPPSPAPVSDVEIRNAPVEVIRSESEYIAILKENEQSLVVIKFFATWCRSCKSMDLKYRRLALEHENVKFYEVDVLESPELKKAMAVKAVPTVKLHAGSLGEVASFPCGPKK 760
AS R +THL +Q + + P R + +P P+ + R PV + +Y+A L+ + + LVVIKF+A WCRSCK+M+ K +RLA E+ + F EVD E+ EL + + VK++P + GS G V F GP +
Sbjct: 32 ASEGRGRTAKTHLRNQRARVCSEMSVSAPDQVRDVT------APVPILERVTRMEPVVRLSGFGDYLAALECSSERLVVIKFYAPWCRSCKAMEPKVKRLAREYPEILFCEVDFQENHELCRRIGVKSIPAFHFYDGSAGRVEDFTAGPAR 176
BLAST of mRNA_A-nodosum_M_contig112.10.1 vs. uniprot
Match: A0A2V3IJC0_9FLOR (Thioredoxin-like 2-1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJC0_9FLOR) HSP 1 Score: 87.0 bits (214), Expect = 1.010e-16 Identity = 39/115 (33.91%), Postives = 67/115 (58.26%), Query Frame = 2
Query: 473 PVEVIRSESEYIAILKENEQSLVVIKFFATWCRSCKSMDLKYRRLALEHENVKFYEVDVLESPELKKAMAVKAVPTVKLHAGSLGEVASFPCGPKKVTVYGTVVVRAPCSPLSSH 817
PV++I +Y+ +L+E+ SLVV+K FA WCRSC+++ K R A E NV+F+++D ++ EL + V ++PT + G GE+ F CGP++ + + + + H
Sbjct: 62 PVQLIHGVEQYLQVLRESSDSLVVLKVFAPWCRSCRALTPKVNRFAREFSNVRFFKMDYEQNKELCHRLGVASMPTFVFYWGVAGEIEKFSCGPQRAYILREKIEQCLAGSCAIH 176
BLAST of mRNA_A-nodosum_M_contig112.10.1 vs. uniprot
Match: A0A7S3YAB7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAB7_HETAK) HSP 1 Score: 80.5 bits (197), Expect = 8.850e-14 Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 2
Query: 293 QSTSRASSHHSR-NGRTHLTSQLIVTVNAPRPALPPGKRMIRRRKAPPSPAPVSDVEIRNAPVEV--IRSESEYIAILKENEQSLVVIKFFATWCRSCKSMDLKYRRLALEH---ENVKFYEVDVLE--SPELKKAMAVKAVPTVKLHAGSLGEVASFPCGPKK 760
Q R + +HS + +L S + + + P R RK P S A + NA V + EY+ +L +++ LVV+KF+A WCRSCK++D+K+R+ A +V+F+E DV + + +KK + + +P V ++ GS G+V F CGP K
Sbjct: 31 QDPGRRTPYHSHLANKRNLASSIFLRKQSGAPT-----RTSNGRKRPLSAASSPSENMSNAEDRVGEVWGMQEYLDVLTQSKNQLVVMKFYAPWCRSCKALDVKFRKWARGEYAARDVRFFECDVFDPQNAAIKKMLEIDNIPLVHMYQGSQGKVEDFKCGPSK 189
BLAST of mRNA_A-nodosum_M_contig112.10.1 vs. uniprot
Match: A0A7S2UVR9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVR9_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 9.240e-14 Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 2
Query: 500 EYIAILKENEQSLVVIKFFATWCRSCKSMDLKYRRLALEHENVKFYEVDVLESPELKKAM----AVKAVPTVKLHAGSLGEVASFPCGPKKVTVYGTVV-----VRAPCSPLSSH 817
EY+ + + LVV+KFFATWCRSCK +D +Y++L +H +V F E+ +L+ KA V+ +PTV G+ G + PCG K++ ++ + + AP + + H
Sbjct: 82 EYLDAIANAGEKLVVVKFFATWCRSCKQLDYQYKKLPAQHPDVMFCEIAMLDEENNNKAFFKQYEVEVLPTVFFFRGAAGMIDRMPCGMKRIPIFKEKIDTYKKMDAPVAAIGHH 196
BLAST of mRNA_A-nodosum_M_contig112.10.1 vs. uniprot
Match: A0A7S3ATR9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATR9_9EUKA) HSP 1 Score: 76.6 bits (187), Expect = 6.900e-13 Identity = 36/90 (40.00%), Postives = 62/90 (68.89%), Query Frame = 2
