mRNA_A-nodosum_M_contig1113.8.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1113.8.2
Unique NamemRNA_A-nodosum_M_contig1113.8.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1113.8.2 vs. uniprot
Match: D8LCT5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT5_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.950e-21
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:    1 RKLPLSVHLKVWSSTFKSYGQSFEETFNWDRRRQEQTIKDNAAKSVEALKEIAKDVREATHNTPEDLEKSKKALRELLAEIHVRHTR*RLKGRSCLPL 294
            RKLPLSVH ++WSST+K Y +SF E+F W R+R+E+  K  A + +  L+ + K+ RE THN+PEDLEKSK+AL+EL+ EIH      +   +  L L
Sbjct:   24 RKLPLSVHTEIWSSTWKWYRESFAESFAWSRKRKEEAKKREAHEKMNTLRGMVKEAREVTHNSPEDLEKSKEALKELMEEIHENRDELKSAAQEKLDL 121
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BLAST of mRNA_A-nodosum_M_contig1113.8.2 vs. uniprot
Match: A0A6H5JJF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJF4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 8.520e-20
Identity = 48/98 (48.98%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 RKLPLSVHLKVWSSTFKSYGQSFEETFNWDRRRQEQTIKDNAAKSVEALKEIAKDVREATHNTPEDLEKSKKALRELLAEIHVRHTR*RLKGRSCLPL 294
            RKLPLSVH ++WSST+K Y  SF E+F W R+R+E+  K  A + +  L+ + K+ RE THN+PEDLEKSK+AL+EL+ EIH      +   +  L L
Sbjct:   45 RKLPLSVHTEIWSSTWKWYRASFAESFAWSRKRKEEAKKREAHEKMSTLQGMVKEAREITHNSPEDLEKSKEALKELMEEIHENRDELKSAAQEKLDL 142
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1113.8.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCT5_ECTSI3.950e-2148.98Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JJF4_9PHAE8.520e-2048.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1113contigA-nodosum_M_contig1113:172103..174215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size529
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866508.6614764-CDS-A-nodosum_M_contig1113:172102..1722971680866508.6614764-CDS-A-nodosum_M_contig1113:172102..172297Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1113 172103..172297 +
1680866508.672537-CDS-A-nodosum_M_contig1113:173881..1739501680866508.672537-CDS-A-nodosum_M_contig1113:173881..173950Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1113 173882..173950 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866508.687406-UTR-A-nodosum_M_contig1113:173950..1742151680866508.687406-UTR-A-nodosum_M_contig1113:173950..174215Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1113 173951..174215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1113.8.2prot_A-nodosum_M_contig1113.8.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1113 172103..173950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1113.8.2

>prot_A-nodosum_M_contig1113.8.2 ID=prot_A-nodosum_M_contig1113.8.2|Name=mRNA_A-nodosum_M_contig1113.8.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=88bp
RKLPLSVHLKVWSSTFKSYGQSFEETFNWDRRRQEQTIKDNAAKSVEALK
EIAKDVREATHNTPEDLEKSKKALRELLAEIHVRHTR*
