mRNA_A-nodosum_M_contig1109.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1109.8.1
Unique NamemRNA_A-nodosum_M_contig1109.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1109.8.1 vs. uniprot
Match: A0A6H5LMC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMC8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.570e-12
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 3 
Query:   24 PSGFCCFWCCEPLADFCFCIRRTICCVLTCGLAECFCPXXXXXXXXXPHGAPLI 185
            P G CC  CC P+ D CFC+RRT CC++TCGLAECFCP         PHG PLI
Sbjct:   38 PLGLCC--CCGPIHDLCFCLRRTFCCIITCGLAECFCPRRPPGG---PHGQPLI 86
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1109.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LMC8_9PHAE2.570e-1259.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1109contigA-nodosum_M_contig1109:20660..21277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size618
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866499.0773878-UTR-A-nodosum_M_contig1109:20659..209591680866499.0773878-UTR-A-nodosum_M_contig1109:20659..20959Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1109 20660..20959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866499.0879843-CDS-A-nodosum_M_contig1109:20959..212771680866499.0879843-CDS-A-nodosum_M_contig1109:20959..21277Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1109 20960..21277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1109.8.1prot_A-nodosum_M_contig1109.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1109 20960..21277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1109.8.1

>prot_A-nodosum_M_contig1109.8.1 ID=prot_A-nodosum_M_contig1109.8.1|Name=mRNA_A-nodosum_M_contig1109.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=106bp
MDIRLRPPRQAFAASGVASHLRTFVFALGVPSVASSPAGLRSASAPLPRL
TEEADPTAPRSSRNLGRNSPQSASSLESPLQPKRCVEVPLFCCQRRVPLH
LTCVG*
back to top

mRNA from alignment at A-nodosum_M_contig1109:20660..21277-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1109.8.1 ID=mRNA_A-nodosum_M_contig1109.8.1|Name=mRNA_A-nodosum_M_contig1109.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=618bp|location=Sequence derived from alignment at A-nodosum_M_contig1109:20660..21277- (Ascophyllum nodosum dioecious)
ATGGATATACGTCTACGTCCGCCCCGTCAGGCTTTTGCTGCTTCTGGTGT
TGCGAGCCACTTGCGGACTTTTGTTTTTGCATTAGGCGTACCATCTGTTG
CGTCCTCACCTGCGGGCTTGCGGAGTGCTTCTGCCCCCCTCCCCCGCCTC
ACGGAGGAGGCGGACCCCACGGCGCCCCGCTCATCTAGGAATCTAGGGAG
GAACAGCCCCCAAAGTGCGTCGAGCCTTGAATCCCCGCTCCAACCGAAGC
GATGCGTAGAGGTGCCACTTTTTTGCTGCCAGCGAAGGGTCCCTCTCCAT
TTGACTTGTGTCGGTTAAGTAGAGCGCGAGGTGGCGCGAAGGAATCCAAT
CGCAGCCCAGCACCATGGCGCCGTGTGACCGGAGCGGGAGCGATTCGTCA
CTGTTTACGAGACCCATATTTTTCGTGTACAATTTCGTGTCGCTCTTGTG
TCATCGATTGATCATCTTACGTGTACTCACCTCGCGGCTTTTTCATTTGT
TTTATGGGTCGTTTTGGTCTTAATTTCGTCTTCGTAGCTGATAATAGCCT
GTATGTTTCACGCCGCTGAGTTAGTGATGAGGGCAGCGCTTCTAAATGTT
CCAGCGGCTCCCACGTCT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1109:20660..21277-

>mRNA_A-nodosum_M_contig1109.8.1 ID=mRNA_A-nodosum_M_contig1109.8.1|Name=mRNA_A-nodosum_M_contig1109.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at A-nodosum_M_contig1109:20660..21277- (Ascophyllum nodosum dioecious)
ATGGATATACGTCTACGTCCGCCCCGTCAGGCTTTTGCTGCTTCTGGTGT
TGCGAGCCACTTGCGGACTTTTGTTTTTGCATTAGGCGTACCATCTGTTG
CGTCCTCACCTGCGGGCTTGCGGAGTGCTTCTGCCCCCCTCCCCCGCCTC
ACGGAGGAGGCGGACCCCACGGCGCCCCGCTCATCTAGGAATCTAGGGAG
GAACAGCCCCCAAAGTGCGTCGAGCCTTGAATCCCCGCTCCAACCGAAGC
GATGCGTAGAGGTGCCACTTTTTTGCTGCCAGCGAAGGGTCCCTCTCCAT
TTGACTTGTGTCGGTTAA
back to top