mRNA_A-nodosum_M_contig1110.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1110.7.1
Unique NamemRNA_A-nodosum_M_contig1110.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A6H5J6X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X1_9PHAE)

HSP 1 Score: 345 bits (885), Expect = 3.370e-108
Identity = 253/554 (45.67%), Postives = 297/554 (53.61%), Query Frame = 1
Query:   13 VKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGGGRPPVDARNAALKAAERRQRQQAVMG-GGTRLGG----SLDGSRSAAERAAAAAEWRHAVSRGCAATQDGTSSQVDGGCSSHGGDPDRHEDGAGGSEWDCGLCTLHNGSAMGACDACGTPRPASXXXXXXXXXXXXXXXXXXXXGSGDVRNVYSGEER--AEEVGLAKASAMARGRTKRSDRSGAGSAPTAATVGRRRNG------------LPIQS-TWTCRECPFAFPNAAERRTCESCGAPR---------------------GKGSCADGRGLQGARPELSP-WACGLCTFVNPGVFLSCRICQALRDAEGAAERNSRER-------------------------------------QDGAAGSLVDAPVGGETWNHPPGGADAAHVFPENVG-GSSSTVGE--VCSMCTLRNTAEASTCAACGIPLAESAAAMSAPSEG 1425
            VKPIC+AHKW V LL EFIP NPSLLG+NVNR QKI IRLRPPS+ G+FYPYE ++ TMLHEL H +IGPH+A FY++LD+L DEC+KL REGITGRNMPFAG G+PLGGGR P DAR AALKAAE+RQRQQ +MG GG RLGG    S   + SAA+RAAAAA+WRHAVS+GC             GC++     D  +DG     W+CGLCTL N   + ACDACG  R A+          XXXXXXXXXX         +G ++  A   G A  +    GR +    +GA  A    +VG  R G            LP    TWTCR CPF+FPN +ERRTCESCGA R                       G    G    GA  EL P W C  CT VNPG+FL C +C A R A+ AAE                                           Q  + G+     VGG       G        P      S+   GE  VC +CTLRN  EAS C ACGIPLAES AA++A + G
Sbjct:   81 VKPICVAHKWKVVLLLEFIPNNPSLLGLNVNRGQKICIRLRPPSDEGSFYPYEFIIGTMLHELVHNQIGPHSAKFYRVLDQLNDECDKLTREGITGRNMPFAGDGQPLGGGRAPNDARAAALKAAEKRQRQQGIMGSGGQRLGGVSGSSPSDAISAAQRAAAAAQWRHAVSQGCRGHH---------GCTAGVKADDDADDG---DHWECGLCTLFNSLTVNACDACGKERSATPAGKSVRGRGXXXXXXXXXXXXXVAGGTTTGRQKRPAPTTGAAAGA----GRLQNKSTAGARMASDGRSVGAPRGGXXXXXXXXXXXRLPSAGRTWTCRSCPFSFPNVSERRTCESCGAARLLPADAGSGXXXXXXXXXAATAVGGTTGGHTSWGA--ELLPSWTCEACTVVNPGMFLGCSVCGAERPADEAAEAGXXXXXXXXXXXXXATLSSEWTAEVGXXXXXXXXXXXGWMAAQGSSGGTDCSVGVGGAAVGETVGFGGRTRDDPGMESCWSAQPTGETRVCRLCTLRNPPEASNCKACGIPLAESEAAVAATASG 616          
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: D7FMC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC5_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 2.930e-84
Identity = 222/557 (39.86%), Postives = 264/557 (47.40%), Query Frame = 1
Query:    1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGGGRPPVDARNAALKAAERRQRQQAVMGGGTRLGGSLDGSRSAAERAAAAAEWRHA-----VSRGCAATQDGTSSQVDGGCSSHGGDPDRHEDGAGGSEWDCGLCTLHNGSAMGACDACGTPRPASXXXXXXXXXXXXXXXXXXXXGSGDVRNVYSGEERAEEVGLAKASAMAR--------GRTKRSDRSGAGSAPTAATVGRRRN-----------GLPIQS-TWTCRECPFAFPNAAERRTCESCGAPR------GKGSCADG--------RGLQGARP----ELSP-WACGLCTFVNPGVFLSCRICQALRDAEGA-------------AERNSRERQDGAAGSLVDA--------PVGGETWNHPPGGADAAHVFPENVG--------------GSSSTVGE--VCSMCTLRNTAEASTCAACGIPLAESAAAMSAPSEG 1425
