mRNA_A-nodosum_M_contig1117.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1117.1.1
Unique NamemRNA_A-nodosum_M_contig1117.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1117.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1117contigA-nodosum_M_contig1117:2156..4735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2307
Hectar predicted targeting categoryother localisation
Exons2
Cds size1311
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866513.61774-UTR-A-nodosum_M_contig1117:2155..21961680866513.61774-UTR-A-nodosum_M_contig1117:2155..2196Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1117 2156..2196 +
1680866513.6381245-UTR-A-nodosum_M_contig1117:3507..35111680866513.6381245-UTR-A-nodosum_M_contig1117:3507..3511Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1117 3508..3511 +
1680866513.654165-UTR-A-nodosum_M_contig1117:3784..47351680866513.654165-UTR-A-nodosum_M_contig1117:3784..4735Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1117 3785..4735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866513.628426-CDS-A-nodosum_M_contig1117:2196..35071680866513.628426-CDS-A-nodosum_M_contig1117:2196..3507Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1117 2197..3507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1117.1.1prot_A-nodosum_M_contig1117.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1117 2197..3507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1117.1.1

>prot_A-nodosum_M_contig1117.1.1 ID=prot_A-nodosum_M_contig1117.1.1|Name=mRNA_A-nodosum_M_contig1117.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=437bp
MDEIDRVASKDGTFADSDDTQKNKRFSDHASDEMGYVKNKRFAHVACTNL
AFLGMAGTRMAEYCGRHAKDTMVDLREKKRFSHEGRGKKMLFGVDERRTT
GYCVQHAPDKTVGVSSKKRCRTEGCRKQPSFGVAGTKTREYCAQHASDGM
VNVSNIKCRTKGCSKHTSFGVPGTKTREYCAQHAPDGMVNVCDKKCRTKG
CNKQPSFGVAGTKIREYCAQHAPDRMVNVSKKKCRTGGCDKRSSFGATGT
KRAEYCAQHAPDGMVNVSIRKCRTEGYDKQSLFGVAGTKTLEYCAQHAPD
GMVNVVKKKCRTEGCGKRASFPMAGTKTLVYCSRHARNVAKAEEYMGRKA
GPHHSEEETVVNVSPSGVKTKAVHPSASASAHSDGSGDSHKRAQHQDVES
RASLDTARGSTAEGLTMPVTDMIKCASVKTEVLLSL*
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mRNA from alignment at A-nodosum_M_contig1117:2156..4735+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1117.1.1 ID=mRNA_A-nodosum_M_contig1117.1.1|Name=mRNA_A-nodosum_M_contig1117.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2580bp|location=Sequence derived from alignment at A-nodosum_M_contig1117:2156..4735+ (Ascophyllum nodosum dioecious)
