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Homology
BLAST of mRNA_A-nodosum_M_contig1115.6.1 vs. uniprot
Match: D7FYD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYD6_ECTSI) HSP 1 Score: 244 bits (624), Expect = 1.400e-70 Identity = 162/316 (51.27%), Postives = 205/316 (64.87%), Query Frame = 1
Query: 424 RRQFNTQ-RGFPPRRXXPQRVFAGAVFLFLAAWGLLFGAITLLLLPFIGLALYLLRRDFQRGGPSRGLAESVARRMAERADR---------GFPPGAVGGPMAHWMQRAPTEGLLSTVLSQTLGGGIRGMQLVGVLRSEVKNRARRHPGLTSALGGDIEAFSDVEMSTVGTAGGSFGRQSAPAGGSIAGGQGPSRVIKARLRFMGRRSGAGGAGWAEVEVSDWEGQNDKDDTEGLEFDRIVVTLDNGKTFDLSNLDGEHHGRGNGSGDTINSTFTSRG----PTGNWKQTGGKDRQADRRRPKDKRRPVEAEFRDK 1329
RRQ +T RG R P+R+FAG V + LAAWGL+FGAITLLLLPF+G+ L+LLRR+FQRGG SR L +A++MAER P GG MQR+PTEG LS++ ++ LGGGIRGMQLVGVLRSEV+ RA RHPGL+SALGG IE FSD+E+STV + GG+ S GG GG+ PSRV+KA+LRF GRR+GAG WAEVEV++W G+ +++ +EFDRI VTLDNG+TFDL++ R + S T +G P G+ K+ G+ +PVEAEFRDK
Sbjct: 17 RRQLSTAGRG---GRRLPERIFAGLVVVVLAAWGLVFGAITLLLLPFVGIGLFLLRRNFQRGGMSRNLVARLAQKMAERGGSHGXXXXXXXXXXPMMGGGGGTPRMQRSPTEGALSSLFARMLGGGIRGMQLVGVLRSEVEKRALRHPGLSSALGGGIENFSDIEISTVASVGGNSWN-SGGGGGDRRGGE-PSRVVKAKLRFSGRRAGAG---WAEVEVTEWAGREEEE----MEFDRIFVTLDNGRTFDLTSDSFSGDDRVGEGASGVRSRRTVKGRSTSPQGSKKKARGEAGGG---------QPVEAEFRDK 311
BLAST of mRNA_A-nodosum_M_contig1115.6.1 vs. uniprot
Match: A0A6H5L7D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D3_9PHAE) HSP 1 Score: 246 bits (628), Expect = 1.330e-69 Identity = 167/336 (49.70%), Postives = 205/336 (61.01%), Query Frame = 1
Query: 424 RRQFNTQ-RGFPPRRXXPQRVFAGAVFLFLAAWGLLFGAITLLLLPFIGLALYLLRRDFQRGGPSRGLAESVARRMAERADRGFPPGAVGG-----------------------------PMAHWMQRAPTEGLLSTVLSQTLGGGIRGMQLVGVLRSEVKNRARRHPGLTSALGGDIEAFSDVEMSTVGTAGGSFGRQSAPAGGSIAGGQGPSRVIKARLRFMGRRSGAGGAGWAEVEVSDWEGQNDKDDTEGLEFDRIVVTLDNGKTFDLSN--LDGEHHGRGNGSGDTINSTFTSRG--PTGNWKQTGGKDRQADRRRPKDKRRPVEAEFRDK 1329
RRQ +T RG P P+RVFAG V + LAAWGL+FGAITLLLLPF+G+ L+LLRR+FQRGG SR LA +A++MAE RG P G GG A WMQRAPTEG +S++ ++ LGGG+RGMQLVGVLRSEV+ RA RHPGL+SALGG IE FSD+E+STV + GGS AG GG PSRV A+LRF GRR+GAG WAEVEV++W G+ + EG+EFDRI VTLDNG+TFDL++ G+ SG T + R P G+ G+ +P+EAEFRDK
Sbjct: 122 RRQLSTSGRGGRP---LPERVFAGLVVVVLAAWGLVFGAITLLLLPFVGIGLFLLRRNFQRGGMSRNLAARLAQKMAE---RGGPHGGGGGLXXXXXXXXXXXXXXXGGXXXXXXXXXXXXXAPWMQRAPTEGAVSSLFARMLGGGLRGMQLVGVLRSEVEKRALRHPGLSSALGGGIENFSDIEISTVDSVGGSSWNSGGGAGDRQGGG--PSRVTNAKLRFSGRRAGAG---WAEVEVTEWGGREE----EGIEFDRIFVTLDNGRTFDLTSDSFSGDDRVGEGASGVRSRRTVSGRSTSPQGSKNNARGEAGGG---------QPIEAEFRDK 433
