mRNA_A-nodosum_M_contig1110.7.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A6H5J6X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X1_9PHAE) HSP 1 Score: 345 bits (885), Expect = 3.370e-108 Identity = 253/554 (45.67%), Postives = 297/554 (53.61%), Query Frame = 1
Query: 13 VKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGGGRPPVDARNAALKAAERRQRQQAVMG-GGTRLGG----SLDGSRSAAERAAAAAEWRHAVSRGCAATQDGTSSQVDGGCSSHGGDPDRHEDGAGGSEWDCGLCTLHNGSAMGACDACGTPRPASXXXXXXXXXXXXXXXXXXXXGSGDVRNVYSGEER--AEEVGLAKASAMARGRTKRSDRSGAGSAPTAATVGRRRNG------------LPIQS-TWTCRECPFAFPNAAERRTCESCGAPR---------------------GKGSCADGRGLQGARPELSP-WACGLCTFVNPGVFLSCRICQALRDAEGAAERNSRER-------------------------------------QDGAAGSLVDAPVGGETWNHPPGGADAAHVFPENVG-GSSSTVGE--VCSMCTLRNTAEASTCAACGIPLAESAAAMSAPSEG 1425
VKPIC+AHKW V LL EFIP NPSLLG+NVNR QKI IRLRPPS+ G+FYPYE ++ TMLHEL H +IGPH+A FY++LD+L DEC+KL REGITGRNMPFAG G+PLGGGR P DAR AALKAAE+RQRQQ +MG GG RLGG S + SAA+RAAAAA+WRHAVS+GC GC++ D +DG W+CGLCTL N + ACDACG R A+ XXXXXXXXXX +G ++ A G A + GR + +GA A +VG R G LP TWTCR CPF+FPN +ERRTCESCGA R G G GA EL P W C CT VNPG+FL C +C A R A+ AAE Q + G+ VGG G P S+ GE VC +CTLRN EAS C ACGIPLAES AA++A + G
Sbjct: 81 VKPICVAHKWKVVLLLEFIPNNPSLLGLNVNRGQKICIRLRPPSDEGSFYPYEFIIGTMLHELVHNQIGPHSAKFYRVLDQLNDECDKLTREGITGRNMPFAGDGQPLGGGRAPNDARAAALKAAEKRQRQQGIMGSGGQRLGGVSGSSPSDAISAAQRAAAAAQWRHAVSQGCRGHH---------GCTAGVKADDDADDG---DHWECGLCTLFNSLTVNACDACGKERSATPAGKSVRGRGXXXXXXXXXXXXXVAGGTTTGRQKRPAPTTGAAAGA----GRLQNKSTAGARMASDGRSVGAPRGGXXXXXXXXXXXRLPSAGRTWTCRSCPFSFPNVSERRTCESCGAARLLPADAGSGXXXXXXXXXAATAVGGTTGGHTSWGA--ELLPSWTCEACTVVNPGMFLGCSVCGAERPADEAAEAGXXXXXXXXXXXXXATLSSEWTAEVGXXXXXXXXXXXGWMAAQGSSGGTDCSVGVGGAAVGETVGFGGRTRDDPGMESCWSAQPTGETRVCRLCTLRNPPEASNCKACGIPLAESEAAVAATASG 616
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: D7FMC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC5_ECTSI) HSP 1 Score: 281 bits (719), Expect = 2.930e-84 Identity = 222/557 (39.86%), Postives = 264/557 (47.40%), Query Frame = 1
Query: 1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGGGRPPVDARNAALKAAERRQRQQAVMGGGTRLGGSLDGSRSAAERAAAAAEWRHA-----VSRGCAATQDGTSSQVDGGCSSHGGDPDRHEDGAGGSEWDCGLCTLHNGSAMGACDACGTPRPASXXXXXXXXXXXXXXXXXXXXGSGDVRNVYSGEERAEEVGLAKASAMAR--------GRTKRSDRSGAGSAPTAATVGRRRN-----------GLPIQS-TWTCRECPFAFPNAAERRTCESCGAPR------GKGSCADG--------RGLQGARP----ELSP-WACGLCTFVNPGVFLSCRICQALRDAEGA-------------AERNSRERQDGAAGSLVDA--------PVGGETWNHPPGGADAAHVFPENVG--------------GSSSTVGE--VCSMCTLRNTAEASTCAACGIPLAESAAAMSAPSEG 1425
L+ +VKPIC+AHKW V LL EFIP NP LLG+NVNR QKI IRLRPPS+ G+FYPYE +L TMLHEL H +IGPH+A FY+MLD+L DEC+KL+REGITGRNMPFAG G+ LGGGR P DAR AALKA + G + GS VS+GC T+ + G D +DG W+CGLCTL N + ACDACG R A+ XX GR ++ +GA +A +VG R GLP TWTCR CPF+FPNA+ERRTCESCGA R G G RG G EL P W C CT VNPG+FL C +C A R AE A A +S + G V A GG + G AD E VG GS+ GE +C +CTLRN EAS C ACGIPLA+S AA++A + G
