mRNA_A-nodosum_M_contig1116.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1116.17.1
Unique NamemRNA_A-nodosum_M_contig1116.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1116.17.1 vs. uniprot
Match: D8LHJ6_ECTSI (tRNA (Guanine-n(7)-)-methyltransferase complex subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ6_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 8.490e-122
Identity = 270/511 (52.84%), Postives = 312/511 (61.06%), Query Frame = 1 
Query:  904 MLAVVTEDKHVCVWRT---------TTDCKARRLEETQXXXXXXXXXXXXXXXXXXXALLGRRGVPKKPTSVSFAPAAA--ADRGSSGEERGE-VLVITDKCGDAYAAPLPDPSVALKHLLGHTAMTITAMAFLRKGTLLATADRAEHIRVSQFPRTSIVHAYLLGHTDFVSALAPVPGED-SLLLSGGGDGMVGLWDAERGERLAMISVRRACQDLADXXXXXXXXXXXXXXQEEGYGEGVRPPSEGVEGMDLEEGGEGRGKGGGENRTGGAGGGGKAGKGQKVXXXXXXXXXXXXXXXXXXXXXADG--SRKEDEDLIGGDDDEE------HGREGGVPLSIACSEDGRTVAVAVSGLEGLLLLTLSRGEDAEE---------PTMFFVPRGRLQLPAVPIQAGFLDGDLIVALPSSSSDKCLHAFRLTEG-RDGAIPATADTSPAQAKCAAIVSAARAHVLHRDGGEYILKAAVPDDVASEALGGGLRKHKGTRNAGKSSNGWNNFSK 2343
            M+A+ TEDK VCVWRT         TT   A   + ++                    +LG+R +PKKPTSV FAP  A  AD  ++  E+ E V+V++DKCGDAYAAPLPDPS ALKHLLGHTAMTITAM  L++G LLATADRAEHIRVSQFPRT+IVH YLLGH DFVSALA VPGE  ++LLSGGGDG VGLW+AE G  LAMISVR+ACQDLAD                          SEGV  MDLEE                        +G K XXXXXXXXXXXX           G  SR E E   GG   E             VPLS++CSEDGRTVAV VSGLEGLLLL +S G    E          +    PR RLQLP+VPIQAGFLDGDLIVALPS+SS  CL AF L +G  +GA+PA  +T  A+ KC +I + AR     +  G  +L+AAVPD+ A+EALGGGLRKHKGTR+AGKS +GWNNFSK
Sbjct:    1 MVALATEDKQVCVWRTGAGSGTAAGTTGAPADPGDASKATMEAAPAEAAAAASGH---VLGKRELPKKPTSVLFAPVVAPRADGAAATREKTEEVVVVSDKCGDAYAAPLPDPSSALKHLLGHTAMTITAMVTLKRGQLLATADRAEHIRVSQFPRTTIVHTYLLGHQDFVSALAAVPGEGGTMLLSGGGDGRVGLWEAEAGRELAMISVRQACQDLADGDNA----------------------SEGVATMDLEE-----------------------EEGSKXXXXXXXXXXXXXGDASSCKNGDSGADSRGEGEAGSGGVTSETPKGXXXXXXXXXVPLSVSCSEDGRTVAVVVSGLEGLLLLNISHGGGGSEGAEGGAGAGASFSLTPRARLQLPSVPIQAGFLDGDLIVALPSASSADCLQAFSLRDGVGEGAVPA--ETGSAREKCMSINARAR----EQPNGGLVLQAAVPDEDATEALGGGLRKHKGTRSAGKSPDGWNNFSK 457
[Close]
BLAST of mRNA_A-nodosum_M_contig1116.17.1 vs. uniprot
Match: A0A6H5KN97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN97_9PHAE)

HSP 1 Score: 348 bits (894), Expect = 3.000e-107
Identity = 255/506 (50.40%), Postives = 290/506 (57.31%), Query Frame = 1 
Query:  847 TVKRTGSN--AVDLAYSADASMLAVVTEDKHVCVWRTTTDCKARRLEETQXXXXXXXXXXXXXXXXXXXALLGRRGVPKKPTSVSFAPAA---AADRGSSGEERGEVLVITDKCGDAYAAPLPDPSVALKHLLGHTAMTITAMAFLRKGTLLATADRAEHIRVSQFPRTSIVHAYLLGHTDFVSALAPVPGED-SLLLSGGGDGMVGLWDAERGERLAMISVRRACQDLADXXXXXXXXXXXXXXQEEGYGEGVRPPSEGVEGMDLEEGGEGRGKGGGENRTGGAGGGGKAGKGQKVXXXXXXXXXXXXXXXXXXXXXADGSRKEDEDLIGGDDDEEHGREGGVPLSIACSEDGRTVAVAVSGLEGLLLLTLSRGEDAEEPTMFFVPRGRLQLPAVPIQAGFLDGDLIVALPSSSSDKCLHAFRLTEGRDGAIPATADTSPAQAKCAAIVSAARAHVLHRDGGEYILKAAVPDDVASEALGGGLRKHKGTRNAGKSSNGWNNFSKR 2346
