mRNA_A-nodosum_M_contig11173.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11173.1.1
Unique NamemRNA_A-nodosum_M_contig11173.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11173.1.1 vs. uniprot
Match: A0A6H5JIQ4_9PHAE (Spindle pole body component n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ4_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.530e-16
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 VSQDFNTRYWSGRYLLRANHVMASLDSRKEKILTTGKYLNVVR 129
            V QDFNTRYWSGRYLLR  HV+A+L  R++KILTTGKYLNVVR
Sbjct:   88 VGQDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVR 130
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BLAST of mRNA_A-nodosum_M_contig11173.1.1 vs. uniprot
Match: D8LBZ5_ECTSI (Spindle pole body component n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ5_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 6.250e-15
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 VSQDFNTRYWSGRYLLRANHVMASLDSRKEKILTTGKYLNVVR 129
            V QDFNTRYWSGRYLLR  HV+A+L  R++KILTTGKYLNVVR
Sbjct:  852 VGQDFNTRYWSGRYLLRPEHVIANLAGRQDKILTTGKYLNVVR 894
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BLAST of mRNA_A-nodosum_M_contig11173.1.1 vs. uniprot
Match: W7U244_9STRA (Gamma-tubulin complex component 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U244_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 9.730e-8
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 VSQDFNTRYWSGRYLLRANHVMASLDSRKEKILTTGKYLNVVR 129
            V +DFN  YW  R  + A HV + L+  K +ILTTGKYLNV+R
Sbjct:  662 VQEDFNAEYWDARSTICAEHVFSVLEEHKPRILTTGKYLNVIR 704
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BLAST of mRNA_A-nodosum_M_contig11173.1.1 vs. uniprot
Match: A0A7S2RS01_9STRA (Spindle pole body component (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RS01_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.410e-7
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 VSQDFNTRYWSGRYLLRANHVMASLDSRKEKILTTGKYLNVVR 129
            V+ DF T YW  R+ L+ +H+   L + + KILTTGKYLNVVR
Sbjct:   20 VTSDFTTTYWETRFTLQESHIPRFLAAHQHKILTTGKYLNVVR 62
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BLAST of mRNA_A-nodosum_M_contig11173.1.1 vs. uniprot
Match: F0ZDB7_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZDB7_DICPU)

HSP 1 Score: 53.5 bits (127), Expect = 4.660e-7
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 VSQDFNTRYWSGRYLLRANHVMASLDSRKEKILTTGKYLNVVR 129
            +++DFN  YW  RY+LR N +   L S   K+LTTGKYLNVV+
Sbjct:  487 INRDFNDIYWEERYILRENQIPNYLKSIANKVLTTGKYLNVVK 529
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BLAST of mRNA_A-nodosum_M_contig11173.1.1 vs. uniprot
Match: A0A835ZJD2_9STRA (Spc98 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJD2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.710e-7
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   10 DFNTRYWSGRYLLRANHVMASLDSRKEKILTTGKYLNVVR 129
            DFN +YW GRY ++   V + L +   KILTTGKYLNVVR
Sbjct:  670 DFNAQYWEGRYTIQQPMVASFLQAHAHKILTTGKYLNVVR 709
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BLAST of mRNA_A-nodosum_M_contig11173.1.1 vs. uniprot
Match: A0A151ZHF0_9MYCE (Spindle pole body component n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZHF0_9MYCE)

HSP 1 Score: 52.8 bits (125), Expect = 8.710e-7
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 VSQDFNTRYWSGRYLLRANHVMASLDSRKEKILTTGKYLNVVR 129
            +++DFN  YW  RYLLR++ +    D   +K+LTTGKYLNV+R
Sbjct:  518 MNRDFNDVYWEQRYLLRSDQIPKFFDQVAKKVLTTGKYLNVMR 560
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BLAST of mRNA_A-nodosum_M_contig11173.1.1 vs. uniprot
Match: SPC97_DICDI (Spindle pole body component 97 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=SPC97_DICDI)

HSP 1 Score: 52.0 bits (123), Expect = 1.630e-6
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 VSQDFNTRYWSGRYLLRANHVMASLDSRKEKILTTGKYLNVVR 129
            +++DFN  YW  RY +R + +   L S   KILTTGKYLNVVR
Sbjct:  637 INRDFNDLYWEQRYQIRQDQIPKYLQSHALKILTTGKYLNVVR 679
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BLAST of mRNA_A-nodosum_M_contig11173.1.1 vs. uniprot
Match: A0A3P3Y4S6_PLABS (Spindle pole body component n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y4S6_PLABS)