Sbjct: 32 LADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARAAALKAXXXXXXXXXXXXXXXQRLGGVSGSXXXXXXXXXXXXXXXXXXXXXVSQGCGGHHGCTAGEKTG---------DNADDG---DHWECGLCTLFNSLTVNACDACGKERSANPPGNSVRDRGAGSSTGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGRLQKKSTAGARTASDGRSVGAPRGXXXXXXXXXXXGLPSAGRTWTCRSCPFSFPNASERRTCESCGAARLLPADAGSGXXXXXXXXXATAIRGTTGGHTSWDAELLPSWTCDACTVVNPGMFLGCSVCGAERPAEEAXXXXXXXXXXXNLATLSSEWTAEVGRGGGVTAGGWMAAQGSSGGTDCSVGVGTADVR----ETVGIGGRIRDDPGMESWGSAQPAGEARMCRLCTLRNPPEASDCEACGIPLADSEAAVAATASG 572
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A6S7MWI1_LACSI (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A6S7MWI1_LACSI) HSP 1 Score: 160 bits (406), Expect = 8.950e-42 Identity = 105/242 (43.39%), Postives = 138/242 (57.02%), Query Frame = 1
Query: 1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGG----GRPPVDARNAALKAAERRQRQQAVMGGGT-RLGG--SLDGSRSAAERAAAAAEWRHAVSRGCAATQ----DGTS-SQVDGGCSSHGGDPDRHEDGAGGSEWDCGLCTLHNGSAMGACDACGTPR 687
++ +V+PI HKW V +L EF PPNP+LLG+N+N ++ +RLR +N F+PYE +L TMLHEL H + GPHNA FY +LDE+R ECE+LM +GITG F G+ LGG + P R AL AA+ R + ++ G RLGG S+ + S + AA AAE R CA+ GTS + V SS G+P S W CG CTL N + C+ACGTPR
Sbjct: 30 IAKQVQPIMRKHKWKVNILSEFCPPNPALLGLNINGGAEVKLRLRRQNNEWDFFPYEQILDTMLHELCHNQYGPHNADFYNLLDEIRKECEELMAKGITGTGRGFDLPGRRLGGYFRQQQTPSSLRQKALSAAQNRAQMGTLLPSGPHRLGGDSSMKTALSPVQAAAMAAERRLHDDLWCASKSFQEPSGTSEASVSQNISSSEGEPKA-------SSWQCGTCTLLNQPLLLTCEACGTPR 264
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A2U1PKA2_ARTAN (WLM-like protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PKA2_ARTAN) HSP 1 Score: 158 bits (400), Expect = 9.720e-41 Identity = 110/252 (43.65%), Postives = 146/252 (57.94%), Query Frame = 1
Query: 1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGG--GRPPVDA-RNAALKAAERR-QRQQAVMGGGTRLGG--SLDGSRSAAERAAAAAEWRHAVSRGCA-------------ATQDGTSSQVDGGC--SSHG-GDPDRHEDGAGGSEWDCGLCTLHNGSAMGACDACGTPR 687
++ +V+PI KW V+LL EF PPNP+LLG+NVN +++ +RLR +N F+PYE +L TMLHEL H + GPHNA FY +LDE+R ECE+LM +GITG F GK LGG +PP+ + R AL AAE R QR + G RLGG S+ S + AA AAE R C+ A+Q+ +SS+ SSHG G+P + W+CG+CTL N + C+ACGT R
Sbjct: 31 VAKQVQPIMRKRKWKVKLLSEFCPPNPALLGLNVNGGEEVQLRLRRQNNEWDFFPYEQILDTMLHELCHNQFGPHNADFYNLLDEIRKECEELMAKGITGSGQGFDLRGKRLGGYSRQPPLSSLRQKALSAAENRVQRGTLLPSGPKRLGGDSSMKEVLSPIQAAAMAAERRLHDDLWCSSQVEELPETSKASASQELSSSEAKPSTLVSSHGEGEPK--------ASWECGVCTLLNQALALTCEACGTQR 274
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A251U2C0_HELAN (Putative zinc finger, RanBP2-type, WLM domain protein n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U2C0_HELAN) HSP 1 Score: 155 bits (391), Expect = 9.770e-40 Identity = 106/239 (44.35%), Postives = 138/239 (57.74%), Query Frame = 1
Query: 1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGG--GRPPVDA-RNAALKAAERRQRQQAVMGGGTRLGG--SLDGSRSAAERAAAAAEWRHAVSRGCAATQDGTSSQVD----GGCSSHGGDPDRHEDGAGGSEWDCGLCTLHNGSAMGACDACGTPR 687
++ +V+PI W V LL EF P NP+LLG+NVN Q++ +RLR +N F+PYE +L TMLHEL H + GPHNA FY +LDE+R ECE+LM +GITG F GK LGG +PP+ + R AL AAE R Q G RLGG SL + + AA AAE R C++ +GTS D GG S+ + ++ E+ A + W CG CTL N C+AC T R