            T K  GS+  AVD+AYSADASM+A+ TEDK VCVWRT          E+                     LLGRR +PKKPTS+ FAP     A    ++ E+  EV+V++DKCGDAYAAPLPDPS ALKHLLGHTAMTITAM  L+ G LLATADRAEH+RVSQFPRT+IVH YLLGH DFVSALA VPGE  ++LLSGGGDG VGLWDAE G  LAMISVR+ACQDLAD                          SEGV  MDLEE                     + G  +  XXXXXXXXXXXXXXXXXXX       + +          E  +                                              PR RLQLP+VPIQAGFLDGDLIVALPS+SS  CL AF L +G  G  P  A T  A+ KC +I + AR     +  G  +L+AAVPDD A+EALGGGLRKHKGTRNAGKS +GWNNFSKR
Sbjct:   89 TTKGAGSSGAAVDIAYSADASMVALATEDKQVCVWRTGA--------ESGTTAGTAEAPAEAAAAAESGHLLGRRELPKKPTSILFAPVVVPRADGAAATREKTQEVVVVSDKCGDAYAAPLPDPSSALKHLLGHTAMTITAMVTLKGGQLLATADRAEHVRVSQFPRTTIVHTYLLGHQDFVSALAAVPGEGGAMLLSGGGDGRVGLWDAEAGRELAMISVRQACQDLADGDDA----------------------SEGVATMDLEE---------------------EEGSKEXXXXXXXXXXXXXXXXXXXXXKNGVADSRGEXXXXXXXXXXETPKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLTPRARLQLPSVPIQAGFLDGDLIVALPSASSADCLQAFSLRDGV-GEGPVPAKTGSAREKCMSINARAR----EQPNGGLVLQAAVPDDDATEALGGGLRKHKGTRNAGKSPDGWNNFSKR 538
[Close]
BLAST of mRNA_A-nodosum_M_contig1116.17.1 vs. uniprot
Match: A0A6P5AL06_BRABE (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5AL06_BRABE)

HSP 1 Score: 99.0 bits (245), Expect = 2.840e-18
Identity = 50/127 (39.37%), Postives = 75/127 (59.06%), Query Frame = 1 
Query: 1141 RGEVLVITDKCGDAYAAPLPDPSVALKHLLGHTAMTITAMAFLRKGTLLATADRAEHIRVSQFPRTSIVHAYLLGHTDFVSALAPVPGEDSLLLSGGGDGMVGLWDAERGERLAMISVRRACQDLAD 1521
            RG+ ++  DK GD Y+  + DP      LLGH +M +  +A     + L T DR E IR+S +P T  ++ Y LGHT++++AL   P  D +LLSGGGDG V +WD  +G+ L +  + + C+ L D
Sbjct:  125 RGDTILAADKSGDVYSFSVSDPEAPGTLLLGHLSMLLD-IAIKDDDSFLVTCDRDEKIRISHYPNTHSIYGYCLGHTEYITALCLSPYPDGILLSGGGDGTVRVWDWLKGKELHVEHLAKFCRGLKD 250
[Close]
BLAST of mRNA_A-nodosum_M_contig1116.17.1 vs. uniprot
Match: A0A8H3ZVV6_GIGMA (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82 n=3 Tax=Gigaspora TaxID=4873 RepID=A0A8H3ZVV6_GIGMA)

HSP 1 Score: 95.5 bits (236), Expect = 4.840e-17
Identity = 58/157 (36.94%), Postives = 80/157 (50.96%), Query Frame = 1 
Query: 1051 LLGRRGVPKKPTSVSFAPAAAADRGSSGEERGEVLVITDKCGDAYAAPLPDPSV---ALKHLLGHTAMTITAMAFLRKGTLLATADRAEHIRVSQFPRTSIVHAYLLGHTDFVSALAPVPGEDSLLLSGGGDGMVGLWDAERGERLAMISVRRACQD 1512
            LL  R VPK+  S++F+            E G  +V  DK GD Y+ P+          K LLGH +M +T M        + TADR EHIRVSQFP+   + +Y  GHT F+S L  +P +  LLLS GGD  + LWD   G  +  + ++   Q+
Sbjct:  104 LLNTRPVPKRVVSIAFS------------EDGSQIVTADKFGDVYSYPINSTESIENTSKLLLGHVSM-VTDMVLTPNNKFVITADRDEHIRVSQFPKGYNIKSYCFGHTQFLSKLHILPWDSDLLLSAGGDDFIALWDYVPGRLIQTLDIKNLIQN 247
[Close]
BLAST of mRNA_A-nodosum_M_contig1116.17.1 vs. uniprot
Match: A0A835YKU1_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKU1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.980e-16
Identity = 64/216 (29.63%), Postives = 94/216 (43.52%), Query Frame = 1 
Query: 1051 LLGRRGVPKKPTSVSFAPAAAADRGSSGEERGEVLVITDKCGDAYAAPLPDPSVALKHLLGHTAMTITAMAFLRKGTL-----------------------------------------------------LATADRAEHIRVSQFPRTSIVHAYLLGHTDFVSALAPVP---------------GEDSLLLSGGGDGMVGLWDAERGERLAMISV 1494
            ++G+R VPKK T++ FA AA            +VL+ +DK GD +A+P+PD   A+KHLLGHTA  +T M   R  +                                                      L T DRAEH+RV++FP T ++ ++L+GHTD+++A+A  P               GE   +++   DG V LW    GER  +  V