AGCGCCGCTATCACGACAACAACAGCTTCGAATACCAAACCATGGACGAG
ATTGATCGCGTCGCTAGCAAGGATGGTACTTTTGCAGATTCGGATGACAC
ACAGAAAAATAAGCGTTTCTCAGACCATGCCTCGGACGAGATGGGCTACG
TCAAGAACAAGAGATTCGCCCATGTCGCCTGCACCAACCTAGCCTTCCTC
GGCATGGCGGGCACAAGAATGGCAGAGTACTGTGGGCGGCACGCCAAGGA
CACGATGGTCGACCTCAGGGAGAAGAAGAGATTTTCCCATGAAGGCCGCG
GCAAAAAAATGTTGTTTGGAGTGGATGAAAGGAGAACGACGGGGTACTGT
GTACAACACGCCCCGGACAAGACGGTCGGCGTCTCCAGCAAGAAGAGGTG
CCGAACAGAAGGATGCAGAAAGCAACCGTCGTTTGGAGTAGCCGGTACAA
AAACACGCGAATACTGCGCTCAACACGCCTCAGACGGGATGGTCAACGTC
TCCAATATAAAGTGTAGAACCAAAGGCTGCAGCAAGCACACCTCCTTTGG
AGTTCCCGGTACGAAAACGAGGGAGTACTGCGCACAACATGCCCCAGACG
GGATGGTCAACGTCTGCGACAAGAAGTGCCGAACCAAAGGCTGCAACAAG
CAACCATCGTTCGGAGTGGCCGGCACAAAAATACGCGAATACTGCGCCCA
ACACGCGCCTGACAGGATGGTCAATGTCTCCAAGAAGAAGTGCAGAACAG
GAGGCTGCGATAAGCGGTCGTCCTTCGGAGCGACCGGTACGAAGAGGGCG
GAGTACTGCGCTCAACACGCCCCGGACGGGATGGTCAACGTCTCAATTAG
AAAGTGTAGAACCGAAGGCTACGATAAGCAGTCGTTGTTCGGAGTGGCCG
GAACGAAAACGCTAGAGTACTGCGCACAACACGCCCCGGACGGGATGGTC
AACGTGGTAAAAAAAAAGTGCCGGACTGAAGGCTGCGGTAAGCGGGCGTC
GTTCCCAATGGCCGGTACCAAAACGCTGGTGTATTGCTCGCGGCACGCCA
GAAACGTGGCGAAGGCTGAGGAATACATGGGGCGAAAGGCTGGTCCACAC
CACTCTGAGGAGGAAACTGTTGTTAACGTAAGTCCCAGTGGCGTAAAAAC
AAAAGCCGTCCATCCTTCTGCCAGTGCAAGTGCTCATTCAGACGGTAGCG
GGGATTCCCATAAGCGAGCACAACACCAAGACGTTGAATCAAGAGCTTCC
ctAGATACCGCCCGTGGATCTACAGCAGAAGGGTTGACTATGCCGGTGAC
CGACATGATAAAGTGCGCTTCTGTAAAGACAGAGGTCTTGCTCTCCTTGT
AGTCAGGTATGTCACACGGGATCGCAAGCCCATGTGGTTTAATTTAGTAA
AGGGTTCGGCCGGGGCTGCTTGGTAGTGTCCATTGCTCCTTTTCTTCAAA
ATATATACTGGTACGGTTTTGTTCCATCGCGAGGCTGCGAAGTTATTTCC
CTTGTTCTTGTTCCTCGCCGATACTCACGATCATGGAGTGCAGCCATTCT
CCAACAAAATACGCCACTCACATTTTTCCTGGTGACCTTGGGCTCCTTGT
GCTGTGATTCTCCCGTTTTCCAAGCTCAGGTTCGATATGGCGTCCAGTCA
GGAACACTGCCTGTGTCATTACTAAATACGCCATGACGTCGCGAGGTCTG
GTGAGTGTTCTGCCGTGCTTTCTTCCGGGACGACTTGGGGCATCTGGGGT
TGTATCAAAGTAGTATCGGGGGCATATTTCTCATTACAGGGCGCGTTTGG
TAGATAGCAAGTTTTCTGTTTTCTTGCCAGGAGCGTGAAGTTCTCCGTCC
TGATGTGGCGGCACGGAAATGAGGACGGCGCTTTAAAGACCTCTTGATAT
ACTTGCCGTACAGTATAACTCTCCGGCCACCATGAATCCCTTTGGATGTG
GCCGGGTTACCACCGCTGGAGGCAAGCACCAGTACAATAAGTACGGTGCG
AAAGGGGCAATAGAGCGGTACTTGATAGAGCTATATAGTAGTATTATACT