Sbjct: 14 VAKQVQPIMRNRGWKVNLLSEFWPSNPALLGLNVNGGQEVKLRLRRQNNQWDFFPYEQILDTMLHELCHNQYGPHNAHFYNLLDEIRKECEQLMAKGITGTGQGFDLRGKRLGGFTRQPPLSSLRQKALAAAE--TRVQRGPSGPKRLGGDSSLRAVLTPIQAAAMAAERRLHDDLWCSSQVEGTSVLPDIISCGGESTPVSNDEKEEEAAANASWQCGACTLLNKPLSLTCEACETQR 250
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A835YTT9_9STRA (WLM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT9_9STRA) HSP 1 Score: 147 bits (372), Expect = 5.270e-39 Identity = 73/137 (53.28%), Postives = 92/137 (67.15%), Query Frame = 1
Query: 10 KVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNRQKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGGGRPPVDARNAALKAAERRQRQQAVMGG 420
+VKPIC+ H+W+V LEEF P N LLG+N+NR KI +RLR P +A A YP+E L +LHELTHM G H+A FY++LD LR+ECE LM GI+GRNMP+ G G+ LGGG D R RR + A+M G
Sbjct: 1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINRTKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRAXXXXXXXRRAQAGAIMQG 137
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A4D8YQM0_SALSN (Uncharacterized protein n=3 Tax=Salvia TaxID=21880 RepID=A0A4D8YQM0_SALSN) HSP 1 Score: 154 bits (388), Expect = 6.310e-39 Identity = 105/244 (43.03%), Postives = 140/244 (57.38%), Query Frame = 1
Query: 1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGG--GRPPVDA-RNAALKAAERRQRQQAVMGGGT-RLGG--SLDGSRSAAERAAAAAEWRHAVSRGCAA--------TQDGTSSQVDGGCSSHGGDPDRHEDGAGGSEWDCGLCTLHNGSAMGACDACGTPR 687
++ +V+PI KW V++L EF PPNPSLLG+N+ ++ +RLR P+N F+PY+ +L+TMLHEL H E GPHNA FY +LDELR ECE+LM +GITG F GK LGG +PP+ + R AL AAE+R R +A++ G RLGG S+ S + AA AAE R C + ++ TSS + D +D S W C CTL N C+ACGTP+
Sbjct: 44 VAKQVQPIMRKRKWKVKVLSEFCPPNPSLLGLNIGGGTEVKLRLRRPNNEWDFFPYDHILNTMLHELCHNEHGPHNADFYNLLDELRKECEELMAKGITGTGQGFDLPGKRLGGYSRQPPLSSLRQQALAAAEKRSRNEALLPHGPKRLGGDSSIKAVLSPVQAAAMAAERRLHDDLWCGSKSLEHEGPSESPTSSLDVRTTRTSVLDSTSVQDQKDESSWQCDTCTLLNQQRALICEACGTPK 287
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A1S3Y1F5_TOBAC (DNA-dependent metalloprotease WSS1-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3Y1F5_TOBAC) HSP 1 Score: 149 bits (376), Expect = 2.040e-37 Identity = 103/239 (43.10%), Postives = 136/239 (56.90%), Query Frame = 1
Query: 1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGG--GRPPVDA-RNAALKAAERRQRQQAVMGGGT-RLGG--SLDGSRSAAERAAAAAEWRHAVSRGCAATQDGTSSQVDGGCSSHGGDPDRHEDGAGGSE---WDCGLCTLHNGSAMGACDACGTPR 687
++ +V+PI KW V+LL EF P NPSLLG+N+ ++ +RLR P+N F+PY +LHTMLHEL H E GPHNA FY +LDE+R ECE+LM +GITG F GK LGG +PP+ + R AL AAE R R A++ G RLGG S+ + + + AA AA+ R C + + + +S G PD H G W+C CTL N C ACGTP+
Sbjct: 30 VAKQVQPIMRQRKWKVKLLSEFCPANPSLLGLNIGGGAEVKLRLRRPNNELDFFPYTQILHTMLHELCHNEYGPHNADFYNLLDEIRKECEELMVKGITGTGQGFDLPGKRLGGFSRQPPLSSLRQKALAAAENRSRVGALLPSGPKRLGGDSSIKAALTPIQAAAMAAKRRLHDDLWCGSKMVESEGPSESSKTSVGPKPD-HISVLGTDPQIMWECCTCTLLNQPLALLCGACGTPK 267