Sbjct:   95 VIGKREVPKKATALLFADAAGK----------QVLLASDKFGDVWASPVPDIGSAVKHLLGHTATCVTCMTMCRHSSTPCAIRARDHLYLHRKPTPHAHAAAISPYYQNQAVDKVYSQKMLPLARHGGQQYLVTGDRAEHVRVTRFPLTPLIQSFLVGHTDYITAVAAAPPSXXXXXXXXGGHDPGESDRIVTAAADGTVALWRLLSGERCCVADV 300
[Close]
BLAST of mRNA_A-nodosum_M_contig1116.17.1 vs. uniprot
Match: WDR4_XENLA (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 n=6 Tax=Xenopus laevis TaxID=8355 RepID=WDR4_XENLA)

HSP 1 Score: 89.0 bits (219), Expect = 4.350e-15
Identity = 51/153 (33.33%), Postives = 84/153 (54.90%), Query Frame = 1 
Query: 1063 RGVPKKPTSVSFAPAAAADRGSSGEERGEVLVITDKCGDAYAAPLPDPSVALKHLLGHTAMTITAMAFLRKGTLLATADRAEHIRVSQFPRTSIVHAYLLGHTDFVSALAPVPGEDSLLLSGGGDGMVGLWDAERGERLAMISVRRACQDLAD 1521
            R V ++ T+++F+P             G  +++ DK GD ++  +P      +  LGH +M +     L  G  + T DR E IRVS +    ++ ++ LGHT+FVS L P+PG++ LLLSG GDG + LW+ E G+ +  +++R    +L D
Sbjct:   93 RWVSRRCTALTFSPC------------GNHILVADKSGDVFSFSVPRALEQGRLELGHLSMLLDVTVSL-DGKHIITCDRDEKIRVSCWGAPHVIMSFCLGHTEFVSQLLPLPGQEKLLLSGSGDGTLRLWEYESGKEVHSVTLRSLAHELED 232
[Close]
BLAST of mRNA_A-nodosum_M_contig1116.17.1 vs. uniprot
Match: A0A1Y3NQB0_PIRSE (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82 n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NQB0_PIRSE)

HSP 1 Score: 87.8 bits (216), Expect = 7.570e-15
Identity = 62/222 (27.93%), Postives = 103/222 (46.40%), Query Frame = 1 
Query:  850 VKRTGSNAVDLAYSADASMLAVVTEDKHVCVWRTTT-DCKARRLEETQXXXXXXXXXXXXXXXXXXXALLGRRGVPKKPTSVSFAPAAAADRGSSGEERGEVLVITDKCGDAYAAPLPDPSVALKHLLGHTAMTITAMAFLRKGTLLATADRAEHIRVSQFPRTSIVHAYLLGHTDFVSALAPVPGEDSLLLSGGGDGMVGLWDAERGERLAMISVRRACQD 1512
            VK+T  N   + ++ DAS+LAV ++DK++  W   T +C                              L  +  PKK  S+ F            E  G  +++ D  GD Y   + D     K +LGH +M +T +   +    + T+DR E IR++ +P+T I+  + LGH +++S +  +P  +SLLLSGGGD  + LWD    + +  I ++   +D
Sbjct:   41 VKKT--NIRSINFNNDASILAVASDDKNLKFWNVKTGEC------------------------------LLTKNTPKKVNSLVF------------ENNGRNVLVADGFGDVYRYSVDDSEENGKLMLGHVSM-LTDILLSKDEKYVITSDRDEKIRITNYPKTYIIKTFCLGHKEYISKMHFIPNNESLLLSGGGDEYLFLWDFINAKIIQKIDIKTLIED 217
[Close]
BLAST of mRNA_A-nodosum_M_contig1116.17.1 vs. uniprot
Match: A0A026WVW6_OOCBI (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wuho n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026WVW6_OOCBI)

HSP 1 Score: 87.8 bits (216), Expect = 9.720e-15
Identity = 55/149 (36.91%), Postives = 78/149 (52.35%), Query Frame = 1 
Query: 1051 LLGRRGVPKKPTSVSFAPAAAADRGSSGEERGEVLVITDKCGDAYAAPLPDPSVALKHLLGHTAMTITAMAFLRKGTLLATADRAEHIRVSQFPRTSIVHAYLLGHTDFVSALAPVPGEDSLLLSGGGDGMVGLWDAERGERLAMISVR 1497
            LL  R + +  + V F+P+               +V+ DK GDAY      P+ A   LLGH +M +  +       +L T DR E IRVS FP    + +Y LGH  FV+ ++ +P + S+LLS GGDG++ LWD ERG  L  I+ R
Sbjct:   89 LLSNRELARAASKVKFSPS-------------NDIVVADKAGDAYLFSTSSPTEAGVLLLGHLSMLLDVLITCDMRYILTT-DRDEKIRVSMFPNCYNIMSYCLGHEKFVTNISELPHDKSILLSCGGDGILNLWDYERGIELRSINFR 223