            L+ +VKPIC+AHKW V LL EFIP NP LLG+NVNR QKI IRLRPPS+ G+FYPYE +L TMLHEL H +IGPH+A FY+MLD+L DEC+KL+REGITGRNMPFAG G+ LGGGR P DAR AALKA               +  G + GS                     VS+GC      T+ +  G         D  +DG     W+CGLCTL N   + ACDACG  R A+                  XX                                    GR ++   +GA +A    +VG  R            GLP    TWTCR CPF+FPNA+ERRTCESCGA R      G G             RG  G       EL P W C  CT VNPG+FL C +C A R AE A             A  +S    +   G  V A          GG   +   G AD      E VG              GS+   GE  +C +CTLRN  EAS C ACGIPLA+S AA++A + G
Sbjct:   32 LADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARAAALKAXXXXXXXXXXXXXXXQRLGGVSGSXXXXXXXXXXXXXXXXXXXXXVSQGCGGHHGCTAGEKTG---------DNADDG---DHWECGLCTLFNSLTVNACDACGKERSANPPGNSVRDRGAGSSTGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGRLQKKSTAGARTASDGRSVGAPRGXXXXXXXXXXXGLPSAGRTWTCRSCPFSFPNASERRTCESCGAARLLPADAGSGXXXXXXXXXATAIRGTTGGHTSWDAELLPSWTCDACTVVNPGMFLGCSVCGAERPAEEAXXXXXXXXXXXNLATLSSEWTAEVGRGGGVTAGGWMAAQGSSGGTDCSVGVGTADVR----ETVGIGGRIRDDPGMESWGSAQPAGEARMCRLCTLRNPPEASDCEACGIPLADSEAAVAATASG 572          
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A6S7MWI1_LACSI (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A6S7MWI1_LACSI)

HSP 1 Score: 160 bits (406), Expect = 8.950e-42
Identity = 105/242 (43.39%), Postives = 138/242 (57.02%), Query Frame = 1
Query:    1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGG----GRPPVDARNAALKAAERRQRQQAVMGGGT-RLGG--SLDGSRSAAERAAAAAEWRHAVSRGCAATQ----DGTS-SQVDGGCSSHGGDPDRHEDGAGGSEWDCGLCTLHNGSAMGACDACGTPR 687
            ++ +V+PI   HKW V +L EF PPNP+LLG+N+N   ++ +RLR  +N   F+PYE +L TMLHEL H + GPHNA FY +LDE+R ECE+LM +GITG    F   G+ LGG     + P   R  AL AA+ R +   ++  G  RLGG  S+  + S  + AA AAE R      CA+       GTS + V    SS  G+P         S W CG CTL N   +  C+ACGTPR
Sbjct:   30 IAKQVQPIMRKHKWKVNILSEFCPPNPALLGLNINGGAEVKLRLRRQNNEWDFFPYEQILDTMLHELCHNQYGPHNADFYNLLDEIRKECEELMAKGITGTGRGFDLPGRRLGGYFRQQQTPSSLRQKALSAAQNRAQMGTLLPSGPHRLGGDSSMKTALSPVQAAAMAAERRLHDDLWCASKSFQEPSGTSEASVSQNISSSEGEPKA-------SSWQCGTCTLLNQPLLLTCEACGTPR 264          
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A2U1PKA2_ARTAN (WLM-like protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PKA2_ARTAN)

HSP 1 Score: 158 bits (400), Expect = 9.720e-41
Identity = 110/252 (43.65%), Postives = 146/252 (57.94%), Query Frame = 1
Query:    1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGG--GRPPVDA-RNAALKAAERR-QRQQAVMGGGTRLGG--SLDGSRSAAERAAAAAEWRHAVSRGCA-------------ATQDGTSSQVDGGC--SSHG-GDPDRHEDGAGGSEWDCGLCTLHNGSAMGACDACGTPR 687
