mRNA_A-nodosum_M_contig1114.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1114.1.1
Unique NamemRNA_A-nodosum_M_contig1114.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: D8LQS5_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.720e-18
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 SLVFCFKYQIPAMAKS-GNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
            SL +CFKYQIPAM  S G KGSIIV++S  A R +ASP   G G+YAASKA A++LMKYAAIEG  SGVRV
Sbjct:   45 SLAWCFKYQIPAMKDSAGGKGSIIVNTSSTALRPSASPGMTGSGMYAASKAAAELLMKYAAIEGAASGVRV 115          
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: D8LQS3_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQS3_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.570e-17
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 SLVFCFKYQIPAMAKS-GNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
            SL +CFKYQIPAM  + G KGSIIV++S  A R TA P  AG G+Y+ASKA A+MLMKYAAIEG  SGVRV
Sbjct:  116 SLAWCFKYQIPAMKNTAGGKGSIIVNTSSTALRTTALPGMAGGGMYSASKAAAEMLMKYAAIEGAASGVRV 186          
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 4.100e-15
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 SLVFCFKYQIPAMAKS-GNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
            S+ +C KYQIPAM  + G KGSIIV++S+   R +A P   G G+Y+ASKA A+MLMKYAAIEG  SGVRV
Sbjct:  118 SIAWCLKYQIPAMKDTAGGKGSIIVNTSVTGLRPSALPGLTGAGMYSASKAAAEMLMKYAAIEGAASGVRV 188          
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: A0A835ZEC4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.680e-13
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    1 SLVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
            S+VF FKY +PA+ KSG  GSI+V+SS A S  +A    AG+  YAASKA  DML+KYAA+E  P   RV
Sbjct:  124 SVVFGFKYALPAIEKSGGHGSIVVNSSAAGSTASAKSVCAGIAPYAASKAAVDMLVKYAAVEAAPHNTRV 193          
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: A0A835YQ90_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ90_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.440e-12
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    4 LVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
            + +  KYQ+PA+ KSG KGS++++SS A S VTA P   G G YA++KA  D+LMKYAAIE    G RV
Sbjct:  117 VAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRV 185          
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: A0A836C9I6_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.170e-11
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    4 LVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
            + F  KYQ+PA+ KSG  GSI+++SS+A   V   P   G G ++ASKAGADMLM++AAIE    G RV
Sbjct:  113 VAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRV 181          
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: A0A835ZCI5_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.300e-11
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 SLVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
            S+ F  K+ +PA+ KSG  GS+I++SS  A R TA+P+ AG G+Y+ASKA ADM+MKYAAIE      RV
Sbjct:  119 SVAFGLKHVLPAIEKSGGGGSVIINSSGMALRATANPAFAGGGLYSASKAAADMVMKYAAIEASKHKTRV 188          
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: A0A835YKB8_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.540e-11
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    4 LVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
            + +  KYQ+PA+ KSG KGS++++SS   S VTA P   G G YA++KA  D+LMKYAAIE    G RV
Sbjct:  120 VAYALKYQLPAIEKSGGKGSVVINSSCLGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRV 188          
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: A0A836CAF4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.320e-10
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    1 SLVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
            S+    KYQ+PA+AKSG  G+I+++SSIA S V       G G YAA+KA ADMLM++AA+E    G ++
Sbjct:  117 SVALGLKYQLPAIAKSGGGGAIVINSSIAGSNVKTRKEFVGNGPYAATKAAADMLMRHAAVEASKQGTQI 186          
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: A0A835YRJ1_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.210e-10
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    4 LVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
            + +  KYQ+ A+ KSG KGS++++SS A   VTA P     G YA++KA AD+LMKYAAIE    G RV