[Close]
BLAST of mRNA_A-nodosum_M_contig1116.17.1 vs. uniprot
Match: A0A1Y1VJ58_9FUNG (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82 n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VJ58_9FUNG)

HSP 1 Score: 87.4 bits (215), Expect = 1.010e-14
Identity = 61/221 (27.60%), Postives = 104/221 (47.06%), Query Frame = 1 
Query:  850 VKRTGSNAVDLAYSADASMLAVVTEDKHVCVWRTTTDCKARRLEETQXXXXXXXXXXXXXXXXXXXALLGRRGVPKKPTSVSFAPAAAADRGSSGEERGEVLVITDKCGDAYAAPLPDPSVALKHLLGHTAMTITAMAFLRKGTLLATADRAEHIRVSQFPRTSIVHAYLLGHTDFVSALAPVPGEDSLLLSGGGDGMVGLWDAERGERLAMISVRRACQD 1512
            VK+T   +++  ++ DAS+LAV ++DK++  W   T                               LL +   PKK  S+ F            E  G+ +++ D  GD Y   + D     K ++GH +M +T +   R    + T+DR E IRV+++P+T I+  +  GH +++S +  +P  +SLLLSGGGD  + LWD    + +  I ++   +D
Sbjct:   41 VKKTSIRSIN--FNNDASILAVASDDKNLKFWDVNTG----------------------------KCLLAKN-TPKKVNSLVF------------ENNGKNVLVADGFGDVYRYSIIDSEENGKLMMGHVSM-LTDILLSRDEKYILTSDRDEKIRVTKYPKTYIIKNFCFGHKEYISKMCFIPNNESLLLSGGGDDYLFLWDYVNAKVIQKIDIKTLIED 217
[Close]
BLAST of mRNA_A-nodosum_M_contig1116.17.1 vs. uniprot
Match: A0A060THV4_BLAAD (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit TRM82 n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060THV4_BLAAD)

HSP 1 Score: 87.4 bits (215), Expect = 1.090e-14
Identity = 52/152 (34.21%), Postives = 82/152 (53.95%), Query Frame = 1 
Query: 1048 ALLGRRGVPKKPTSVSFAPAAAADRGSSGEERGEVLVITDKCGDAYAAPLPDPSVALKH--------LLGHTAMTITA-MAFLRKGTLLATADRAEHIRVSQFPRTSIVHAYLLGHTDFVSALAPVP-GEDSLLLSGGGDGMVGLWDAERGE 1473
            +L+ RR  PK+P+++              +   + LV+ DK GD YA P+      +K         +LGH +M +   M        + TADR EHIRV+++P++ ++  +L GH +FVS++  +P G+ +LL+SGGGD  V LWD   GE
Sbjct:   87 SLISRRPFPKRPSAI--------------DSTKDALVVGDKFGDVYAVPITSMDSVIKEEGDASIEPILGHVSMLVDVKMGEFNGREYVITADRDEHIRVTRYPQSYVIERWLFGHEEFVSSVEVLPWGDKNLLVSGGGDDSVFLWDWTTGE 224
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1116.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHJ6_ECTSI8.490e-12252.84tRNA (Guanine-n(7)-)-methyltransferase complex sub... [more]
A0A6H5KN97_9PHAE3.000e-10750.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P5AL06_BRABE2.840e-1839.37tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
A0A8H3ZVV6_GIGMA4.840e-1736.94tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
A0A835YKU1_9STRA1.980e-1629.63XRN 5'-3' exonuclease N-terminus-domain-containing... [more]
WDR4_XENLA4.350e-1533.33tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
A0A1Y3NQB0_PIRSE7.570e-1527.93tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
A0A026WVW6_OOCBI9.720e-1536.91tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
A0A1Y1VJ58_9FUNG1.010e-1427.60tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]
A0A060THV4_BLAAD1.090e-1434.21tRNA (guanine-N(7)-)-methyltransferase non-catalyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1116contigA-nodosum_M_contig1116:183637..189890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHJ6
Preferred nameTRM82
