mRNA_A-nodosum_M_contig1114.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1114.3.1
Unique NamemRNA_A-nodosum_M_contig1114.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: D8LQS3_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQS3_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.810e-13
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    1 GGPSGVRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVIKPEEIAKLVLFLAS 171
            G  SGVRVNS++PGHVETPI+G +  + L  +T  +Q+I R IKPEEIA +V+FLAS
Sbjct:  179 GAASGVRVNSVSPGHVETPIYGEMPRETLVAVTGTTQLIARPIKPEEIANVVIFLAS 235          
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.380e-11
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    1 GGPSGVRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVIKPEEIAKLVLFLAS 171
            G  SGVRVNS+APG VETPI+G +  D L      +Q++PR   PEEIAK+V+FLAS
Sbjct:  181 GAASGVRVNSVAPGLVETPIFGDMPVDTLVAFAGATQLVPRPCAPEEIAKVVIFLAS 237          
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: A0A517VPP7_9PLAN (Glucose 1-dehydrogenase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VPP7_9PLAN)

HSP 1 Score: 60.1 bits (144), Expect = 2.510e-9
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    4 GPSGVRVNSIAPGHVETPIWGSI--THDQLAELTKK--SQVIPRVI-KPEEIAKLVLFLAS 171
            GP G+RVNSIAPG VETP+W S+    DQL  + K   S++IP+   KPEEIA++ +FLAS
Sbjct:  170 GPRGIRVNSIAPGPVETPLWKSVGLDADQLQTVAKSINSRLIPQAFGKPEEIAEVAVFLAS 230          
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: D7FY92_ECTSI (Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY92_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.200e-8
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 GGPSGVRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVIKPEE--IAKLVLFLAS 171
            G  SGVRVNS APG VETPI+G +  D L      +Q++PR    E+  IAK+VLFLAS
Sbjct:   43 GAASGVRVNSFAPGLVETPIFGGMPLDTLVAFAGATQLVPRRCASEQTQIAKVVLFLAS 101          
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: A0A6M0K0R2_9GAMM (SDR family oxidoreductase n=1 Tax=Thiorhodococcus minor TaxID=57489 RepID=A0A6M0K0R2_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 3.550e-8
Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    4 GPSGVRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPR-VIKPEEIAKLVLFLAS 171
            GP G+RVN +APG V++ +WG  T D + E+T K  V+ + V+KP ++A+ VLFLAS
Sbjct:  180 GPKGIRVNGVAPGVVDSEMWGGAT-DLMREITAKRHVLSQAVVKPADVAEAVLFLAS 235          
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: UPI0018817B8A (SDR family oxidoreductase n=1 Tax=Leptolyngbya ectocarpi TaxID=1202 RepID=UPI0018817B8A)

HSP 1 Score: 55.1 bits (131), Expect = 6.770e-8
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   16 VRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVI-----KPEEIAKLVLFLAS 171
            +RVN++APG +ETPIW  +   Q A      QVI RV      KPEEIAK VLFLAS
Sbjct:   84 IRVNAVAPGPIETPIWSKMNLPQEAMEQAAQQVISRVPVGRFGKPEEIAKAVLFLAS 140          
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: UPI000F772EA3 (glucose 1-dehydrogenase n=1 Tax=Levilactobacillus cerevisiae TaxID=1704076 RepID=UPI000F772EA3)

HSP 1 Score: 55.5 bits (132), Expect = 1.220e-7
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    7 PSGVRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVIKPEEIAKLVLFLAS 171
            PSGVRVNS+ PG +ETP+       ++ +   K+  + R+ KPEE+AKLVLF+AS
Sbjct:  170 PSGVRVNSVHPGVIETPMISQAGSAEIVKQFAKAIPLRRIAKPEEVAKLVLFVAS 224          
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: A0A2E5YEC4_9DELT (3-alpha-hydroxysteroid dehydrogenase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E5YEC4_9DELT)

HSP 1 Score: 55.5 bits (132), Expect = 1.310e-7
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    4 GPSGVRVNSIAPGHVETPIWGSITHDQLAELTKKS----QVIPRVIKPEEIAKLVLFLAS 171
            G  G+RVNS+ PG V+TP+ G    D+L  + ++     Q IPR+ +PEEIA+LVLFLAS
Sbjct:  171 GQHGIRVNSVHPGGVDTPMLGG---DELGHMAEQDPFAVQPIPRIAQPEEIARLVLFLAS 227          
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: A0A7C9TUE5_9CYAN (SDR family oxidoreductase n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9TUE5_9CYAN)

HSP 1 Score: 55.1 bits (131), Expect = 1.740e-7
Identity = 32/57 (56.14%), Postives = 35/57 (61.40%), Query Frame = 1
Query:   16 VRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVI-----KPEEIAKLVLFLAS 171
            +RVN+IAPG +ETPIW  I   Q A      QVI R       KPEEIAK VLFLAS
Sbjct:  173 IRVNAIAPGAIETPIWSKIEMPQEAMEQAAQQVIARTPAGRFGKPEEIAKAVLFLAS 229          
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: A0A3D4SZI1_9CORY (3-oxoacyl-ACP reductase n=1 Tax=Corynebacterium nuruki TaxID=1032851 RepID=A0A3D4SZI1_9CORY)