Query: 503 YIAILKE--NEQSLVVIKFFATWCRSCKSMDLKYRRLALEHENVKFYEVDVLESPELKKAMAVKAVPTVKLHAGSLGEVASFPCGPKKVT 766
Y A+++E E +VVIKFFA+WCR+CK+M K+ R+A + +V+F+E+ + +L K++ +K +P +++ GS G+V F CGP K++
Sbjct: 64 YEALIEEATRENRVVVIKFFASWCRACKAMSPKFTRIADDWPDVEFHEIMFDNNKKLCKSLGIKILPYIEIIGGSGGKVEGFTCGPSKIS 153
BLAST of mRNA_A-nodosum_M_contig112.10.1 vs. uniprot
Match: A0A7S3VCG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCG8_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 9.990e-13 Identity = 37/116 (31.90%), Postives = 75/116 (64.66%), Query Frame = 2
Query: 434 SPAPVSDVEIRNAPVEVIRSESEYIAILKENEQSLVVIKFFATWCRSCKSMDLKYRRLALEHENVK----FYEVDVLESPELKKAMAVKAVPTVKLHAGSLGEVASFPCGPKKVTV 769
+P P +++++N + + S+ E+ A+L++N+ ++++KF+A WCR+CK ++ K+ +++ + + K F ++ V + E KA+ V A+P+V ++ G G + SFPCGP KV +
Sbjct: 103 NPPPPLELKMKNG-IYDLESKEEHQALLEQNQDKIILLKFYAPWCRACKGLEPKFIQISKDKKYAKLPLVFAQLSVANAKEYVKALGVLALPSVHIYGGEEGLLESFPCGPSKVPI 217
BLAST of mRNA_A-nodosum_M_contig112.10.1 vs. uniprot
Match: B8BY19_THAPS (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BY19_THAPS) HSP 1 Score: 74.3 bits (181), Expect = 1.000e-12 Identity = 31/95 (32.63%), Postives = 61/95 (64.21%), Query Frame = 2
Query: 482 VIRSESEYIAILKENEQSLVVIKFFATWCRSCKSMDLKYRRLALEH--ENVKFYEVDVLESPELKKAMAVKAVPTVKLHAGSLGEVASFPCGPKK 760
+I++ +Y+ L++N SL+ IK++A+WC+SC + YR+LA + +N++F EV+ ++ +L K + VK +PTV ++ G+++ C P +
Sbjct: 17 IIQNHEDYVRFLEDNGDSLLCIKYYASWCKSCAKFGIHYRKLARDEADQNIRFAEVEYTQNTKLCKTLKVKKLPTVHMYRKGKGKISDMTCRPSQ 111 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig112.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig112.10.1 >prot_A-nodosum_M_contig112.10.1 ID=prot_A-nodosum_M_contig112.10.1|Name=mRNA_A-nodosum_M_contig112.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=213bp MKGHALFATCSFISARTLFAFVAPSLLQLQQPLQSTSRASSHHSRNGRTHback to top mRNA from alignment at A-nodosum_M_contig112:36466..40914+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig112.10.1 ID=mRNA_A-nodosum_M_contig112.10.1|Name=mRNA_A-nodosum_M_contig112.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4449bp|location=Sequence derived from alignment at A-nodosum_M_contig112:36466..40914+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig112:36466..40914+ >mRNA_A-nodosum_M_contig112.10.1 ID=mRNA_A-nodosum_M_contig112.10.1|Name=mRNA_A-nodosum_M_contig112.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=639bp|location=Sequence derived from alignment at A-nodosum_M_contig112:36466..40914+ (Ascophyllum nodosum dioecious)back to top |