HSP 1 Score: 52.0 bits (123), Expect = 1.630e-6
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    1 VSQDFNTRYWSGRYLLRANHVMASLDSRKEKILTTGKYLNVVR 129
            + +DFN  YW  RY++R  HV A L     KIL TGKYLNV+R
Sbjct:  624 LERDFNDSYWDERYVVRNEHVPAFLQQFSNKILLTGKYLNVLR 666
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BLAST of mRNA_A-nodosum_M_contig11173.1.1 vs. uniprot
Match: UPI00189F2556 (gamma-tubulin complex component 2 isoform X1 n=4 Tax=Xenarthra TaxID=9348 RepID=UPI00189F2556)

HSP 1 Score: 52.0 bits (123), Expect = 1.630e-6
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    1 VSQDFNTRYWSGRYLLRANHVMASLDSRKEKILTTGKYLNVVR 129
            + +D+N RYW  RY +   H+ A L     KIL+TGKYLNVVR
Sbjct:  438 IQEDYNDRYWDQRYTVVQQHIPAFLQKMAGKILSTGKYLNVVR 480
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11173.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIQ4_9PHAE2.530e-1679.07Spindle pole body component n=1 Tax=Ectocarpus sp.... [more]
D8LBZ5_ECTSI6.250e-1579.07Spindle pole body component n=1 Tax=Ectocarpus sil... [more]
W7U244_9STRA9.730e-853.49Gamma-tubulin complex component 2 n=2 Tax=Monodops... [more]
A0A7S2RS01_9STRA2.410e-753.49Spindle pole body component (Fragment) n=1 Tax=Rhi... [more]
F0ZDB7_DICPU4.660e-753.49Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A835ZJD2_9STRA8.710e-757.50Spc98 family-domain-containing protein n=1 Tax=Tri... [more]
A0A151ZHF0_9MYCE8.710e-751.16Spindle pole body component n=1 Tax=Tieghemosteliu... [more]
SPC97_DICDI1.630e-653.49Spindle pole body component 97 n=1 Tax=Dictyosteli... [more]
A0A3P3Y4S6_PLABS1.630e-653.49Spindle pole body component n=2 Tax=Plasmodiophora... [more]
UPI00189F25561.630e-651.16gamma-tubulin complex component 2 isoform X1 n=4 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11173contigA-nodosum_M_contig11173:12695..12826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LBZ5
PFAMsSpc97_Spc98
Model size132
Max annot lvl2759|Eukaryota
KEGG koko:K16569
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005822,GO:0005824,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008150,GO:0008275,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0031109,GO:0031122,GO:0032153,GO:0032155,GO:0032991,GO:0034622,GO:0043015,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0046785,GO:0048285,GO:0051225,GO:0051258,GO:0051321,GO:0051415,GO:0051418,GO:0065003,GO:0070925,GO:0071840,GO:0090307,GO:0097435,GO:0140014,GO:1902850,GO:1903047
Exons1
Evalue1.02e-15
EggNOG OGsKOG2001@1|root,KOG2001@2759|Eukaryota
Descriptionmicrotubule nucleation by interphase microtubule organizing center
Cds size132
COG categoryH
BRITEko00000,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866516.9360566-CDS-A-nodosum_M_contig11173:12694..128261680866516.9360566-CDS-A-nodosum_M_contig11173:12694..12826Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11173 12695..12826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11173.1.1prot_A-nodosum_M_contig11173.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11173 12695..12826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11173.1.1

>prot_A-nodosum_M_contig11173.1.1 ID=prot_A-nodosum_M_contig11173.1.1|Name=mRNA_A-nodosum_M_contig11173.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=44bp
VSQDFNTRYWSGRYLLRANHVMASLDSRKEKILTTGKYLNVVR*
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mRNA from alignment at A-nodosum_M_contig11173:12695..12826+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11173.1.1 ID=mRNA_A-nodosum_M_contig11173.1.1|Name=mRNA_A-nodosum_M_contig11173.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at A-nodosum_M_contig11173:12695..12826+ (Ascophyllum nodosum dioecious)
GTCTCGCAGGACTTCAACACCCGCTACTGGTCGGGGCGTTACCTTCTGAG
GGCGAACCACGTGATGGCCAGCCTCGATAGTAGGAAAGAGAAGATTCTCA
CCACCGGGAAGTATCTCAACGTCGTCAGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11173:12695..12826+

>mRNA_A-nodosum_M_contig11173.1.1 ID=mRNA_A-nodosum_M_contig11173.1.1|Name=mRNA_A-nodosum_M_contig11173.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=132bp|location=Sequence derived from alignment at A-nodosum_M_contig11173:12695..12826+ (Ascophyllum nodosum dioecious)
GTCTCGCAGGACTTCAACACCCGCTACTGGTCGGGGCGTTACCTTCTGAG
GGCGAACCACGTGATGGCCAGCCTCGATAGTAGGAAAGAGAAGATTCTCA
CCACCGGGAAGTATCTCAACGTCGTCAGGTGA
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