HSP 1 Score: 54.7 bits (130), Expect = 2.430e-7
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    4 GPSGVRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVIKPEEIAKLVLFLAS 171
            GP+G+RVNS+ PG+++TP+   +  +Q A L  K   + R+ +PEEIAKLV FL S
Sbjct:  176 GPAGLRVNSVGPGYIDTPLLAGLPDEQKAALVDKHP-LGRLGRPEEIAKLVAFLLS 230          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQS3_ECTSI1.810e-1359.65Short-chain dehydrogenase/reductase SDR n=2 Tax=Ec... [more]
D8LQS1_ECTSI1.380e-1157.89Short-chain dehydrogenase/reductase SDR n=1 Tax=Ec... [more]
A0A517VPP7_9PLAN2.510e-955.74Glucose 1-dehydrogenase n=2 Tax=Gimesia aquarii Ta... [more]
D7FY92_ECTSI1.200e-854.24Oxidoreductase, short chain dehydrogenase/reductas... [more]
A0A6M0K0R2_9GAMM3.550e-849.12SDR family oxidoreductase n=1 Tax=Thiorhodococcus ... [more]
UPI0018817B8A6.770e-854.39SDR family oxidoreductase n=1 Tax=Leptolyngbya ect... [more]
UPI000F772EA31.220e-749.09glucose 1-dehydrogenase n=1 Tax=Levilactobacillus ... [more]
A0A2E5YEC4_9DELT1.310e-750.003-alpha-hydroxysteroid dehydrogenase n=1 Tax=Delta... [more]
A0A7C9TUE5_9CYAN1.740e-756.14SDR family oxidoreductase n=1 Tax=Oscillatoria sp.... [more]
A0A3D4SZI1_9CORY2.430e-748.213-oxoacyl-ACP reductase n=1 Tax=Corynebacterium nu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1114contigA-nodosum_M_contig1114:7444..8038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQS3
PFAMsadh_short_C2
Model size174
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue2.96e-14
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota
Descriptionoxidation-reduction process
Cds size171
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866509.7344887-CDS-A-nodosum_M_contig1114:7443..75841680866509.7344887-CDS-A-nodosum_M_contig1114:7443..7584Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1114 7444..7584 +
1680866509.7481222-CDS-A-nodosum_M_contig1114:8007..80371680866509.7481222-CDS-A-nodosum_M_contig1114:8007..8037Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1114 8008..8037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1114.3.1prot_A-nodosum_M_contig1114.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1114 7444..8037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1114.3.1

>prot_A-nodosum_M_contig1114.3.1 ID=prot_A-nodosum_M_contig1114.3.1|Name=mRNA_A-nodosum_M_contig1114.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp
GGPSGVRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVIKPEEIAK
LVLFLAS
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mRNA from alignment at A-nodosum_M_contig1114:7444..8038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1114.3.1 ID=mRNA_A-nodosum_M_contig1114.3.1|Name=mRNA_A-nodosum_M_contig1114.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=595bp|location=Sequence derived from alignment at A-nodosum_M_contig1114:7444..8038+ (Ascophyllum nodosum dioecious)
GGAGGGCCCTCTGGGGTACGTGTCAACTCGATTGCTCCGGGACACGTAGA GACGCCCATCTGGGGTTCCATAACCCACGACCAGCTTGCTGAGCTCACCA AGAAAAGCCAGGTCATCCCACGCGTCATCAAACCCGAAGAGGTACTGAAC TACTGTATGTGATTGCAAAATATCCTCGGCTAACAATATGGAAAAGAGAG GGCTGTCTATCAAACGTTCCATTTTTTTGTGGTACGAGTATTCACGGGAT TTTAGAGAAGAGAGCCAGAGCTTTATACCTGGTATGATTGTTTGGGGCAA GGCAATAGGAGATCGGAAGCCTAATACATATCAGGCACAGACATACTACT TTATACCAAAGGTAGAACTATTCTCTGGGACACTCTTTCGATGCATGAAA TGCTCGATAATTGGCGGTCTCTGCAGCAGTGCACGTCCCTGTCCCTCCCC TCGTCTGGACGGTTACTTCATCTTCAAATCATAATATATTATGTCATCCC TCTTCAAAATTCTCGGTCGTCGTTGCGTTCGCGCTGTGTGTGCATGACAC GCTTGACGGGTCAGATCGCTAAGCTCGTGCTATTCCTGGCGTCCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1114:7444..8038+

>mRNA_A-nodosum_M_contig1114.3.1 ID=mRNA_A-nodosum_M_contig1114.3.1|Name=mRNA_A-nodosum_M_contig1114.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig1114:7444..8038+ (Ascophyllum nodosum dioecious)
GGAGGGCCCTCTGGGGTACGTGTCAACTCGATTGCTCCGGGACACGTAGA
GACGCCCATCTGGGGTTCCATAACCCACGACCAGCTTGCTGAGCTCACCA
AGAAAAGCCAGGTCATCCCACGCGTCATCAAACCCGAAGAGATCGCTAAG
CTCGTGCTATTCCTGGCGTCC
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