Sbjct:  118 VAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRV 186          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LQS5_ECTSI3.720e-1867.61Short-chain dehydrogenase/reductase SDR n=1 Tax=Ec... [more]
D8LQS3_ECTSI2.570e-1767.61Short-chain dehydrogenase/reductase SDR n=2 Tax=Ec... [more]
D8LQS1_ECTSI4.100e-1560.56Short-chain dehydrogenase/reductase SDR n=1 Tax=Ec... [more]
A0A835ZEC4_9STRA6.680e-1355.71Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835YQ90_9STRA8.440e-1253.62Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A836C9I6_9STRA2.170e-1152.17Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835ZCI5_9STRA3.300e-1154.29Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835YKB8_9STRA4.540e-1152.17Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A836CAF4_9STRA4.320e-1048.57Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835YRJ1_9STRA6.210e-1050.72Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1114contigA-nodosum_M_contig1114:6311..7469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQS3
PFAMsadh_short_C2
Model size212
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.21e-18
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota
Descriptionoxidation-reduction process
Cds size210
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866509.672564-CDS-A-nodosum_M_contig1114:6310..63371680866509.672564-CDS-A-nodosum_M_contig1114:6310..6337Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1114 6311..6337 +
1680866509.684081-CDS-A-nodosum_M_contig1114:6804..69631680866509.684081-CDS-A-nodosum_M_contig1114:6804..6963Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1114 6805..6963 +
1680866509.6921256-CDS-A-nodosum_M_contig1114:7443..74671680866509.6921256-CDS-A-nodosum_M_contig1114:7443..7467Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1114 7444..7467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1114.1.1prot_A-nodosum_M_contig1114.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1114 6311..7467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1114.1.1

>prot_A-nodosum_M_contig1114.1.1 ID=prot_A-nodosum_M_contig1114.1.1|Name=mRNA_A-nodosum_M_contig1114.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=70bp
SLVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKA
GADMLMKYAAIEGGPSGVRV
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mRNA from alignment at A-nodosum_M_contig1114:6311..7469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1114.1.1 ID=mRNA_A-nodosum_M_contig1114.1.1|Name=mRNA_A-nodosum_M_contig1114.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1159bp|location=Sequence derived from alignment at A-nodosum_M_contig1114:6311..7469+ (Ascophyllum nodosum dioecious)
TCCCTCGTGTTCTGCTTCAAGTACCAGGTACGCATCCGTCGACGACGTAC CTGTTCGCCGAGCTGCACTCGTAAGTGATGTGGGGCAAGATGCAGAGAAA GGGTTCGTGACTGAAGAGAAATCCGGGTGTGGTTTGAGCCGCACCGGCAG CGCGAGCAAGGCGTTCCCAGGGGAAGGGTCCGTTTGTCAGTGCACTCCTC GCCTGTCGCCGTATGACCTGATGAAGTCAGCAGCGTGAAGAAATTAGCTT GATGTACGTGCACCCTTGAGCAGCTATCGCTCCGCGTTGATGTGACTGGA GGCAGGAGAGCGTGCGCGCGATGATTGCCCAGGAGGGGACGCCATTCACA CTACACCGCCCTACGAACATGCCTCCTGAACATGAATGGAAACCCTACTT TGTACTCTTGCCCCTCCTCGTTTGCACACTTAATCAAAACACGCTTCTCG CGCACTCCCGATCGGGGTCTTTGGTGGGGGGACGCCAACACAAGATCCCT GCCATGGCGAAGTCTGGAAACAAGGGATCCATTATCGTTGACAGCTCCAT CGCGGCGTCTCGTGTGACCGCGTCGCCTTCGGCCGCGGGCGTTGGTGTGT ACGCGGCCTCAAAAGCGGGTGCGGACATGCTAATGAAATACGCCGCCATT GAGGTGAGAGCCTGCTCCAGTTGGGCGGCGTTTTATGTCACCTTTCCCAC CCTCCCTTCCCCCGAGAGCAATCGGGAGTTGTTTAACAACGTGGGGAAGA GAAGCGCGGATCATGAGCCTCGTCCGTTCCATCGCGCCCCGTGTAATCGA CGCAGACGGGGGATTTGGGGGGGAGCGGGTGGCATTTGGAACAGCATTTT CTCTTAAACACAATTAATCCCTTCTCAGATGCCACGGATCGACCAGGATA ACGCAAGCTGATTGACAACTGGCGGGCCCTGTGGTGTCACACGGATAATG CGCATGAGCAAGGAAGAGGTTCCTGTTACCAGCCGTGAACGGATGAAATA TGTAGCCCCCGTGCCCGCATCCATGAATTGCTAACTCCGAGTTGTAGAAA GTTTGGGACAAACCCGATTCCGATCGGAAAATGGAGCTCCTCCTTCGTGC TATAAACTCCGTATTTTTGTCGTATTTTGGTAGGGAGGGCCCTCTGGGGT ACGTGTCAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1114:6311..7469+

>mRNA_A-nodosum_M_contig1114.1.1 ID=mRNA_A-nodosum_M_contig1114.1.1|Name=mRNA_A-nodosum_M_contig1114.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at A-nodosum_M_contig1114:6311..7469+ (Ascophyllum nodosum dioecious)
TCCCTCGTGTTCTGCTTCAAGTACCAGATCCCTGCCATGGCGAAGTCTGG
AAACAAGGGATCCATTATCGTTGACAGCTCCATCGCGGCGTCTCGTGTGA
CCGCGTCGCCTTCGGCCGCGGGCGTTGGTGTGTACGCGGCCTCAAAAGCG
GGTGCGGACATGCTAATGAAATACGCCGCCATTGAGGGAGGGCCCTCTGG
GGTACGTGTC
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