            ++ +V+PI    KW V+LL EF PPNP+LLG+NVN  +++ +RLR  +N   F+PYE +L TMLHEL H + GPHNA FY +LDE+R ECE+LM +GITG    F   GK LGG   +PP+ + R  AL AAE R QR   +  G  RLGG  S+    S  + AA AAE R      C+             A+Q+ +SS+       SSHG G+P         + W+CG+CTL N +    C+ACGT R
Sbjct:   31 VAKQVQPIMRKRKWKVKLLSEFCPPNPALLGLNVNGGEEVQLRLRRQNNEWDFFPYEQILDTMLHELCHNQFGPHNADFYNLLDEIRKECEELMAKGITGSGQGFDLRGKRLGGYSRQPPLSSLRQKALSAAENRVQRGTLLPSGPKRLGGDSSMKEVLSPIQAAAMAAERRLHDDLWCSSQVEELPETSKASASQELSSSEAKPSTLVSSHGEGEPK--------ASWECGVCTLLNQALALTCEACGTQR 274          
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A251U2C0_HELAN (Putative zinc finger, RanBP2-type, WLM domain protein n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U2C0_HELAN)

HSP 1 Score: 155 bits (391), Expect = 9.770e-40
Identity = 106/239 (44.35%), Postives = 138/239 (57.74%), Query Frame = 1
Query:    1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGG--GRPPVDA-RNAALKAAERRQRQQAVMGGGTRLGG--SLDGSRSAAERAAAAAEWRHAVSRGCAATQDGTSSQVD----GGCSSHGGDPDRHEDGAGGSEWDCGLCTLHNGSAMGACDACGTPR 687
            ++ +V+PI     W V LL EF P NP+LLG+NVN  Q++ +RLR  +N   F+PYE +L TMLHEL H + GPHNA FY +LDE+R ECE+LM +GITG    F   GK LGG   +PP+ + R  AL AAE   R Q    G  RLGG  SL    +  + AA AAE R      C++  +GTS   D    GG S+   + ++ E+ A  + W CG CTL N      C+AC T R
Sbjct:   14 VAKQVQPIMRNRGWKVNLLSEFWPSNPALLGLNVNGGQEVKLRLRRQNNQWDFFPYEQILDTMLHELCHNQYGPHNAHFYNLLDEIRKECEQLMAKGITGTGQGFDLRGKRLGGFTRQPPLSSLRQKALAAAE--TRVQRGPSGPKRLGGDSSLRAVLTPIQAAAMAAERRLHDDLWCSSQVEGTSVLPDIISCGGESTPVSNDEKEEEAAANASWQCGACTLLNKPLSLTCEACETQR 250          
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A835YTT9_9STRA (WLM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT9_9STRA)

HSP 1 Score: 147 bits (372), Expect = 5.270e-39
Identity = 73/137 (53.28%), Postives = 92/137 (67.15%), Query Frame = 1
Query:   10 KVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNRQKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGGGRPPVDARNAALKAAERRQRQQAVMGG 420
            +VKPIC+ H+W+V  LEEF P N  LLG+N+NR KI +RLR P +A A YP+E  L  +LHELTHM  G H+A FY++LD LR+ECE LM  GI+GRNMP+ G G+ LGGG    D R        RR +  A+M G
Sbjct:    1 QVKPICVKHEWSVAHLEEFYPSNKGLLGVNINRTKICVRLREPRDADALYPFELALDIVLHELTHMVHGAHSADFYRLLDALREECEALMTAGISGRNMPWQGEGRALGGGSAARDVRAXXXXXXXRRAQAGAIMQG 137          
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A4D8YQM0_SALSN (Uncharacterized protein n=3 Tax=Salvia TaxID=21880 RepID=A0A4D8YQM0_SALSN)

HSP 1 Score: 154 bits (388), Expect = 6.310e-39
Identity = 105/244 (43.03%), Postives = 140/244 (57.38%), Query Frame = 1
