mRNA_A-nodosum_M_contig1109.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1109.16.1
Unique NamemRNA_A-nodosum_M_contig1109.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1109.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1109contigA-nodosum_M_contig1109:181905..182431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size527
Hectar predicted targeting categorysignal peptide
Exons1
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866499.1238706-UTR-A-nodosum_M_contig1109:181904..1819961680866499.1238706-UTR-A-nodosum_M_contig1109:181904..181996Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1109 181905..181996 -
1680866499.1400857-UTR-A-nodosum_M_contig1109:182407..1824311680866499.1400857-UTR-A-nodosum_M_contig1109:182407..182431Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1109 182408..182431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866499.1322992-CDS-A-nodosum_M_contig1109:181996..1824071680866499.1322992-CDS-A-nodosum_M_contig1109:181996..182407Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1109 181997..182407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1109.16.1prot_A-nodosum_M_contig1109.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1109 181997..182407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1109.16.1

>prot_A-nodosum_M_contig1109.16.1 ID=prot_A-nodosum_M_contig1109.16.1|Name=mRNA_A-nodosum_M_contig1109.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=137bp
MWHTLAKASIAVLSMSVSMSMSMSASKDCVYNDVNANNCQCPCQGQLRCR
CQYQCRRRQYQCNEVNVDVLCHSERFKQRDQCPRAEVTRCINSKYEYRRL
GYWPLKIRRSRFAHQTWGSQHPVMKYIQRKLYIRIC*
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mRNA from alignment at A-nodosum_M_contig1109:181905..182431-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1109.16.1 ID=mRNA_A-nodosum_M_contig1109.16.1|Name=mRNA_A-nodosum_M_contig1109.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=527bp|location=Sequence derived from alignment at A-nodosum_M_contig1109:181905..182431- (Ascophyllum nodosum dioecious)
GTTGTGGCCAACGTCCCCGCGCAGATGTGGCACACTCTAGCAAAGGCGAG
TATTGCCGTTTTGTCAATGTCGGTGTCGATGTCGATGTCAATGTCGGCGT
CAAAAGACTGTGTATATAACGATGTCAATGCCAATAACTGTCAATGTCCA
TGTCAAGGTCAATTACGATGCCGATGTCAATATCAATGTCGTCGACGTCA
ATATCAGTGTAACGAAGTCAATGTCGATGTCCTTTGTCACAGTGAACGAT
TCAAACAACGTGACCAATGTCCCCGCGCAGAGGTGACACGCTGTATTAAT
AGCAAATACGAGTATCGCCGTTTGGGGTATTGGCCGTTAAAAATACGTCG
ATCGAGATTCGCCCACCAGACTTGGGGTTCCCAACATCCAGTTATGAAAT
ATATACAGAGAAAGCTATATATACGAATTTGTTAACTCGACCCCAAAAAC
AAAAGTTGACCGTTGCGAAGAGAGTGGTTTTTGCTGTCCGTTTGGGTCAG
AAGCCACCCCAACTGGAGAACAACACG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1109:181905..182431-

>mRNA_A-nodosum_M_contig1109.16.1 ID=mRNA_A-nodosum_M_contig1109.16.1|Name=mRNA_A-nodosum_M_contig1109.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=411bp|location=Sequence derived from alignment at A-nodosum_M_contig1109:181905..182431- (Ascophyllum nodosum dioecious)
ATGTGGCACACTCTAGCAAAGGCGAGTATTGCCGTTTTGTCAATGTCGGT
GTCGATGTCGATGTCAATGTCGGCGTCAAAAGACTGTGTATATAACGATG
TCAATGCCAATAACTGTCAATGTCCATGTCAAGGTCAATTACGATGCCGA
TGTCAATATCAATGTCGTCGACGTCAATATCAGTGTAACGAAGTCAATGT
CGATGTCCTTTGTCACAGTGAACGATTCAAACAACGTGACCAATGTCCCC
GCGCAGAGGTGACACGCTGTATTAATAGCAAATACGAGTATCGCCGTTTG
GGGTATTGGCCGTTAAAAATACGTCGATCGAGATTCGCCCACCAGACTTG
GGGTTCCCAACATCCAGTTATGAAATATATACAGAGAAAGCTATATATAC
GAATTTGTTAA
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