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2557 |
| Hectar predicted targeting category | mitochondrion |
| Exons | 4 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-08_003630.1 |
| Cds size | 1281 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680866510.9382088-UTR-A-nodosum_M_contig1115:99653..99704 | 1680866510.9382088-UTR-A-nodosum_M_contig1115:99653..99704 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig1115 99654..99704 + |
| 1680866510.9902048-UTR-A-nodosum_M_contig1115:103600..104825 | 1680866510.9902048-UTR-A-nodosum_M_contig1115:103600..104825 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig1115 103601..104825 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680866510.9496772-CDS-A-nodosum_M_contig1115:99704..100188 | 1680866510.9496772-CDS-A-nodosum_M_contig1115:99704..100188 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1115 99705..100188 + |
| 1680866510.9610105-CDS-A-nodosum_M_contig1115:101872..102143 | 1680866510.9610105-CDS-A-nodosum_M_contig1115:101872..102143 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1115 101873..102143 + |
| 1680866510.9716256-CDS-A-nodosum_M_contig1115:102683..102994 | 1680866510.9716256-CDS-A-nodosum_M_contig1115:102683..102994 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1115 102684..102994 + |
| 1680866510.9799042-CDS-A-nodosum_M_contig1115:103385..103600 | 1680866510.9799042-CDS-A-nodosum_M_contig1115:103385..103600 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1115 103386..103600 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1115.6.1 >prot_A-nodosum_M_contig1115.6.1 ID=prot_A-nodosum_M_contig1115.6.1|Name=mRNA_A-nodosum_M_contig1115.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=427bp
MWRCTCHARSHRGASVISRRIDRFANTRSLLSSSRFEQRKTIFLRARSAR EFERRHRSALQTANFCNSGSSSGSGIVNTRVTAEQVNVLRPRVHSLKGSN GVAHNLASVRAPPLLGSSFGQEFQRRQFNTQRGFPPRRGFPQRVFAGAVF LFLAAWGLLFGAITLLLLPFIGLALYLLRRDFQRGGPSRGLAESVARRMA ERADRGFPPGAVGGPMAHWMQRAPTEGLLSTVLSQTLGGGIRGMQLVGVL RSEVKNRARRHPGLTSALGGDIEAFSDVEMSTVGTAGGSFGRQSAPAGGS IAGGQGPSRVIKARLRFMGRRSGAGGAGWAEVEVSDWEGQNDKDDTEGLE FDRIVVTLDNGKTFDLSNLDGEHHGRGNGSGDTINSTFTSRGPTGNWKQT GGKDRQADRRRPKDKRRPVEAEFRDK* back to topmRNA from alignment at A-nodosum_M_contig1115:99654..104825+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig1115.6.1 ID=mRNA_A-nodosum_M_contig1115.6.1|Name=mRNA_A-nodosum_M_contig1115.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5172bp|location=Sequence derived from alignment at A-nodosum_M_contig1115:99654..104825+ (Ascophyllum nodosum dioecious) GCGTCGATAGGTCACGTTTCTCCACTTATACCAACGGTAGCTTAAAGGAA