Query:    1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGG--GRPPVDA-RNAALKAAERRQRQQAVMGGGT-RLGG--SLDGSRSAAERAAAAAEWRHAVSRGCAA--------TQDGTSSQVDGGCSSHGGDPDRHEDGAGGSEWDCGLCTLHNGSAMGACDACGTPR 687
            ++ +V+PI    KW V++L EF PPNPSLLG+N+    ++ +RLR P+N   F+PY+ +L+TMLHEL H E GPHNA FY +LDELR ECE+LM +GITG    F   GK LGG   +PP+ + R  AL AAE+R R +A++  G  RLGG  S+    S  + AA AAE R      C +        ++  TSS       +   D    +D    S W C  CTL N      C+ACGTP+
Sbjct:   44 VAKQVQPIMRKRKWKVKVLSEFCPPNPSLLGLNIGGGTEVKLRLRRPNNEWDFFPYDHILNTMLHELCHNEHGPHNADFYNLLDELRKECEELMAKGITGTGQGFDLPGKRLGGYSRQPPLSSLRQQALAAAEKRSRNEALLPHGPKRLGGDSSIKAVLSPVQAAAMAAERRLHDDLWCGSKSLEHEGPSESPTSSLDVRTTRTSVLDSTSVQDQKDESSWQCDTCTLLNQQRALICEACGTPK 287          
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A1S3Y1F5_TOBAC (DNA-dependent metalloprotease WSS1-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3Y1F5_TOBAC)

HSP 1 Score: 149 bits (376), Expect = 2.040e-37
Identity = 103/239 (43.10%), Postives = 136/239 (56.90%), Query Frame = 1
Query:    1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGG--GRPPVDA-RNAALKAAERRQRQQAVMGGGT-RLGG--SLDGSRSAAERAAAAAEWRHAVSRGCAATQDGTSSQVDGGCSSHGGDPDRHEDGAGGSE---WDCGLCTLHNGSAMGACDACGTPR 687
            ++ +V+PI    KW V+LL EF P NPSLLG+N+    ++ +RLR P+N   F+PY  +LHTMLHEL H E GPHNA FY +LDE+R ECE+LM +GITG    F   GK LGG   +PP+ + R  AL AAE R R  A++  G  RLGG  S+  + +  + AA AA+ R      C +    +    +   +S G  PD H    G      W+C  CTL N      C ACGTP+
Sbjct:   30 VAKQVQPIMRQRKWKVKLLSEFCPANPSLLGLNIGGGAEVKLRLRRPNNELDFFPYTQILHTMLHELCHNEYGPHNADFYNLLDEIRKECEELMVKGITGTGQGFDLPGKRLGGFSRQPPLSSLRQKALAAAENRSRVGALLPSGPKRLGGDSSIKAALTPIQAAAMAAKRRLHDDLWCGSKMVESEGPSESSKTSVGPKPD-HISVLGTDPQIMWECCTCTLLNQPLALLCGACGTPK 267          
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: UPI0010A440BF (DNA-dependent metalloprotease WSS1-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A440BF)

HSP 1 Score: 149 bits (376), Expect = 2.700e-37
Identity = 107/255 (41.96%), Postives = 140/255 (54.90%), Query Frame = 1
Query:    1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGG--GRPPVDA-RNAALKAAERRQRQQAVMGGGT-RLGG--SLDGSRSAAERAAAAAEWRHAVSRGCAA-------------TQDGTSSQVDGGCSSHGG------DPDRHEDGAGGSEWDCGLCTLHNGSAMGACDACGTPR 687
            ++ +V+PI     W V++L EF P NPSL G+N+    +I +RLR P     F+PYE +L TMLHEL H E GPHNA FY +LDE+R ECE+LM +GI+G    F   G+ LGG   +PP+ + R AAL AAE R R  A++  G  RLGG  S+  + S  + AA AAE R      C +             T  G S +    CSS  G      D +  +DGA   +W C +CTL N S    C+ACGT R