PFAMsWD40
Model size2349
Max annot lvl2759|Eukaryota
KEGG rclassRC00367,RC00942
KEGG koko:K01968,ko:K15443
KEGG ReactionR04138
KEGG Pathwayko00280,ko01100,map00280,map01100
KEGG ModuleM00036
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001510,GO:0001673,GO:0001674,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030488,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036265,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0046483,GO:0048232,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0051704,GO:0071704,GO:0090304,GO:0106004,GO:1901360,GO:1902494,GO:1990234
Exons7
Evalue5.75e-126
EggNOG OGsKOG3914@1|root,KOG3914@2759|Eukaryota
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-10_002140.1
EC6.4.1.4
DescriptionRNA (guanine-N7)-methylation
Cds size1566
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1116.17.1prot_A-nodosum_M_contig1116.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1116 184420..189890 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866512.9305167-UTR-A-nodosum_M_contig1116:183636..1844191680866512.9305167-UTR-A-nodosum_M_contig1116:183636..184419Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1116 183637..184419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866512.944254-CDS-A-nodosum_M_contig1116:184419..1847851680866512.944254-CDS-A-nodosum_M_contig1116:184419..184785Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1116 184420..184785 +
1680866512.9559178-CDS-A-nodosum_M_contig1116:185794..1859711680866512.9559178-CDS-A-nodosum_M_contig1116:185794..185971Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1116 185795..185971 +
1680866512.9639282-CDS-A-nodosum_M_contig1116:186473..1866221680866512.9639282-CDS-A-nodosum_M_contig1116:186473..186622Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1116 186474..186622 +
1680866512.9742694-CDS-A-nodosum_M_contig1116:186920..1873611680866512.9742694-CDS-A-nodosum_M_contig1116:186920..187361Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1116 186921..187361 +
1680866513.0465431-CDS-A-nodosum_M_contig1116:188544..1887091680866513.0465431-CDS-A-nodosum_M_contig1116:188544..188709Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1116 188545..188709 +
1680866513.0565157-CDS-A-nodosum_M_contig1116:189095..1892111680866513.0565157-CDS-A-nodosum_M_contig1116:189095..189211Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1116 189096..189211 +
1680866513.0646565-CDS-A-nodosum_M_contig1116:189738..1898901680866513.0646565-CDS-A-nodosum_M_contig1116:189738..189890Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1116 189739..189890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1116.17.1

>prot_A-nodosum_M_contig1116.17.1 ID=prot_A-nodosum_M_contig1116.17.1|Name=mRNA_A-nodosum_M_contig1116.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=522bp
MCAVNYLSQESSVDHDHEQGQTVKRTGSNAVDLAYSADASMLAVVTEDKH
VCVWRTTTDCKARRLEETQQPSSPPPPGGGMGTSRRRRALLGRRGVPKKP
TSVSFAPAAAADRGSSGEERGEVLVITDKCGDAYAAPLPDPSVALKHLLG
HTAMTITAMAFLRKGTLLATADRAEHIRVSQFPRTSIVHAYLLGHTDFVS
