mRNA_A-nodosum_M_contig11108.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11108.4.1
Unique NamemRNA_A-nodosum_M_contig11108.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig11108.4.1 vs. uniprot
Match: A0A6H5L5M8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M8_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 9.400e-36
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFG 195
            GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLG+SQHLKTRFG
Sbjct:  842 GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGTSQHLKTRFG 906
[Close]
BLAST of mRNA_A-nodosum_M_contig11108.4.1 vs. uniprot
Match: D7FZE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE8_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 9.430e-36
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFG 195
            GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLG+SQHLKTRFG
Sbjct: 1709 GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGTSQHLKTRFG 1773
[Close]
BLAST of mRNA_A-nodosum_M_contig11108.4.1 vs. uniprot
Match: D7FZE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE9_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 9.430e-36
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFG 195
            GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLG+SQHLKTRFG
Sbjct: 1729 GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGTSQHLKTRFG 1793
[Close]
BLAST of mRNA_A-nodosum_M_contig11108.4.1 vs. uniprot
Match: A0A6H5JVX0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX0_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.770e-33
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFG 195
            GMDPMARR MWN IMRIVT+N+ CAMILTTHSMEECEALCQRIGIMVGGR+RCLGSSQHLKTRFG
Sbjct:  303 GMDPMARRMMWNYIMRIVTQNRSCAMILTTHSMEECEALCQRIGIMVGGRMRCLGSSQHLKTRFG 367
[Close]
BLAST of mRNA_A-nodosum_M_contig11108.4.1 vs. uniprot
Match: D7FZA6_ECTSI (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA6_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 6.450e-33
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFG 195
            GMDPMARR MWN IMRIVT+N+ CAMILTTHSMEECEALCQRIGIMVGGR+RCLGSSQHLKTRFG
Sbjct: 1731 GMDPMARRMMWNYIMRIVTQNRSCAMILTTHSMEECEALCQRIGIMVGGRMRCLGSSQHLKTRFG 1795
[Close]
BLAST of mRNA_A-nodosum_M_contig11108.4.1 vs. uniprot
Match: A0A6V1S0H3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S0H3_HETAK)

HSP 1 Score: 112 bits (280), Expect = 1.450e-28
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFG 195
            GMDP+ARRFMW VI RI TE ++ A+ILTTHSMEECEALC RIGIMVGG+LRCLGS+QHLK+RFG
Sbjct:   63 GMDPVARRFMWEVITRISTERQQAAIILTTHSMEECEALCTRIGIMVGGQLRCLGSAQHLKSRFG 127
[Close]
BLAST of mRNA_A-nodosum_M_contig11108.4.1 vs. uniprot
Match: A0A835YSC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSC0_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.700e-28
Identity = 52/65 (80.00%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFG 195
            G+DP+ARR MW VI RIVT NK+CA++LTTHSMEE EALCQRIGIMVGGRL+CLGS+QHLK+RFG
Sbjct: 2086 GVDPVARRHMWEVISRIVTTNKQCALVLTTHSMEEAEALCQRIGIMVGGRLQCLGSAQHLKSRFG 2150
[Close]
BLAST of mRNA_A-nodosum_M_contig11108.4.1 vs. uniprot
Match: A0A7S3XYR3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYR3_HETAK)