Sbjct:   30 VAKQVQPIMRKRNWKVKVLSEFCPANPSLQGLNIGPGAEIKLRLRRPDREWDFFPYEQILDTMLHELCHNEHGPHNAQFYNLLDEIRKECEELMAKGISGTGQGFDLPGRRLGGFSRQPPLPSLRQAALAAAESRARHGALLPSGPQRLGGNSSIKSALSPVQAAAMAAERRLHDDIWCGSRSANGDTHNHDNTTLIGPSGRQGMSCSSDNGSLQSTMDRETADDGA---KWQCNICTLLNESIALECEACGTQR 281          
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Match: A0A6P5GSH7_ANACO (DNA-dependent metalloprotease WSS1 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GSH7_ANACO)

HSP 1 Score: 149 bits (377), Expect = 3.580e-37
Identity = 110/284 (38.73%), Postives = 147/284 (51.76%), Query Frame = 1
Query:    1 LSHKVKPICMAHKWNVRLLEEFIPPNPSLLGMNVNR-QKILIRLRPPSNAGAFYPYEDLLHTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGKPLGG--GRPPVDA-RNAALKAAERRQRQQAVMGGGTR-LGGSLD--GSRSAAERAAAAAEWRHAVSRGCAA-------TQDGTSSQVDGGCSSHGGDPDRHEDGAG-----GSE-----------------------------------WDCGLCTLHNGSAMGACDACGTPRP 690
            ++ +V+PI    KW V+LL EF P NPSLLG+NV    ++ +RLR P+    F+P++ +L TMLHEL H+E GPHNA FYK+ DE+R ECE+LM +GITG    F   G+ LGG   +PPV + R  AL AAE+R R  A+M  G R LGG+ D   + S  + AA AAE R      CA+         + +S  + G  SSHG      +DG G     G+E                                   W+C +CTL N      C+ACGT +P
Sbjct:   30 VAKQVEPIMRRRKWRVKLLSEFCPANPSLLGLNVGGGAEVKLRLRRPNRDWDFFPFDQVLDTMLHELCHIEHGPHNAQFYKLWDEIRKECEELMSKGITGTGQGFDAPGRRLGGFSRQPPVSSLRQTALAAAEKRARGSALMPSGPRRLGGNNDIMSALSPIQAAAMAAERRLYDDVWCASGWHDLPTVAESSSKDIGGAGSSHG-----EKDGTGKRLRTGTEGAPTGSSPDVGYRGASVSGVSSSNWTADSAEDRAMWECSVCTLLNQPLSPICEACGTAKP 308          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1110.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6X1_9PHAE3.370e-10845.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMC5_ECTSI2.930e-8439.86Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6S7MWI1_LACSI8.950e-4243.39Uncharacterized protein n=3 Tax=Lactuca TaxID=4235... [more]
A0A2U1PKA2_ARTAN9.720e-4143.65WLM-like protein n=1 Tax=Artemisia annua TaxID=356... [more]
A0A251U2C0_HELAN9.770e-4044.35Putative zinc finger, RanBP2-type, WLM domain prot... [more]
A0A835YTT9_9STRA5.270e-3953.28WLM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A4D8YQM0_SALSN6.310e-3943.03Uncharacterized protein n=3 Tax=Salvia TaxID=21880... [more]
A0A1S3Y1F5_TOBAC2.040e-3743.10DNA-dependent metalloprotease WSS1-like n=1 Tax=Ni... [more]
UPI0010A440BF2.700e-3741.96DNA-dependent metalloprotease WSS1-like n=1 Tax=Pr... [more]
A0A6P5GSH7_ANACO3.580e-3738.73DNA-dependent metalloprotease WSS1 n=2 Tax=Ananas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1110contigA-nodosum_M_contig1110:75376..78407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FMC5
PFAMsWLM,zf-RanBP
Model size1470