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mRNA from alignment at A-nodosum_M_contig1113:172103..174215+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1113.8.2 ID=mRNA_A-nodosum_M_contig1113.8.2|Name=mRNA_A-nodosum_M_contig1113.8.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2113bp|location=Sequence derived from alignment at A-nodosum_M_contig1113:172103..174215+ (Ascophyllum nodosum dioecious)
AGGAAATTACCTCTGTCGGTTCACCTCAAAGTATGGTCGTCCACGTTCAA
GTCCTACGGGCAATCGTTCGAGGAAACGTTCAACTGGGACCGTCGGCGGC
AGGAACAGACCATCAAGGACAATGCCGCGAAGAGCGTGGAGGCGCTGAAG
GAGATCGCCAAGGACGTTCGCGAGGCCACTCACAACACTCCCGAGGTACG
CTCACAAAACTATTGTAAGCAGTCCACTCACAGCACTGTATCGTATGCGG
TACACTCACAACACTATATTGTAGGCAGTACACTCACAACACCATCGTAT
ACAGTACACTAAATCGCATTCTGTATACTATATCATATGATGTACACTAT
ATCGCATGCAGTACACTATATCGTATGTTGTACACCATATCATATGATGT
ACACTATATCGCATGCTGTACACTATATGGTATGCTGTTGTTGGCGGCAG
TGGTGTTGGTGTACAGCATGAAATGATGCAGAGGGAGGGTTGTGTTTTGC
CAGTTGAACTTTTTTATAGGACGTGCAGCAGTATGGATGGATGGATGTAT
GGTCATCACATACTGTATAGCAAGAGTATGGATCAACCGGGTAAGGTTGC
CAGTCCTGCACGTGGTCAGCTGAACAGGGAAAATTCATATTTCACCGTCA
CCGTTGGCGCCTGAGACAGAATTTGGTCTCGCGAGACGGGTTTGGCAGTC
CCGTCCGCGTCAGCTTGCTCATCTCCATACTCAGGCTGAATCTGATGCTT
ACTCACGGGATTTCTCCCGATTTCCGCGGCGGCGTCCATTTAGTTATTTA
AACCGCCATACGCCATCGGGTCAGTCCCGAATTTATCAGGTCACGCGATT
GTGTACCGATGAGTCCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTC
CAGTAACGGGTGCTGTGTTTGCATCACCATGGGCCAATTAACATGCGCCT
CTCTTTCCCACACCCACTATTGGTATGAAGTGGGTATGTTGAAAGTACCG
GCAGCAGTGTCACTCCCCGTTCTCTCTCTCTCTCTGACATCTCACAAGTT
GTTTAGGTTCTAGAACTCTACCTTTATATAAAAAAATAATAGTTCACGTG
TACAAAATGTGCTTGTTCCTCTTATTTCCtTTTTTTTTTCTTCTTCTTTT
TCCCCACTTTTTTGCACATATATGCTGTTTTCCTTCTTTTTTATATTTAT
CTTGTTTTCAGATACGACCGAGGCAAAAAAAAAAAAGAGTATTTTTCATT
TTCTCCTTCCCTTCCTTACCCATGTGTTGATAGATCCTGTATACTAATGG
CTACTGTATAGTAAACGTAAGGTTTCTATGAGTACGACCTCTGCATTCTC
GGGCCAAATCGATCCTGATCCTGCGTTAAAAAAGAGAATAAATAGTAATA
GTACAATTTAGCGCGAAGCCACAACGCCGGGATTAGGAGGAGAGTTTTTA
CAGACGCCTTGTGTTTTTTTTCGAAGAGTTGAGTACCTGTCCGTTTGTAG
GAGGGTGATCCCCCCCCCCCCGCCCTCCAGCGCCCCTCATTGTCTCGTAT
AAACCCAAGGCTCTAATTATTGTTAATGAGGGTTGTCCGAGTCTGACCCC
CACGAATTCGTCTCAACAATTTGTCTATTGACTGAAATTTTCCGTCGGGT
ACCGTAAGTACTGCACCGCTAAAACATGGACACTGCTGCTCGCCCCCCTC
CCATCTACCCGTTGTTGATGTTTTTTGGGGGTTCCGCTATTCTGTTTCGG
GGTTCTTGATTTTTCTCGCGAGCGCGCAGGATCTGGAAAAATCCAAGAAG
GCGCTGAGGGAGCTCCTGGCTGAGATTCACGTGAGGCACACACGCTAGCG
TTTGAAAGGTCGAAGTTGCCTCCCTCTCTCCTAATAGTAGCGATTGCACC
CGCCGGGAGATGTGTAGTCCCATGAGCCAGCGGTACACGGTGATGGGACA
ATCGTGGTTCAAATCTTGCGTTGCGTGTGGCCGTCGGCGTTATTATAGTA
GCCCATATATAGAAAACTCGACCGAGCGTTGTTGATCCTTCTATTGATAG
CATTCCGAAGTGTAGAGTCACATGTGAGGAGTCTATGAGCAGGGCTGCTG
TGCAAAATGGACC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1113:172103..174215+

>mRNA_A-nodosum_M_contig1113.8.2 ID=mRNA_A-nodosum_M_contig1113.8.2|Name=mRNA_A-nodosum_M_contig1113.8.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at A-nodosum_M_contig1113:172103..174215+ (Ascophyllum nodosum dioecious)
AGGAAATTACCTCTGTCGGTTCACCTCAAAGTATGGTCGTCCACGTTCAA
GTCCTACGGGCAATCGTTCGAGGAAACGTTCAACTGGGACCGTCGGCGGC
AGGAACAGACCATCAAGGACAATGCCGCGAAGAGCGTGGAGGCGCTGAAG
GAGATCGCCAAGGACGTTCGCGAGGCCACTCACAACACTCCCGAGGATCT
GGAAAAATCCAAGAAGGCGCTGAGGGAGCTCCTGGCTGAGATTCACGTGA
GGCACACACGCTAG
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