HSP 1 Score: 113 bits (283), Expect = 8.740e-28
Identity = 52/65 (80.00%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFG 195
            GMDP+ARRFMW+VI +I TE ++CA+ILTTHSMEECEALC RIGIMVGGRLRCLGS+Q LK+RFG
Sbjct: 1721 GMDPVARRFMWDVITKISTERQQCAVILTTHSMEECEALCTRIGIMVGGRLRCLGSAQRLKSRFG 1785
[Close]
BLAST of mRNA_A-nodosum_M_contig11108.4.1 vs. uniprot
Match: A0A7R9U8U7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8U7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.040e-27
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFG 195
            GMDP+A+RFMW VI  I T   +CA+ILTTHSMEECEALC RIGIMVGGR RCLGS+Q LKT+FG
Sbjct:   26 GMDPLAKRFMWEVISAIATRQGKCAVILTTHSMEECEALCSRIGIMVGGRFRCLGSAQRLKTKFG 90
[Close]
BLAST of mRNA_A-nodosum_M_contig11108.4.1 vs. uniprot
Match: W7TRY4_9STRA (Atp-binding cassette superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRY4_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.460e-27
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 GMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGSSQHLKTRFG 195
            GMD +ARRFMW VI  I T+  EC +ILTTHSMEECEALC RIGIMVGGR RC+GS+QHLK+R+G
Sbjct:   18 GMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYG 82
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11108.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5M8_9PHAE9.400e-3698.46ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FZE8_ECTSI9.430e-3698.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZE9_ECTSI9.430e-3698.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVX0_9PHAE3.770e-3390.77ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FZA6_ECTSI6.450e-3390.77ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ect... [more]
A0A6V1S0H3_HETAK1.450e-2880.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YSC0_9STRA4.700e-2880.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XYR3_HETAK8.740e-2880.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7R9U8U7_9STRA3.040e-2775.38Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TRY4_9STRA6.460e-2773.85Atp-binding cassette superfamily n=1 Tax=Nannochlo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11108contigA-nodosum_M_contig11108:11528..12137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZE8
PFAMsABC2_membrane_3,ABC_tran
Model size197
Max annot lvl2759|Eukaryota
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0099120
Exons2
Evalue1.3e-35
EggNOG OGsCOG1131@1|root,KOG0059@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size192
COG categoryV
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866505.9838834-CDS-A-nodosum_M_contig11108:11527..116271680866505.9838834-CDS-A-nodosum_M_contig11108:11527..11627Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11108 11528..11627 -
1680866505.998793-CDS-A-nodosum_M_contig11108:12042..121341680866505.998793-CDS-A-nodosum_M_contig11108:12042..12134Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11108 12043..12134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866506.0147934-UTR-A-nodosum_M_contig11108:12134..121371680866506.0147934-UTR-A-nodosum_M_contig11108:12134..12137Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11108 12135..12137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11108.4.1prot_A-nodosum_M_contig11108.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11108 11528..12134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11108.4.1

>prot_A-nodosum_M_contig11108.4.1 ID=prot_A-nodosum_M_contig11108.4.1|Name=mRNA_A-nodosum_M_contig11108.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=64bp
MDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRL
RCLGSSQHLKTRFG
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mRNA from alignment at A-nodosum_M_contig11108:11528..12137-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11108.4.1 ID=mRNA_A-nodosum_M_contig11108.4.1|Name=mRNA_A-nodosum_M_contig11108.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=610bp|location=Sequence derived from alignment at A-nodosum_M_contig11108:11528..12137- (Ascophyllum nodosum dioecious)
GGAATGGACCCCATGGCGCGGCGCTTCATGTGGAACGTGATCATGCGCAT
CGTGACGGAGAACAAGGAGTGCGCCATGATCCTCACCACGCACAGGTGAG
TTTGAGCACTTCGTAAAGGTGGACACGAGTTTCGTGCAGTCTTTGATCAC
ATCTCTGTATACTGACCCGATGGCGTGAGTCGATTTAAAGTAAATAAATG
GAGGCCGCCGTGGAACTCGGGAGGAATCCCGTAAGTAAGACTAGATTCAG
CCTGAGTATGGAGATGAGCAAGCTGATGCGGGGCGGGACTGCCAAACCCG
TCTCGCGAGACCAAATTCTCAGGCGACAGGGAAATATTCATTTTCCCTGT
TCAGCTGACCACGTGCAGGATTGGCAGCCTTACCCGGTTGATCCATGCTC
TTGCTATATGTGATGACCATACATACATACAAATTATGCTGACTCACGGC
TCTTTGCTCCCCTCCTTCGATAAACGTGATAACATGCGGCACGTGGTCGG
GCGACCACAGCATGGAAGAGTGTGAGGCCCTGTGTCAGCGCATTGGCATC
ATGGTTGGAGGGCGCCTGCGATGCCTGGGTAGCTCGCAGCACCTTAAGAC
GCGCTTCGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11108:11528..12137-

>mRNA_A-nodosum_M_contig11108.4.1 ID=mRNA_A-nodosum_M_contig11108.4.1|Name=mRNA_A-nodosum_M_contig11108.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig11108:11528..12137- (Ascophyllum nodosum dioecious)
ATGGACCCCATGGCGCGGCGCTTCATGTGGAACGTGATCATGCGCATCGT
GACGGAGAACAAGGAGTGCGCCATGATCCTCACCACGCACAGCATGGAAG
AGTGTGAGGCCCTGTGTCAGCGCATTGGCATCATGGTTGGAGGGCGCCTG
CGATGCCTGGGTAGCTCGCAGCACCTTAAGACGCGCTTCGGC
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