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010224,GO:0010225,GO:0012505,GO:0016740,GO:0016787,GO:0016925,GO:0018130,GO:0018193,GO:0018205,GO:0019438,GO:0019538,GO:0019787,GO:0019789,GO:0019985,GO:0031967,GO:0031975,GO:0032182,GO:0032183,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061659,GO:0061665,GO:0070011,GO:0070647,GO:0071704,GO:0071897,GO:0090304,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1990414,GO:1990466
Exons5
Evalue1.88e-80
EggNOG OGsKOG1558@1|root,KOG1558@2759|Eukaryota
Descriptionzinc ion transmembrane transporter activity
Cds size1443
COG categoryU
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1110.7.1prot_A-nodosum_M_contig1110.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1110 75376..78380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866503.845447-CDS-A-nodosum_M_contig1110:75375..763541680866503.845447-CDS-A-nodosum_M_contig1110:75375..76354Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1110 75376..76354 -
1680866503.923607-CDS-A-nodosum_M_contig1110:76632..767451680866503.923607-CDS-A-nodosum_M_contig1110:76632..76745Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1110 76633..76745 -
1680866503.9358046-CDS-A-nodosum_M_contig1110:77009..771011680866503.9358046-CDS-A-nodosum_M_contig1110:77009..77101Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1110 77010..77101 -
1680866503.9438958-CDS-A-nodosum_M_contig1110:77761..778991680866503.9438958-CDS-A-nodosum_M_contig1110:77761..77899Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1110 77762..77899 -
1680866503.9556956-CDS-A-nodosum_M_contig1110:78259..783801680866503.9556956-CDS-A-nodosum_M_contig1110:78259..78380Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1110 78260..78380 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866503.9678833-UTR-A-nodosum_M_contig1110:78380..784071680866503.9678833-UTR-A-nodosum_M_contig1110:78380..78407Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1110 78381..78407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1110.7.1

>prot_A-nodosum_M_contig1110.7.1 ID=prot_A-nodosum_M_contig1110.7.1|Name=mRNA_A-nodosum_M_contig1110.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=481bp
MAHKWNVRLLEEFIPPNPSLLGMNVNRQKILIRLRPPSNAGAFYPYEDLL
HTMLHELTHMEIGPHNASFYKMLDELRDECEKLMREGITGRNMPFAGHGK
PLGGGRPPVDARNAALKAAERRQRQQAVMGGGTRLGGSLDGSRSAAERAA
AAAEWRHAVSRGCAATQDGTSSQVDGGCSSHGGDPDRHEDGAGGSEWDCG
LCTLHNGSAMGACDACGTPRPASAAGASTAAAASLARARERGGGSGDVRN
VYSGEERAEEVGLAKASAMARGRTKRSDRSGAGSAPTAATVGRRRNGLPI
QSTWTCRECPFAFPNAAERRTCESCGAPRGKGSCADGRGLQGARPELSPW
ACGLCTFVNPGVFLSCRICQALRDAEGAAERNSRERQDGAAGSLVDAPVG
GETWNHPPGGADAAHVFPENVGGSSSTVGEVCSMCTLRNTAEASTCAACG
IPLAESAAAMSAPSEGSAPLGVVGVRGRRSR