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: UPI0010A440BF (DNA-dependent metalloprotease WSS1-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A440BF) HSP 1 Score: 149 bits (376), Expect = 2.700e-37 Identity = 107/255 (41.96%), Postives = 140/255 (54.90%), Query Frame = 1
Query: 1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGG--GRPPVDA-RNAALKAAERRQRQQAVMGGGT-RLGG--SLDGSRSAAERAAAAAEWRHAVSRGCAA-------------TQDGTSSQVDGGCSSHGG------DPDRHEDGAGGSEWDCGLCTLHNGSAMGACDACGTPR 687
++ +V+PI W V++L EF P NPSL G+N+ +I +RLR P F+PYE +L TMLHEL H E GPHNA FY +LDE+R ECE+LM +GI+G F G+ LGG +PP+ + R AAL AAE R R A++ G RLGG S+ + S + AA AAE R C + T G S + CSS G D + +DGA +W C +CTL N S C+ACGT R
Sbjct: 30 VAKQVQPIMRKRNWKVKVLSEFCPANPSLQGLNIGPGAEIKLRLRRPDREWDFFPYEQILDTMLHELCHNEHGPHNAQFYNLLDEIRKECEELMAKGISGTGQGFDLPGRRLGGFSRQPPLPSLRQAALAAAESRARHGALLPSGPQRLGGNSSIKSALSPVQAAAMAAERRLHDDIWCGSRSANGDTHNHDNTTLIGPSGRQGMSCSSDNGSLQSTMDRETADDGA---KWQCNICTLLNESIALECEACGTQR 281
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A6P5GSH7_ANACO (DNA-dependent metalloprotease WSS1 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GSH7_ANACO) HSP 1 Score: 149 bits (377), Expect = 3.580e-37 Identity = 110/284 (38.73%), Postives = 147/284 (51.76%), Query Frame = 1
Query: 1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGG--GRPPVDA-RNAALKAAERRQRQQAVMGGGTR-LGGSLD--GSRSAAERAAAAAEWRHAVSRGCAA-------TQDGTSSQVDGGCSSHGGDPDRHEDGAG-----GSE-----------------------------------WDCGLCTLHNGSAMGACDACGTPRP 690
++ +V+PI KW V+LL EF P NPSLLG+NV ++ +RLR P+ F+P++ +L TMLHEL H+E GPHNA FYK+ DE+R ECE+LM +GITG F G+ LGG +PPV + R AL AAE+R R A+M G R LGG+ D + S + AA AAE R CA+ + +S + G SSHG +DG G G+E W+C +CTL N C+ACGT +P
Sbjct: 30 VAKQVEPIMRRRKWRVKLLSEFCPANPSLLGLNVGGGAEVKLRLRRPNRDWDFFPFDQVLDTMLHELCHIEHGPHNAQFYKLWDEIRKECEELMSKGITGTGQGFDAPGRRLGGFSRQPPVSSLRQTALAAAEKRARGSALMPSGPRRLGGNNDIMSALSPIQAAAMAAERRLYDDVWCASGWHDLPTVAESSSKDIGGAGSSHG-----EKDGTGKRLRTGTEGAPTGSSPDVGYRGASVSGVSSSNWTADSAEDRAMWECSVCTLLNQPLSPICEACGTAKP 308 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1110.7.1 >prot_A-nodosum_M_contig1110.7.1 ID=prot_A-nodosum_M_contig1110.7.1|Name=mRNA_A-nodosum_M_contig1110.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=481bp MAHKWNVRLLEEFIPPNPSLLGMNVNRQKILIRLRPPSNAGAFYPYEDLLback to top mRNA from alignment at A-nodosum_M_contig1110:75376..78407- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1110.7.1 ID=mRNA_A-nodosum_M_contig1110.7.1|Name=mRNA_A-nodosum_M_contig1110.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3032bp|location=Sequence derived from alignment at A-nodosum_M_contig1110:75376..78407- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1110:75376..78407- >mRNA_A-nodosum_M_contig1110.7.1 ID=mRNA_A-nodosum_M_contig1110.7.1|Name=mRNA_A-nodosum_M_contig1110.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1443bp|location=Sequence derived from alignment at A-nodosum_M_contig1110:75376..78407- (Ascophyllum nodosum dioecious)back to top |