mRNA_A-nodosum_M_contig1114.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: D8LQS5_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS5_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 3.720e-18 Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 1
Query: 1 SLVFCFKYQIPAMAKS-GNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
SL +CFKYQIPAM S G KGSIIV++S A R +ASP G G+YAASKA A++LMKYAAIEG SGVRV
Sbjct: 45 SLAWCFKYQIPAMKDSAGGKGSIIVNTSSTALRPSASPGMTGSGMYAASKAAAELLMKYAAIEGAASGVRV 115
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: D8LQS3_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQS3_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 2.570e-17 Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 1
Query: 1 SLVFCFKYQIPAMAKS-GNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
SL +CFKYQIPAM + G KGSIIV++S A R TA P AG G+Y+ASKA A+MLMKYAAIEG SGVRV
Sbjct: 116 SLAWCFKYQIPAMKNTAGGKGSIIVNTSSTALRTTALPGMAGGGMYSASKAAAEMLMKYAAIEGAASGVRV 186
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 4.100e-15 Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1
Query: 1 SLVFCFKYQIPAMAKS-GNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
S+ +C KYQIPAM + G KGSIIV++S+ R +A P G G+Y+ASKA A+MLMKYAAIEG SGVRV
Sbjct: 118 SIAWCLKYQIPAMKDTAGGKGSIIVNTSVTGLRPSALPGLTGAGMYSASKAAAEMLMKYAAIEGAASGVRV 188
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: A0A835ZEC4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC4_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 6.680e-13 Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 1 SLVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
S+VF FKY +PA+ KSG GSI+V+SS A S +A AG+ YAASKA DML+KYAA+E P RV
Sbjct: 124 SVVFGFKYALPAIEKSGGHGSIVVNSSAAGSTASAKSVCAGIAPYAASKAAVDMLVKYAAVEAAPHNTRV 193
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: A0A835YQ90_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ90_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 8.440e-12 Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1
Query: 4 LVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
+ + KYQ+PA+ KSG KGS++++SS A S VTA P G G YA++KA D+LMKYAAIE G RV
Sbjct: 117 VAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRV 185
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: A0A836C9I6_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I6_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 2.170e-11 Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 4 LVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
+ F KYQ+PA+ KSG GSI+++SS+A V P G G ++ASKAGADMLM++AAIE G RV
Sbjct: 113 VAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRV 181
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: A0A835ZCI5_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI5_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 3.300e-11 Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 1 SLVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
S+ F K+ +PA+ KSG GS+I++SS A R TA+P+ AG G+Y+ASKA ADM+MKYAAIE RV
Sbjct: 119 SVAFGLKHVLPAIEKSGGGGSVIINSSGMALRATANPAFAGGGLYSASKAAADMVMKYAAIEASKHKTRV 188
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: A0A835YKB8_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB8_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 4.540e-11 Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 4 LVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
+ + KYQ+PA+ KSG KGS++++SS S VTA P G G YA++KA D+LMKYAAIE G RV
Sbjct: 120 VAYALKYQLPAIEKSGGKGSVVINSSCLGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRV 188
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: A0A836CAF4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF4_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 4.320e-10 Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query: 1 SLVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
S+ KYQ+PA+AKSG G+I+++SSIA S V G G YAA+KA ADMLM++AA+E G ++
Sbjct: 117 SVALGLKYQLPAIAKSGGGGAIVINSSIAGSNVKTRKEFVGNGPYAATKAAADMLMRHAAVEASKQGTQI 186
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Match: A0A835YRJ1_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ1_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 6.210e-10 Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1
Query: 4 LVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAGADMLMKYAAIEGGPSGVRV 210
+ + KYQ+ A+ KSG KGS++++SS A VTA P G YA++KA AD+LMKYAAIE G RV
Sbjct: 118 VAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRV 186 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1114.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1114.1.1 >prot_A-nodosum_M_contig1114.1.1 ID=prot_A-nodosum_M_contig1114.1.1|Name=mRNA_A-nodosum_M_contig1114.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=70bp SLVFCFKYQIPAMAKSGNKGSIIVDSSIAASRVTASPSAAGVGVYAASKAback to top mRNA from alignment at A-nodosum_M_contig1114:6311..7469+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1114.1.1 ID=mRNA_A-nodosum_M_contig1114.1.1|Name=mRNA_A-nodosum_M_contig1114.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1159bp|location=Sequence derived from alignment at A-nodosum_M_contig1114:6311..7469+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1114:6311..7469+ >mRNA_A-nodosum_M_contig1114.1.1 ID=mRNA_A-nodosum_M_contig1114.1.1|Name=mRNA_A-nodosum_M_contig1114.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at A-nodosum_M_contig1114:6311..7469+ (Ascophyllum nodosum dioecious)back to top |