ALAPVPGEDSLLLSGGGDGMVGLWDAERGERLAMISVRRACQDLADDDEQ
PPPREDESRRQEEGYGEGVRPPSEGVEGMDLEEGGEGRGKGGGENRTGGA
GGGGKAGKGQKVEKSGELRGSGRDSERGDGAGGADGSRKEDEDLIGGDDD
EEHGREGGVPLSIACSEDGRTVAVAVSGLEGLLLLTLSRGEDAEEPTMFF
VPRGRLQLPAVPIQAGFLDGDLIVALPSSSSDKCLHAFRLTEGRDGAIPA
TADTSPAQAKCAAIVSAARAHVLHRDGGEYILKAAVPDDVASEALGGGLR
KHKGTRNAGKSSNGWNNFSKR*
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mRNA from alignment at A-nodosum_M_contig1116:183637..189890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1116.17.1 ID=mRNA_A-nodosum_M_contig1116.17.1|Name=mRNA_A-nodosum_M_contig1116.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6254bp|location=Sequence derived from alignment at A-nodosum_M_contig1116:183637..189890+ (Ascophyllum nodosum dioecious)
AGAGACACACCCAAGCTGCCACCTCTTGTCAATCAGCCGGCTGGGTCGGG
TAGACAGCCAGTTGATGTCACCTCTCGAGGGTGAGTCCCGCCTTACACCC
ACCGGAAAGATCCCAAGTAGCTTCTGCCGTCTCTTGTAGCAAAACAATCG
CACGTCGTGCCACGCTTAGTTGCTGAGAACGCTGGCCGTGGTTAGGCGCT
CTGAGAATCCGAGATCGAGGTTACTCTCGATATGGAGTAAGGAGGTTTGA
TGATGAACAGTGTTGACATTAGTCAGTGCCATTGCTTGTAAAGTGTCGCA
TGCATAACTTGTCTTGGTGTAACCCCTCCGATAGCTATGGGAAAACTTTT
TGAGTCACTTTTTGATGACTTTGATTGGTGGATGGGCAGCAAGCACATCA
AACTTTTTTCTCTGTAGCTTGTAATTCAGATTCTGAAAAACGGGCAGCAC
TCCAGACAATAGAAACTGTAGTTCGTACCCAAAGACATGGTCTTGACGCC
GATAAGTTTCCGATGTTCTCGGTTGGTTGGACCTGGCAAGGATTTTGTTG
TCGCGACTTGGATCTCTGTTGGTTTGAGCCGCAGGTGGTCATCATGACGT
GACCCGTTGATAGGCCTATGGCTGAATCGTTGTCTCACCGTAGTTTCTTC
AGTTGCAGGGACAATACGCTGAATGTGTGAAACAACAACAACTCCCCTCC
CCTTCCCTCCAATCTCTTAAAACTGTCTGGCCTCTTGGGCCCTCGAACGA
GGCAACAACAGCAGCAGCGAGCAGGGGCAGCAGATGTGCGCCGTCAACTA
CCTCTCCCAGGAGTCGTCAGTCGACCACGATCACGAACAGGGGCAGACAG
TGAAGAGAACGGGCTCCAACGCGGTCGACCTCGCCTACTCCGCGGACGCT
TCCATGCTCGCCGTAGTCACGGAGGACAAGCACGTCTGCGTGTGGCGCAC
CACCACCGACTGCAAAGCGCGGCGCCTCGAGGAGACACAGCAGCCATCTT
CTCCGCCACCGCCGGGGGGGGGAATGGGAACGTCGCGGAGACGGCGAGCG
CTCCTCGGTCGCCGAGGGGTTCCCAAGAAACCGACCAGCGTTTCGTTCGC
GCCGGCCGCGGCTGCAGATCGCGGGAGCAGTGGCGAGGAGAGAGGGGAGG
TGTGTCTGTGTCCGCGCGTATTTTTCAGAGAGAAATATAGAGATGACGCA
TGATATCGCGTACAAGTACAGTACTATTTATGATAGTACGGTTGTCAACA
CCGCCGGCTTTGCCTTACGCCGCTTGGTTTGGTGTAATAATGTGTACGTG
CACGCGCGCGCGTATGTGTGTGGGTGTCTGAATGGGTTTTATAGAGAGGC
GGAAATCGTTCCGTCATTTTTTGCCGTGCTTGAAGAGTTTTGATAATATG
AGCCCGATCCCAATCAAGTACTTGCGCGCATGGATTCTTTTTTTTTGCTG
CTTTTGACGATTGGGTGTGGCGTGACAGGGCATACTGTAAATTAGTGCAG
TACACCATTTCTGCTGTAAATGATGGTTATTCATACTTGTATACAAAAAA
GTATGCGGAGACACACCGCGCGAACACAGCGCGGGGCGTCAAAGGGCATC
AAGCGCGCGACAAGAACGGGGACCCTCGCGCGGGGGCGGGAGAGAGCGGC
GGGCGTGTTTTGAGGCCGGCTCTGATTCACGCTTGAGTTGTTCCAGCGGG
ATTTCATCCCTCGTTGCACATAAAAAAGTATGACTTCTTTAGCCTTCTGC
CTACCCTCCCCGTCACCCTCGCGCGGAGGCAGGGGAGGGTGGCGGGCGTG
TTTTGGGGCCGGCTTTGATTCGCGCTTGAGTCGTTCCAGCGAGGTTCGTC
CCTCCTTAAAACAAATAAAAATGTGACCGCTTTGGCCTTCTGCCTCCCCC
CTCTCCGCCTTTGTGGCGCCGATTACTAAGATTAAATATACTGGTATTGC
CCGTGTGATTATCCACCTTCACCTGCCTCCCGCCCACCCACCCCTAACCT
AACCCTCGCCCCACCCCTGCTCCGCAAAATCCCCCCAAAAAATAAATAAA
TGAATAATGATAGAATAAAATAAACGAACCCGAGCGGCACCCTTGTTGAC
ACCCTCACGCCTCCCCATCGCTCTTAAAAACCGGAAATGGACGGCTTGAA
ACATGAAGGTTCTTGTCATCACTGACAAGTGCGGGGACGCTTACGCGGCG
CCCCTGCCGGACCCTTCCGTCGCGCTGAAGCACCTGCTCGGCCACACCGC