AATGTGGCGCTGTACCTGTCACGCTCGGTCACATCGAGGTGCTTCAGTCA
TCTCCAGAAGAATCGACAGATTTGCGAACACTCGATCTCTTCTCTCCTCC
TCGCGGTTCGAACAGCGCAAGACCATCTTTCTGAGGGCACGAAGCGCTCG
CGAATTCGAACGGCGACATCGCTCCGCCCTACAAACAGCGAACTTTTGCA
ACAGCGGCAGCAGCAGCGGTAGTGGCATTGTCAACACTCGCGTAACAGCT
GAACAAGTCAACGTCTTACGACCCAGGGTTCATTCGTTGAAGGGCTCCAA
TGGTGTCGCGCACAACCTTGCTAGTGTCAGGGCCCCGCCACTTCTGGGGT
CGTCGTTCGGGCAAGAGTTTCAGAGGCGGCAGTTTAACACCCAGCGTGGC
TTCCCACCACGTCGAGGCTTTCCCCAAAGGGTTTTTGCTGGCGCGGTTTT
TTTGTTCCTCGCCGCGTGGGGCCTTCTCTTCGGAGGTGCGTCCTTTTCCC
TTTCTTTTACATGGGTACACAATTTAAAATACCTCGTACGAAAAAGTACA
GGCTATCACTTCTCATCTTTTCCTCGATTATTACAACATAGACTACAAGT
AGACCTTACAGTAATATAAATAATATACTAGTACCTACAGAAAGCGGTCA
CAACTTATAGTACACCGTAGAGTCACCGGAGTATTTTGGACGTGGGTTAC
TCGTATACTGGGTTACAGTAAAAACGTTTCTATCGGATGCCTGAGCTGGC
CTTGACGCACACACAACATTGCTCATGTCTCTCTCGCATCGTACAAGTGT
TGATACGGTCGTGCCTCCAGCACGTGCACTACCTACTTCATCCCTTTTGT
GCCCCAGATATATTAATATCTTGCCTTGGCGTCTTCGTCCTCGAACACTT
TACATGAGTAATACCGACGACAAGCGCGGAGCAGCTTCGACGCTCAGACG
GCCTGCAGTGTTTTCCGGTAACTCTGACTGGACAGTTTGTGAGGTTGTAC
TTTAAAGAAAAATCTGAACGCATCTAGAACTTCTGAGCATCCCACAAAAA
AAATGTCAAAACGCTTAGTAGGTGGGATCAAGGCTGCCAAGACAAAACAT
CTTCATGTCATTTAAACGGGTTCCCCGATGGTAGTAACATTGCGTCAGCT
GTATAATCCCGGGGAGAAGCGCACCGTTGTTATGCTGTACACTTACATTA
TTAAAACGCCATGCAGGGACACCATTCTAGCGCGAGATCCAGGTGGTGGG
GTAAATAAGAGAATACCCCACCAGTGTGGTAAGTAGCCATTTCAAAAAAA
CTTTTAACAAAAATATTGTGCAGACAGTAGTACATACCACAACTATAACC
AACCAAAACAATGTACGAAGTAGTACATAATAGATAGGATAGTAATAATA
GGCCCGTAATAATATACCAGTACGATAATAGTGCCATCGCACCAAACAGC
AATAGGGGCTTTTAGTCTAAAATAGAACACAAGGAACGTTGCGATATTAT
AACTGATGAGGAGTGGTACATTTTGATTAAGGTATAGAACGCCTAGTGGT
AGTGGTGAATACATAAGATTTTGAAACTGGGGCAGAGAGGACCGCCATCG
TAGATATCTTGGACATAATCCAGCAAGTACGAGACACCGATATTCACCTC
GTGTCTCATTGTAACAAGTCCAGGTCAAGCAAATCCATAGGTCTACATAG
AGCCAGAACCTATCGCAATAATGACAGCACATAAGTGTGTGTGTGTTTTC
TTCCCATTTATTCTGGACTTCAATGGACGTACCAGCCGGGGTCACACAGG
AAGAAGGTAACACAGGATTTTCCATCCACCTTCTTTCTGCGGTGCTTGCC
TTAATTTTTCTCGCGAGAAGGATTCAGCCATTCCTTTCCCTCGTCGACCG
TGAAGTCGAATTTTGTGTACTAACGATTTAATCGTTCTCCACCCGTTGGC
ATTTTTATTTTCATTTTTTAGTTTTTCAGTGAGAAAAATCCCGTTTGCCG
GGATCAAACTCACGTCCCAACGTGTCAGAGATTAAATGGTACCTCTGAGC
TATCGGGGCGACCCGCGTTTCCACATCATGTACTCGAGAAGGTTTTTCCG