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mRNA from alignment at A-nodosum_M_contig1110:75376..78407-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1110.7.1 ID=mRNA_A-nodosum_M_contig1110.7.1|Name=mRNA_A-nodosum_M_contig1110.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3032bp|location=Sequence derived from alignment at A-nodosum_M_contig1110:75376..78407- (Ascophyllum nodosum dioecious)
CTCTCTCATAAGGTGAAACCGATATGCATGGCCCACAAGTGGAACGTGAG GCTCCTGGAGGAGTTCATACCACCAAATCCGAGTCTCCTCGGCATGAACG TCAACCGCCAGAAGATTCTCATCCGCTTGCGGCCTCCCTCGAACGCCGGT GAGATACAGCACATCGAAAGGCGCTTGGATGTCCGATCAGTAAATGGGGG AGGGAGAAAGAAAAGAACAGAGAGGTCTCGACACCCCAAAAGTGCGACGG TTAGGACACAAACAACCACTTGATGAGACAACCACACAGGTGCACGAACA TACGCCGTGGCGGCGAAGCCAAGCTAGGGTATTGTAATCGACGACGCCTT CCTTAGCACACGCATGCCTCAGCGAGGAAAGTGTTTTGTGATGGTACCTA CCCTCAATCCTCGTCAAAGGCGCGTGCTCTTCCACGTCTGCTTCATGGCG ACTTGTACCTATGCTCTGTGTTTGTGTGTTTATTTCCTCGCCGCTGTCGT CGAGAAAGGCGCATTCTACCCTTACGAGGACCTCCTCCATACGATGCTCC ACGAGCTCACGCACATGGAGATCGGCCCGCACAACGCCTCGTTCTACAAG ATGCTTGACGAGCTTCGGGACGAGTGCGAAAAGCTTATGCGCGAAGGTAC TGGTTGTGTTGTCAGAGCGCTACTTCTTTTATTTGACGTTATCTCTAATT AGTGTGCTGACGATGTAGTCTGATGATAATTATAAATAATACCAAGTATT ATATATATATATATATATAGATATGTACAACTAAACTGGTGAGGATTCAC GCCAGAGTGGTACGGGATGGCAACTGTACGACATCTCGTGCGCAGGTTCA CGTTCATGACACCCGAAAACCGTCGGGGGCCCGATGGGAGGTTTTACCAC TCAAGAACCCCCCTCTCCTTTGTATCTCCCTTTAATGTGAAGGCTACGGA AGAGGGGACGGGGGGTAGGGGGGACGTTTTCAATCCCACTCTGTTTTTCC TTACAGGGGAAAAAAAAATCATGTGGTGCGGAGGGGGATTTTTCTGGGGT TAGGGTGTTATAGTGCGTACCAGGTATGTATTTCAATATTAAATTGCACA GACAAGCCTTAATTAGACGTAAAAAGTGACTGTTGAGCATCTCGTATTGG TCTCTCGATGGGAGATCGATGTTGTCGTAGCGAAAACCTCTGGTGACACG CGACAATGGAGAAACACTTCATCTGTGGTCTCTCTGTACGCCTCTAATGT CTTGTTCTTCCCTTTTTCGCTTTATTCCCGATGTTGTCTCCTCTCGCGTG GCCTAGGAATCACCGGTCGTAACATGCCGTTCGCAGGTCATGGAAAGCCG CTTGGAGGTGGCCGCCCTCCTGTTGATGCCAGGAACGCGGCGCTCAAGGT GACTCCCTCTCAGCCCCAGTCGTGACTTTAGTGCTACCTGGTATGTTTTC TCTTGTGAGGATCGCTCGCTCTCTTTCTCTCAAGTTTTGATAGAACCAAA ACGCCTGCCTCTTCATAATGTATGATCCTTCGGGAAGGTGCAGAGCTAGA GCTTTTGCTGTACTCCCTGAGTACGGTTGCGATGCGGATTGACACCTGCT TGCGAAGTGGGCGTTGGGAAATAGCCATACCGATCTGACGTCTGGTGCCC CGCCCTCTTCAGGCTGCGGAGAGGCGACAGCGACAGCAGGCTGTCATGGG AGGTGGGACACGACTGGGTGGCTCTTTGGATGGGTCCAGATCCGCAGCGG AGCGTGCCGCGGCCGCAGCCGAATGGTGGGTTTCGCCCTGTCGCGCGAAG ATGCGTTCAGTATTTTACTGTTCGTGCCTTCGCTCCAGTGCACATGCTAA GGTCGAGGTACTGTGTAAGTGCCTTAGCTTTTTACTGTCGAGGCACTGAT AGACCGTCGACGAGACTAATGCGCTTAACGAGAGGCAAATATGTTGCACG TCTAACGCGCTTCCTTTTCGATACAACTTTTCAAAATATACGATATACAA ATTGTTTGTGTGTGCCTATTACGGCGCTGGCCTATTGTTTCGAACAAGCA CAGGAGGCACGCCGTCAGCAGGGGTTGCGCGGCTACTCAAGACGGCACGA GCTCACAGGTTGACGGCGGGTGCAGCTCTCACGGAGGCGACCCAGATCGA CACGAGGACGGGGCTGGTGGGAGTGAATGGGACTGCGGCCTGTGCACCCT CCACAACGGCTCCGCGATGGGCGCGTGCGACGCTTGCGGAACGCCGCGTC