TATGACGATTACTGCGATGGCCTTCCTCAGAAAGGGGACGCTGCTGGCCA
CCGCCGATCGCGCGGAGCACATCAGGGTTTCCCAGGTGCACGAGGCTTTC
CCCCTATGGTGAATAGGGGAGAAGTGTTCGTTGGCGCTGCCACTGGTTGC
TGCTGTAGCCCCACAATATTTTCAAGTCGTTTTGAAAGTCTGCTTCATGA
CTGGTCTTCGGGAGGCTTGATCGGCTCCGTCGCATGGATTGATACTGTAG
AGTGCATGTTATGAATGCGGGCTATAGAGGTTACAGGGGTGCTTTGCCTC
CTCGGGCTAGCCATTATATTTTATTCTGATGGCACCATGACTCCCGCTTC
AGCCCCCCCCCCCCCGACCCCCACCCCGCACCCCCTGCAAGGAATAAAAC
AGGACCTCGCCAATCACCAATCAGTCTGTCGTTGACTGGCTGAGGTGAGC
ACACTGGATCCTGTACCTCCCGCCGTCCTTTTTCTGTCCCCCCATACCTC
TCGCGCGGCGTCTCTTGTTATCTTGTTATCTGTAATTCCTCTCTCCAAAC
CGGCGTTCTACTTGCTGCGCCTGCTGCACGCGCGCAGTTCCCTCGTACGA
GCATTGTCCACGCGTACCTCTTGGGGCACACAGACTTCGTCTCGGCCCTC
GCGCCGGTGCCCGGGGAAGACTCGCTTTTGCTGTCGGGGGGCGGGGACGG
GATGGTAGGGCTTTGGGACGCCGAGCGTGGAGAGAGGTAACCTGTCGTAG
AAGAAAGCGGTATCTTGTGGAGAGAAATCATGTGCGACACACACAGGGGT
ACAAGAGCTATGATGCTTATACTTGTGCGTGTGTCTTTTTACAGGTACCT
GGTTGATGCATTTTCACTGTATACGTTTTTTGTTTGATTTTTTCAGATTC
GTACCAAGTTTTTCTTCGGTATGAAAACAGCTCTCGGGGGAAATCGCCCG
TTCCCCGCAGGGCTAGAACCGGGGTATATAGATTGAGCACACATCTTTTG
CCGTGGCCTGCCTTGGCCGTTTGGTGATATGCAGGCTCGCGATGATCTCC
GTACGGCGGGCGTGCCAAGACTTGGCCGACGACGACGAGCAGCCTCCTCC
GAGAGAAGATGAAAGCCGACGCCAAGAAGAGGGATATGGAGAAGGTGTAC
GCCCTCCCTCCGAGGGAGTTGAAGGGATGGATCTGGAGGAGGGGGGGGAA
GGGCGGGGGAAGGGGGGAGGGGAAAACAGAACCGGTGGAGCAGGTGGCGG
CGGCAAGGCGGGAAAAGGCCAGAAAGTAGAGAAGAGCGGGGAGCTCCGCG
GGAGCGGGAGAGACTCAGAAAGGGGAGATGGTGCAGGCGGTGCCGACGGA
AGTCGGAAGGAGGACGAGGATCTCATAGGAGGGGATGACGATGAGGAACA
TGGACGAGAAGGTGGTGTGCCTCTAAGCATCGCTTGCAGCGAGGACGGCA
GGACAGTCGCCGTCGCGGTGAGCGGGTAAGTTGGTGTTGGGGAGGGGGGG
GGGGAAGGGGGGGTTACTCTCGGGGAGACTTGTGACTTGCTGCTGCTTGC
TTCGTGTGAGTACCCATCCGCTCTGGCAGCACTTCTGACAGTAGAAACTG
TAGGTCGTACCCAAAGACATCGTCTTGACGCCGATTAGTTTCCGATGTTC
TCGGGTGGTCGGACCTGACAAGGATTTTGTCACGATTTGGATTATTGTTG
GTTTGAGTAGCGGGTTGTCACCATGCTGTGACCCGTTGACCTTCGTACCT
CTTTGTGATCACGTGCGGGATTGGCATTTGATAGGTCTATATGGCTGACT
CGTTGTGTCACCGTCACTGTTATTTCCTCACTTGCAAAAACAAAACGCTG
AATGTGTGAATCAATAACAACAACTGGTCAAGGGTTGTTGACGAAACGCG
TCCGTATCGCAAGCAAGCGCTTCGTGACTGTGTTCCAAGCCTACGGAGTG
TCCGCTTTGCGGTGAGAGGAAGAGACAGTCCGGGAGGTTCCCCGTCAGCA
GACTTTGTGCGCGATGGTGAAGAAGGTTTTACCAAAATGCCTCATGAGAG
CGTTGCGCGCTCTAGAGCACGTGCTGCTTGGCGAAGAACCTCCCCTTCCC
CCCaCTCCCCCTTTTTTTTCGGTGGGCCTATTTGCCGTGCTAGTGCTAAA
TAATAGTTTTACCAATCTACGAGGTAATGGGCCGCGGTCGGCGGACAGGG
GCTATTTTCTCGAGTCATTCCCAGCTCTATACCTCTATACTCCATAGAGG
CGGGAAAAGGAGGGGAGGGGGGGGGGGGGAATCTCTGCGGTTCGATAGCA
GGAGCTTGCCTCGTTCTGGCACTGATGATGCACGCTTATCCCGCAAAATA
CAGCCGTTAATGGATACAATCTAATCATCGTGAACCTTTTCTTGGAACGT
CATGAGCCTATATTGGAACGTTGTGAACCTTAAGATATCTTCTACGTTCT
TAGTTGGGGGGGAAAGAGTACTTTAGGCAGAATCCTGCCCACCAGGAGCG
AAAATCAACCTCTCCAGAAGACACCGCACTTTAGTTTTGCGTGTCATCGC
CTCGCCTTGCCTGCTTTCTTTTGGTTTGACTTGAAATAACCATTGTCCTC
GCCGTCGCATCCGCCCCCCCCCCCCCCCAAACGCGTTCCCACACCCGCGC
AAAACAAGCCTGGAGGGTCTTCTTTTGCTGACGCTGTCGCGTGGCGAAGA
CGCCGAAGAACCAACGATGTTTTTTGTCCCGCGGGGACGCTTGCAACTAC
CCGCAGTGCCGATTCAAGCCGGGTTCCTCGACGGCGATCTCATCGTGGCC
CTTCCCTCCTCCTCTTCCGACAAGTGGGTTTGCATTACTTTGCGTGGGAT
TGTATTTTTAAGTAAACAAGGGAGGGGGGCAGGGGGAGGGGGAGGGCGGG
CAACTAACGGGTCCTGGCGTAGAAGCTACTATCCGTAACGTTCTCTTTAT
