mRNA_A-nodosum_M_contig111.44.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig111.44.1
Unique NamemRNA_A-nodosum_M_contig111.44.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig111.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig111contigA-nodosum_M_contig111:782284..782819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size536
Hectar predicted targeting categorysignal anchor
Exons1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866499.973993-CDS-A-nodosum_M_contig111:782283..7826431680866499.973993-CDS-A-nodosum_M_contig111:782283..782643Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig111 782284..782643 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866499.9828815-UTR-A-nodosum_M_contig111:782643..7828191680866499.9828815-UTR-A-nodosum_M_contig111:782643..782819Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig111 782644..782819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig111.44.1prot_A-nodosum_M_contig111.44.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig111 782284..782643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig111.44.1

>prot_A-nodosum_M_contig111.44.1 ID=prot_A-nodosum_M_contig111.44.1|Name=mRNA_A-nodosum_M_contig111.44.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=120bp
MREATALLRHNGCPRRDQSDAEIPEVQDDGDPVLRASKQCNQCGGKKSRS
RSGSSYLAVGLVAFIVLGYLSAFDTTHQLQEEHREHRQSSQEREKQVEGL
LAAGQRDGEGAEVGESHARD
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mRNA from alignment at A-nodosum_M_contig111:782284..782819-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig111.44.1 ID=mRNA_A-nodosum_M_contig111.44.1|Name=mRNA_A-nodosum_M_contig111.44.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=536bp|location=Sequence derived from alignment at A-nodosum_M_contig111:782284..782819- (Ascophyllum nodosum dioecious)
GGTGTGAGCTGTGACCACCGGCCCCGTCACTACTTTATTTGGAGAGCCAT
CTGACTGGTGGTGCTACTTGCGCTGCTGTTCAGTATTATTGTGCGTGACG
ATCGCAGTTCTACAGATAGATACAACAGTATTATAGTGGTACGGCGTACC
GCCGTACACCCTTTAGAGGGGAGGAGATGCGGGAAGCAACAGCGCTCCTC
CGACACAACGGATGCCCCAGGAGGGACCAGAGCGACGCTGAGATACCAGA
GGTTCAGGACGATGGGGACCCGGTTCTCCGAGCAAGCAAGCAGTGCAATC
AATGCGGTGGCAAGAAATCTCGAAGCCGGTCGGGCTCGAGCTACCTTGCG
GTGGGGCTTGTTGCATTCATCGTGTTGGGTTACCTCTCGGCCTTTGACAC
GACTCACCAGCTGCAAGAGGAGCATCGAGAGCATCGGCAGTCGTCGCAGG
AGCGGGAGAAACAGGTGGAGGGCTTACTGGCCGCCGGCCAAAGAGATGGT
GAAGGTGCTGAGGTGGGCGAGAGTCACGCAAGGGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig111:782284..782819-

>mRNA_A-nodosum_M_contig111.44.1 ID=mRNA_A-nodosum_M_contig111.44.1|Name=mRNA_A-nodosum_M_contig111.44.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at A-nodosum_M_contig111:782284..782819- (Ascophyllum nodosum dioecious)
ATGCGGGAAGCAACAGCGCTCCTCCGACACAACGGATGCCCCAGGAGGGA
CCAGAGCGACGCTGAGATACCAGAGGTTCAGGACGATGGGGACCCGGTTC
TCCGAGCAAGCAAGCAGTGCAATCAATGCGGTGGCAAGAAATCTCGAAGC
CGGTCGGGCTCGAGCTACCTTGCGGTGGGGCTTGTTGCATTCATCGTGTT
GGGTTACCTCTCGGCCTTTGACACGACTCACCAGCTGCAAGAGGAGCATC
GAGAGCATCGGCAGTCGTCGCAGGAGCGGGAGAAACAGGTGGAGGGCTTA
CTGGCCGCCGGCCAAAGAGATGGTGAAGGTGCTGAGGTGGGCGAGAGTCA
CGCAAGGGAC
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