ACCCGCGTTTCAAACCCTAAATACAGTACAATACTGACTGTGTCGTTACA
ACGTGCGCCACCCACGCAGCGATTACGCTGCTCCTTTTGCCTTTCATCGG
GTTGGCGTTGTACCTACTGAGGCGCGACTTCCAGCGAGGAGGACCTTCCA
GAGGTCTCGCGGAGAGCGTGGCTCGTAGGATGGCAGAGCGGGCGGATCGG
GGTTTCCCCCCGGGTGCCGTTGGTGGCCCCATGGCCCACTGGATGCAGAG
GGCGCCAACCGAGGGCCTGCTGTCCACCGTGCTGTCGCAGACGCTCGGGG
GTGGGATCCGAGGCATGCAGCTCGTGGGCGTCTTGCGTAGGTGTGATTTA
GGGTAGAGCCACCACAAAAGGGGATGCCTGGCCGCCGCAGGGCTTTTTGA
CCTACCGTAAGTTACACTATACCTGGTAATAGTCCAATTATATGTTGATC
CATACACTTGGGAAGAGGAGGCTTGTTTGAAGTGGTTAGGGAGCAATCGT
TACAACTGTAGTACACTATTTTTTCCCCAAGTGGACATTTGCCGTCTACT
GTACCCGCCTGTTGTGAACACGTTGCGGCATCCAATGTGCGTGGTATGCG
ACGTACTCTACTTACAAGCTTGTATCAGGCAGTCTTTGTGAAAAAGTTTA
AAGTACCAGGGGTATGTTTTCTTTCATATGTATTTTTCCTCTAAAGGAGA
AAAGTAGGAAACTTGCTTATTTATATTTGACTAGACCGGCCAAACCACTC
ACCACTCGTTCGTTAAAATCGTATTGATAAGTTGTACTGTAAAAAGGTTA
CTGTATACTGTATACTGTATCTTCATCACCCACCACGTGCCGCCGCCTCT
ATGCTCGACCCCCGCCTCCACACACTCCAGCGAGGTCAAAAACCGTGCGC
GCCGGCATCCTGGCCTCACGAGCGCTCTCGGCGGAGATATCGAGGCGTTT
TCGGACGTGGAAATGTCCACCGTGGGAACGGCCGGCGGCAGCTTTGGACG
GCAGAGCGCCCCGGCAGGCGGCAGCATCGCCGGGGGGCAGGGGCCTTCGA
GGGTGATCAAGGCAAGACTGAGGTTTATGGGGCGGCGCTCGGGGGCGGGA
GGCGCTGGGTGGGCGGAGGTGGAGGTGAGCGACTGGGAGGGGCAGAATGA
CAAGGACGACACGGAGGGGCTGGAGTTCGATCGGATCGTAGGTGAGAGCA
ATCAAAGCACGCGTTTGTGTTTTCCTGTATTCGTGTGTGCTTTGTCTAAT
GTGAACGTGGTGGGTGGTTGTGTGTGTGTGTGTGTGTGAACTATTCTGTA
CCAGTATCAGGTTAAAAATTCAGTACTGTATACCAGGAACGTTTCGTGTT
TTTCTTTCCGGACACTTTCTCCGTTCACATATGCTTGTATCTACAAGATA
AATTCCAGATAAATTCAACCTTCTCAATACAGGGTACCAGTTGTTGTTAC
TGATCCTCCCGCCTTTGCTGCTAACGCTAAACGTAACCCTAACCCTATCC
TTGCCGTACGCATTATCGTAAACCGACTGCTGTTCATGTTCCTGTTTCCC
TCCGCCGGCCTATATTAATACTGGTACAATAGTCACGCTGGACAACGGGA
AAACGTTCGACCTCAGCAATCTGGATGGAGAGCACCACGGCCGTGGGAAC
GGAAGCGGGGATACTATTAATAGCACCTTTACTAGCCGAGGGCCCACCGG
TAATTGGAAACAGACCGGTGGAAAGGATAGACAGGCGGACAGAAGACGGC
CGAAGGACAAGAGACGTCCGGTGGAGGCCGAGTTCCGCGACAAGTAGAAG
TTTTTTGCTCAATTTGCGATTGGCGGTTACTGATCGGAAAAATGGGGGGG
TGGGGCAAAATGAGGGCTTGTGGGGCAAAGTGAGGGCTTCGTAGAGATTT
GTCTCGTGCCCCTGTGTTGAGGCCTAGAGGGTCTTCTTTGCCTAGTTTGA
CGATGATTGCAGAGCAGAGACATTTTTGTATAAGAGGAAGAGGAAGTGTA
AGAACAGTGTGCGTTTGGCGGGTTAGGGGGGGGAGGTTGATTGTCCCTTG
ATCAGGTAAAAAGTGCTTGACGCTTTTTTTTTTCTTTTTTTTCTGGGCAT
TTTTTTTGCTTTTGTTTCAAATGTTGGAATTTTTTGCCTTGTTTTCCCTG
TTTTTTGCAGCGCGCCGCTGAGTTCTATTCATATAATAAAATAGTGCGTA
TACCCCAAGTGTGTAGGGTGGGTTCGCATCCGAGCTTTGGCAGAAGACAG
ATTGCTGCTACGTTTCGATCTTGCAGCGTCGTGCGCGGTGTTCCATCATG
CACAGTAAAATTACAGTCAGGCAAGTACACTATTTATCGATGTACGTACT