CTGTTTGATGCGGCAGACGGTAAACATGGCGAAACGTGAAGCGCTCGCCT
GGACCTCTCTCTCACTTGCACCATTTCTTTTCTTCCATCAAAAGCATCCT
TCGGTACGTTGTCTGAGCTCTCTAGTTTTTTTTTCAGCACATCGAAACTG
GTTGGTAAGAACGCTCGAGTACGTACCCTCAAGGCACGGTGCTCCGTTCC
ATTCCTTTCCTGCCCGCCACGCTGACTTTCGGCCCTCTGGCGCACTCTGG
CGTTTCCAGGTGCTTACATGCGTTTCGACTCACGGAAGGCCGTGACGGAG
CCATACCGGCTACTGCGGACACCAGCCCGGCGCAAGCGAAATGCGCGGCG
ATTGTCTCCGCTGCGAGGGCTCACGGTACGGTCAATGGTCATGAAGCACT
TTATATTCAAGTCAAGGGCTTATTTCTGAGGTCGGTGGGCTTGGGGAAAA
GGTTAGCCTCTTCGGCGATACATTTGGTACAGTATGTTACCTTCGTGCGG
GAAAAGGTACCCACTTTTTGCGAGAAGGTCACCCTCGCCCACCCTTTCCT
GGGCGGGGAAATCATGACTCTCTCTCTCTCTCCCCTCCCCCCCCATTCCC
TCAACGTCGAACTGACAGGTTCCCCTTTTCATTGGCATTCCCGGTTGGCC
ACAATGATCTGTATAGTCCCTCATATCATGGGCTCTACTCTAAATTGTAA
TCGTAACATGCCCGATCGCGGAATCAAAGTATTTGGAGCGAACACGTGGA
CCCTTCGGACTCTCGCCGCGGTCGCATCCGAGTTGTTCCTTCCGCCTAAT
CCCAACTCCATGAATGCTTTGACATAGCCAGCCAACCCCCCCCCCCCCGT
GACTGCAACAACGATTCCATTCTCGGCTTGATTTTAACCGACCCAGACCC
AGTCTTGCATCGCGACGGCGGCGAGTACATCTTGAAGGCGGCCGTGCCTG
ACGACGTCGCCAGCGAGGCGCTGGGCGGGGGGCTCAGAAAGCACAAGGGC
ACGCGTAATGCCGGCAAGAGCTCTAACGGCTGGAACAACTTTAGCAAGAG
GTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1116:183637..189890+

>mRNA_A-nodosum_M_contig1116.17.1 ID=mRNA_A-nodosum_M_contig1116.17.1|Name=mRNA_A-nodosum_M_contig1116.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at A-nodosum_M_contig1116:183637..189890+ (Ascophyllum nodosum dioecious)
ATGTGCGCCGTCAACTACCTCTCCCAGGAGTCGTCAGTCGACCACGATCA
CGAACAGGGGCAGACAGTGAAGAGAACGGGCTCCAACGCGGTCGACCTCG
CCTACTCCGCGGACGCTTCCATGCTCGCCGTAGTCACGGAGGACAAGCAC
GTCTGCGTGTGGCGCACCACCACCGACTGCAAAGCGCGGCGCCTCGAGGA
GACACAGCAGCCATCTTCTCCGCCACCGCCGGGGGGGGGAATGGGAACGT
CGCGGAGACGGCGAGCGCTCCTCGGTCGCCGAGGGGTTCCCAAGAAACCG
ACCAGCGTTTCGTTCGCGCCGGCCGCGGCTGCAGATCGCGGGAGCAGTGG
CGAGGAGAGAGGGGAGGTTCTTGTCATCACTGACAAGTGCGGGGACGCTT
ACGCGGCGCCCCTGCCGGACCCTTCCGTCGCGCTGAAGCACCTGCTCGGC
CACACCGCTATGACGATTACTGCGATGGCCTTCCTCAGAAAGGGGACGCT
GCTGGCCACCGCCGATCGCGCGGAGCACATCAGGGTTTCCCAGTTCCCTC
GTACGAGCATTGTCCACGCGTACCTCTTGGGGCACACAGACTTCGTCTCG
GCCCTCGCGCCGGTGCCCGGGGAAGACTCGCTTTTGCTGTCGGGGGGCGG
GGACGGGATGGTAGGGCTTTGGGACGCCGAGCGTGGAGAGAGGCTCGCGA
TGATCTCCGTACGGCGGGCGTGCCAAGACTTGGCCGACGACGACGAGCAG
CCTCCTCCGAGAGAAGATGAAAGCCGACGCCAAGAAGAGGGATATGGAGA
AGGTGTACGCCCTCCCTCCGAGGGAGTTGAAGGGATGGATCTGGAGGAGG
GGGGGGAAGGGCGGGGGAAGGGGGGAGGGGAAAACAGAACCGGTGGAGCA
GGTGGCGGCGGCAAGGCGGGAAAAGGCCAGAAAGTAGAGAAGAGCGGGGA
GCTCCGCGGGAGCGGGAGAGACTCAGAAAGGGGAGATGGTGCAGGCGGTG
CCGACGGAAGTCGGAAGGAGGACGAGGATCTCATAGGAGGGGATGACGAT
GAGGAACATGGACGAGAAGGTGGTGTGCCTCTAAGCATCGCTTGCAGCGA
GGACGGCAGGACAGTCGCCGTCGCGGTGAGCGGCCTGGAGGGTCTTCTTT
TGCTGACGCTGTCGCGTGGCGAAGACGCCGAAGAACCAACGATGTTTTTT
GTCCCGCGGGGACGCTTGCAACTACCCGCAGTGCCGATTCAAGCCGGGTT
CCTCGACGGCGATCTCATCGTGGCCCTTCCCTCCTCCTCTTCCGACAAGT
GCTTACATGCGTTTCGACTCACGGAAGGCCGTGACGGAGCCATACCGGCT
ACTGCGGACACCAGCCCGGCGCAAGCGAAATGCGCGGCGATTGTCTCCGC
TGCGAGGGCTCACGTCTTGCATCGCGACGGCGGCGAGTACATCTTGAAGG
CGGCCGTGCCTGACGACGTCGCCAGCGAGGCGCTGGGCGGGGGGCTCAGA
AAGCACAAGGGCACGCGTAATGCCGGCAAGAGCTCTAACGGCTGGAACAA
CTTTAGCAAGAGGTAA
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