CTGCCTCCGCCGCTGGTGCTTCTACTGCTGCTGCTGCTTCGCTTGCGCGG GCAAGGGAGCGCGGCGGCGGTTCTGGTGACGTCAGGAATGTTTATAGCGG CGAGGAACGGGCCGAGGAAGTGGGTTTGGCGAAGGCCTCAGCAATGGCGC GTGGAAGGACGAAGCGTTCCGATCGTTCTGGGGCCGGTTCCGCTCCTACG GCCGCGACCGTCGGCAGACGCAGAAATGGGCTGCCAATTCAGAGCACTTG GACTTGTCGTGAATGCCCCTTCGCATTCCCCAACGCTGCAGAAAGGCGAA CTTGCGAGTCGTGCGGGGCACCGCGAGGCAAGGGATCTTGTGCCGACGGG CGTGGATTGCAGGGCGCTCGGCCAGAGCTCTCCCCGTGGGCATGCGGCTT GTGCACCTTCGTGAACCCGGGAGTATTCCTCTCGTGCAGGATTTGCCAGG CGCTCCGAGATGCTGAAGGTGCGGCGGAGAGGAATTCGCGAGAAAGACAA GACGGGGCTGCAGGTAGCCTCGTAGATGCCCCCGTCGGTGGGGAAACGTG GAACCACCCTCCCGGAGGTGCGGATGCCGCACATGTCTTCCCAGAGAACG TCGGTGGATCGTCGTCGACGGTCGGTGAAGTGTGCAGCATGTGCACCCTA CGGAACACCGCGGAGGCGTCTACTTGCGCGGCGTGCGGAATCCCTTTGGC TGAAAGCGCCGCAGCGATGAGCGCTCCATCTGAAGGGTCTGCACCCCTTG GTGTGGTTGGTGTGCGGGGCAGACGATCGAGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1110:75376..78407-

>mRNA_A-nodosum_M_contig1110.7.1 ID=mRNA_A-nodosum_M_contig1110.7.1|Name=mRNA_A-nodosum_M_contig1110.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1443bp|location=Sequence derived from alignment at A-nodosum_M_contig1110:75376..78407- (Ascophyllum nodosum dioecious)
ATGGCCCACAAGTGGAACGTGAGGCTCCTGGAGGAGTTCATACCACCAAA
TCCGAGTCTCCTCGGCATGAACGTCAACCGCCAGAAGATTCTCATCCGCT
TGCGGCCTCCCTCGAACGCCGGCGCATTCTACCCTTACGAGGACCTCCTC
CATACGATGCTCCACGAGCTCACGCACATGGAGATCGGCCCGCACAACGC
CTCGTTCTACAAGATGCTTGACGAGCTTCGGGACGAGTGCGAAAAGCTTA
TGCGCGAAGGAATCACCGGTCGTAACATGCCGTTCGCAGGTCATGGAAAG
CCGCTTGGAGGTGGCCGCCCTCCTGTTGATGCCAGGAACGCGGCGCTCAA
GGCTGCGGAGAGGCGACAGCGACAGCAGGCTGTCATGGGAGGTGGGACAC
GACTGGGTGGCTCTTTGGATGGGTCCAGATCCGCAGCGGAGCGTGCCGCG
GCCGCAGCCGAATGGAGGCACGCCGTCAGCAGGGGTTGCGCGGCTACTCA
AGACGGCACGAGCTCACAGGTTGACGGCGGGTGCAGCTCTCACGGAGGCG
ACCCAGATCGACACGAGGACGGGGCTGGTGGGAGTGAATGGGACTGCGGC
CTGTGCACCCTCCACAACGGCTCCGCGATGGGCGCGTGCGACGCTTGCGG
AACGCCGCGTCCTGCCTCCGCCGCTGGTGCTTCTACTGCTGCTGCTGCTT
CGCTTGCGCGGGCAAGGGAGCGCGGCGGCGGTTCTGGTGACGTCAGGAAT
GTTTATAGCGGCGAGGAACGGGCCGAGGAAGTGGGTTTGGCGAAGGCCTC
AGCAATGGCGCGTGGAAGGACGAAGCGTTCCGATCGTTCTGGGGCCGGTT
CCGCTCCTACGGCCGCGACCGTCGGCAGACGCAGAAATGGGCTGCCAATT
CAGAGCACTTGGACTTGTCGTGAATGCCCCTTCGCATTCCCCAACGCTGC
AGAAAGGCGAACTTGCGAGTCGTGCGGGGCACCGCGAGGCAAGGGATCTT
GTGCCGACGGGCGTGGATTGCAGGGCGCTCGGCCAGAGCTCTCCCCGTGG
GCATGCGGCTTGTGCACCTTCGTGAACCCGGGAGTATTCCTCTCGTGCAG
GATTTGCCAGGCGCTCCGAGATGCTGAAGGTGCGGCGGAGAGGAATTCGC
GAGAAAGACAAGACGGGGCTGCAGGTAGCCTCGTAGATGCCCCCGTCGGT
GGGGAAACGTGGAACCACCCTCCCGGAGGTGCGGATGCCGCACATGTCTT
CCCAGAGAACGTCGGTGGATCGTCGTCGACGGTCGGTGAAGTGTGCAGCA
TGTGCACCCTACGGAACACCGCGGAGGCGTCTACTTGCGCGGCGTGCGGA
ATCCCTTTGGCTGAAAGCGCCGCAGCGATGAGCGCTCCATCTGAAGGGTC
TGCACCCCTTGGTGTGGTTGGTGTGCGGGGCAGACGATCGAGA
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