ATTATAGAGACTACTTGTAGTAATATTTAGTATCTTTACGACCCTTCGGA
CGGCTTCGTCACCTGAAGCACACTCACGAAAGCACGGATCCTCCCCCAAA
CATGAAACTTTTTTGTGTCGAATGGTTAACCATCGTGCTGCCCCGGGCAT
GCTCACACACGAGGTGAGCCTTGTCGTTCCGTAGGCAGGCCAAAGTCCAG
ATCAGGTGGACGAGACAGCTGCGTTTCGCGAACTTGAAGTCTTGCACTGT
TGTGTACGTGTTTGTTTGTTTTGTGTAGCTGTGTGTGAGAGAGAGTTGTG
TGTGTGTAAATATTTCGCCGCTCAACAATCGAGTCGGATCAACGTTTGGG
TATGCCTTGGCGTGTCACCTCAAGAGCGGAGATGGAGGGTAACAGTCCGG
AGCATGGCACTGCGCAGCGTCCTGAGGCCGGGGCGTCATCCGAGCACGAA
ACAGGTGAGAGACACCATGTGTGTGTTTGTGTGTCCCCCCTTGGTGATAA
TAAGGGGAATCCTGCTTTTGCTATATAATGGGGACAGGGTTTGAGCATAG
TAGATGTGAACTACGTAACTCTCCAGGAGGCCCACTTGGCCTCAAAGGAG
ATCTTTCCATCCAAAAGTTACTGTTTTTTTTTTGTTTTGTTTTTTTCTTG
CAACGTGACGCGGCAGAGCGCG back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig1115:99654..104825+ >mRNA_A-nodosum_M_contig1115.6.1 ID=mRNA_A-nodosum_M_contig1115.6.1|Name=mRNA_A-nodosum_M_contig1115.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1281bp|location=Sequence derived from alignment at A-nodosum_M_contig1115:99654..104825+ (Ascophyllum nodosum dioecious) ATGTGGCGCTGTACCTGTCACGCTCGGTCACATCGAGGTGCTTCAGTCAT CTCCAGAAGAATCGACAGATTTGCGAACACTCGATCTCTTCTCTCCTCCT CGCGGTTCGAACAGCGCAAGACCATCTTTCTGAGGGCACGAAGCGCTCGC GAATTCGAACGGCGACATCGCTCCGCCCTACAAACAGCGAACTTTTGCAA CAGCGGCAGCAGCAGCGGTAGTGGCATTGTCAACACTCGCGTAACAGCTG AACAAGTCAACGTCTTACGACCCAGGGTTCATTCGTTGAAGGGCTCCAAT GGTGTCGCGCACAACCTTGCTAGTGTCAGGGCCCCGCCACTTCTGGGGTC GTCGTTCGGGCAAGAGTTTCAGAGGCGGCAGTTTAACACCCAGCGTGGCT TCCCACCACGTCGAGGCTTTCCCCAAAGGGTTTTTGCTGGCGCGGTTTTT TTGTTCCTCGCCGCGTGGGGCCTTCTCTTCGGAGCGATTACGCTGCTCCT TTTGCCTTTCATCGGGTTGGCGTTGTACCTACTGAGGCGCGACTTCCAGC GAGGAGGACCTTCCAGAGGTCTCGCGGAGAGCGTGGCTCGTAGGATGGCA GAGCGGGCGGATCGGGGTTTCCCCCCGGGTGCCGTTGGTGGCCCCATGGC CCACTGGATGCAGAGGGCGCCAACCGAGGGCCTGCTGTCCACCGTGCTGT CGCAGACGCTCGGGGGTGGGATCCGAGGCATGCAGCTCGTGGGCGTCTTG CGTAGCGAGGTCAAAAACCGTGCGCGCCGGCATCCTGGCCTCACGAGCGC TCTCGGCGGAGATATCGAGGCGTTTTCGGACGTGGAAATGTCCACCGTGG GAACGGCCGGCGGCAGCTTTGGACGGCAGAGCGCCCCGGCAGGCGGCAGC ATCGCCGGGGGGCAGGGGCCTTCGAGGGTGATCAAGGCAAGACTGAGGTT TATGGGGCGGCGCTCGGGGGCGGGAGGCGCTGGGTGGGCGGAGGTGGAGG TGAGCGACTGGGAGGGGCAGAATGACAAGGACGACACGGAGGGGCTGGAG TTCGATCGGATCGTAGTCACGCTGGACAACGGGAAAACGTTCGACCTCAG CAATCTGGATGGAGAGCACCACGGCCGTGGGAACGGAAGCGGGGATACTA TTAATAGCACCTTTACTAGCCGAGGGCCCACCGGTAATTGGAAACAGACC GGTGGAAAGGATAGACAGGCGGACAGAAGACGGCCGAAGGACAAGAGACG TCCGGTGGAGGCCGAGTTCCGCGACAAGTAG back to top
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