mRNA_A-nodosum_M_contig1114.3.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: D8LQS3_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQS3_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 1.810e-13 Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query: 1 GGPSGVRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVIKPEEIAKLVLFLAS 171
G SGVRVNS++PGHVETPI+G + + L +T +Q+I R IKPEEIA +V+FLAS
Sbjct: 179 GAASGVRVNSVSPGHVETPIYGEMPRETLVAVTGTTQLIARPIKPEEIANVVIFLAS 235
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI) HSP 1 Score: 66.2 bits (160), Expect = 1.380e-11 Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 1 GGPSGVRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVIKPEEIAKLVLFLAS 171
G SGVRVNS+APG VETPI+G + D L +Q++PR PEEIAK+V+FLAS
Sbjct: 181 GAASGVRVNSVAPGLVETPIFGDMPVDTLVAFAGATQLVPRPCAPEEIAKVVIFLAS 237
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: A0A517VPP7_9PLAN (Glucose 1-dehydrogenase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VPP7_9PLAN) HSP 1 Score: 60.1 bits (144), Expect = 2.510e-9 Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1
Query: 4 GPSGVRVNSIAPGHVETPIWGSI--THDQLAELTKK--SQVIPRVI-KPEEIAKLVLFLAS 171
GP G+RVNSIAPG VETP+W S+ DQL + K S++IP+ KPEEIA++ +FLAS
Sbjct: 170 GPRGIRVNSIAPGPVETPLWKSVGLDADQLQTVAKSINSRLIPQAFGKPEEIAEVAVFLAS 230
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: D7FY92_ECTSI (Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY92_ECTSI) HSP 1 Score: 56.2 bits (134), Expect = 1.200e-8 Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 1 GGPSGVRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVIKPEE--IAKLVLFLAS 171
G SGVRVNS APG VETPI+G + D L +Q++PR E+ IAK+VLFLAS
Sbjct: 43 GAASGVRVNSFAPGLVETPIFGGMPLDTLVAFAGATQLVPRRCASEQTQIAKVVLFLAS 101
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: A0A6M0K0R2_9GAMM (SDR family oxidoreductase n=1 Tax=Thiorhodococcus minor TaxID=57489 RepID=A0A6M0K0R2_9GAMM) HSP 1 Score: 57.0 bits (136), Expect = 3.550e-8 Identity = 28/57 (49.12%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 4 GPSGVRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPR-VIKPEEIAKLVLFLAS 171
GP G+RVN +APG V++ +WG T D + E+T K V+ + V+KP ++A+ VLFLAS
Sbjct: 180 GPKGIRVNGVAPGVVDSEMWGGAT-DLMREITAKRHVLSQAVVKPADVAEAVLFLAS 235
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: UPI0018817B8A (SDR family oxidoreductase n=1 Tax=Leptolyngbya ectocarpi TaxID=1202 RepID=UPI0018817B8A) HSP 1 Score: 55.1 bits (131), Expect = 6.770e-8 Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 1
Query: 16 VRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVI-----KPEEIAKLVLFLAS 171
+RVN++APG +ETPIW + Q A QVI RV KPEEIAK VLFLAS
Sbjct: 84 IRVNAVAPGPIETPIWSKMNLPQEAMEQAAQQVISRVPVGRFGKPEEIAKAVLFLAS 140
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: UPI000F772EA3 (glucose 1-dehydrogenase n=1 Tax=Levilactobacillus cerevisiae TaxID=1704076 RepID=UPI000F772EA3) HSP 1 Score: 55.5 bits (132), Expect = 1.220e-7 Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 7 PSGVRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVIKPEEIAKLVLFLAS 171
PSGVRVNS+ PG +ETP+ ++ + K+ + R+ KPEE+AKLVLF+AS
Sbjct: 170 PSGVRVNSVHPGVIETPMISQAGSAEIVKQFAKAIPLRRIAKPEEVAKLVLFVAS 224
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: A0A2E5YEC4_9DELT (3-alpha-hydroxysteroid dehydrogenase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E5YEC4_9DELT) HSP 1 Score: 55.5 bits (132), Expect = 1.310e-7 Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 4 GPSGVRVNSIAPGHVETPIWGSITHDQLAELTKKS----QVIPRVIKPEEIAKLVLFLAS 171
G G+RVNS+ PG V+TP+ G D+L + ++ Q IPR+ +PEEIA+LVLFLAS
Sbjct: 171 GQHGIRVNSVHPGGVDTPMLGG---DELGHMAEQDPFAVQPIPRIAQPEEIARLVLFLAS 227
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: A0A7C9TUE5_9CYAN (SDR family oxidoreductase n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9TUE5_9CYAN) HSP 1 Score: 55.1 bits (131), Expect = 1.740e-7 Identity = 32/57 (56.14%), Postives = 35/57 (61.40%), Query Frame = 1
Query: 16 VRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVI-----KPEEIAKLVLFLAS 171
+RVN+IAPG +ETPIW I Q A QVI R KPEEIAK VLFLAS
Sbjct: 173 IRVNAIAPGAIETPIWSKIEMPQEAMEQAAQQVIARTPAGRFGKPEEIAKAVLFLAS 229
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Match: A0A3D4SZI1_9CORY (3-oxoacyl-ACP reductase n=1 Tax=Corynebacterium nuruki TaxID=1032851 RepID=A0A3D4SZI1_9CORY) HSP 1 Score: 54.7 bits (130), Expect = 2.430e-7 Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 1
Query: 4 GPSGVRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVIKPEEIAKLVLFLAS 171
GP+G+RVNS+ PG+++TP+ + +Q A L K + R+ +PEEIAKLV FL S
Sbjct: 176 GPAGLRVNSVGPGYIDTPLLAGLPDEQKAALVDKHP-LGRLGRPEEIAKLVAFLLS 230 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1114.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1114.3.1 >prot_A-nodosum_M_contig1114.3.1 ID=prot_A-nodosum_M_contig1114.3.1|Name=mRNA_A-nodosum_M_contig1114.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp GGPSGVRVNSIAPGHVETPIWGSITHDQLAELTKKSQVIPRVIKPEEIAKback to top mRNA from alignment at A-nodosum_M_contig1114:7444..8038+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1114.3.1 ID=mRNA_A-nodosum_M_contig1114.3.1|Name=mRNA_A-nodosum_M_contig1114.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=595bp|location=Sequence derived from alignment at A-nodosum_M_contig1114:7444..8038+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1114:7444..8038+ >mRNA_A-nodosum_M_contig1114.3.1 ID=mRNA_A-nodosum_M_contig1114.3.1|Name=mRNA_A-nodosum_M_contig1114.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig1114:7444..8038+ (Ascophyllum nodosum dioecious)back to top |