GCGCCGAGAGTAGCTCGTTTTGTCCCGGCGCTTCTACCCTAACGCTGGAG
CGTAGCGTACTATAGTATACTGTAGTATATCTCGAGCGCAGCCGCGACGA
TCAGCGCCCCACGTTTGCGTGAGCCGCAGCTTTCTAGCAGCTGTTGTGAC
GTGCCTGATATGAAGAACTCATGCCAGACTTGCGGACAACAGTATATCAG
CGGTATTGCAGTATCTCAATGTTACCGTAGAACTACCTGTACATTGAAGG
TAGCTGTTATTACATGACTCGCCCGGTGCAACTGCTGAGAGAATAGCAAG
GAATCAGTTTGCAAGTAGTAGTTTTGCGGGCAAACGGAAACGAAAAAGAT
TGGCCTACTCAAGTTCCTTAGATTCGTCCAAATGTAACTTTTTTACTCGC
TGTAGCAATTTTCTATCAGAGTTTTTTTCATCCCTCATTTCTATCTTGCG
GAGATTTGATCGTACCTCGATTTATGTGCGCTGACTGGCGATGTCCACTT
CCGTAGGGTTGATCGGAGGGGGATCACGGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1117:2156..4735+

>mRNA_A-nodosum_M_contig1117.1.1 ID=mRNA_A-nodosum_M_contig1117.1.1|Name=mRNA_A-nodosum_M_contig1117.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1311bp|location=Sequence derived from alignment at A-nodosum_M_contig1117:2156..4735+ (Ascophyllum nodosum dioecious)
ATGGACGAGATTGATCGCGTCGCTAGCAAGGATGGTACTTTTGCAGATTC
GGATGACACACAGAAAAATAAGCGTTTCTCAGACCATGCCTCGGACGAGA
TGGGCTACGTCAAGAACAAGAGATTCGCCCATGTCGCCTGCACCAACCTA
GCCTTCCTCGGCATGGCGGGCACAAGAATGGCAGAGTACTGTGGGCGGCA
CGCCAAGGACACGATGGTCGACCTCAGGGAGAAGAAGAGATTTTCCCATG
AAGGCCGCGGCAAAAAAATGTTGTTTGGAGTGGATGAAAGGAGAACGACG
GGGTACTGTGTACAACACGCCCCGGACAAGACGGTCGGCGTCTCCAGCAA
GAAGAGGTGCCGAACAGAAGGATGCAGAAAGCAACCGTCGTTTGGAGTAG
CCGGTACAAAAACACGCGAATACTGCGCTCAACACGCCTCAGACGGGATG
GTCAACGTCTCCAATATAAAGTGTAGAACCAAAGGCTGCAGCAAGCACAC
CTCCTTTGGAGTTCCCGGTACGAAAACGAGGGAGTACTGCGCACAACATG
CCCCAGACGGGATGGTCAACGTCTGCGACAAGAAGTGCCGAACCAAAGGC
TGCAACAAGCAACCATCGTTCGGAGTGGCCGGCACAAAAATACGCGAATA
CTGCGCCCAACACGCGCCTGACAGGATGGTCAATGTCTCCAAGAAGAAGT
GCAGAACAGGAGGCTGCGATAAGCGGTCGTCCTTCGGAGCGACCGGTACG
AAGAGGGCGGAGTACTGCGCTCAACACGCCCCGGACGGGATGGTCAACGT
CTCAATTAGAAAGTGTAGAACCGAAGGCTACGATAAGCAGTCGTTGTTCG
GAGTGGCCGGAACGAAAACGCTAGAGTACTGCGCACAACACGCCCCGGAC
GGGATGGTCAACGTGGTAAAAAAAAAGTGCCGGACTGAAGGCTGCGGTAA
GCGGGCGTCGTTCCCAATGGCCGGTACCAAAACGCTGGTGTATTGCTCGC
GGCACGCCAGAAACGTGGCGAAGGCTGAGGAATACATGGGGCGAAAGGCT
GGTCCACACCACTCTGAGGAGGAAACTGTTGTTAACGTAAGTCCCAGTGG
CGTAAAAACAAAAGCCGTCCATCCTTCTGCCAGTGCAAGTGCTCATTCAG
ACGGTAGCGGGGATTCCCATAAGCGAGCACAACACCAAGACGTTGAATCA
AGAGCTTCCctAGATACCGCCCGTGGATCTACAGCAGAAGGGTTGACTAT
GCCGGTGACCGACATGATAAAGTGCGCTTCTGTAAAGACAGAGGTCTTGC
TCTCCTTGTAG
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