mRNA_A-nodosum_M_contig1109.10.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE) HSP 1 Score: 300 bits (769), Expect = 1.200e-97 Identity = 151/248 (60.89%), Postives = 183/248 (73.79%), Query Frame = 2
Query: 149 RRDILPLLKVEEKL--TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFKPR----TKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
R+DILPLLK + K DTA Y +ANED+YA L+LL+E PAAL Q ED++ ISGDGQAAF++LC NYD+VTDEVIR MEEL N P PG+NPD+Y N+K LL +++KMGE +SDR FKDICV GF+D+YKDVK+M++RD +F++ MQ+TMR++FLD+QSR G KGRIA RG M T S D+ C C E GH +RNCPK K R TKP GATK CS H TTSHSDEECY QG RP
Sbjct: 55 RKDILPLLKKQRKPDHADTAAFDSYTRANEDLYASLFLLMEPPAALSIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTAS---DIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRP 299
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE) HSP 1 Score: 302 bits (773), Expect = 2.710e-94 Identity = 152/248 (61.29%), Postives = 183/248 (73.79%), Query Frame = 2
Query: 149 RRDILPLLKVEEKL--TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFKPR----TKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
R+DILPLLK + K DTA Y +ANED+YA+L+L VELPAAL Q ED++ ISGDGQAAF++LC NYD+VTDEVIR MEEL N P PG+NPDDY N+K LL +++KMGE +SDR FKDICV GF+D+YKDVK+M++RD +F++ M +TMR++FLD+QSR G KGRIA RG M T S D+ C C E GH +RNCPK K R TKP GATK CS H TTSHSDEECY QG RP
Sbjct: 73 RKDILPLLKEQRKPDPADTAAFGSYARANEDLYAILFLQVELPAALSIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMATTAS---DIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRP 317
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE) HSP 1 Score: 304 bits (778), Expect = 6.020e-94 Identity = 159/249 (63.86%), Postives = 186/249 (74.70%), Query Frame = 2
Query: 149 RRDILPLLKVEEKLTDTAK-IADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCP----KFKPRTKPDGATKGCSVHRTTSHSDEECYSQGATRPNK 880
RRDILPLLK + +T A Y K+NED+YA+LY LVELPA+L Q ED+S+ISGDGQAAF++L NY+KVTDEVIR TMEEL+NTP EP QNPDDY N+K LL + EKMGE +SD +F D CVTGFT++YKDVKM+MYRD F++D+MQTTMRHMFLD+QSRNG KG IA RG MT +T + CF C E GH RNC K K +TKP GA K CSVH TT HSDEEC+ QGATRP K
Sbjct: 34 RRDILPLLKGRSRPAETDDDYAAYCKSNEDLYAILYRLVELPASLSVQKHEDDSKISGDGQAAFQELNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTA--TTSEEPTCFDCGEKGHIWRNCSEKRGKGKKKTKPAGAAKWCSVHFTTRHSDEECFEQGATRPKK 280
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5KMR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR7_9PHAE) HSP 1 Score: 276 bits (705), Expect = 9.980e-88 Identity = 143/250 (57.20%), Postives = 177/250 (70.80%), Query Frame = 2
Query: 149 RRDILPLLKVEEKL--TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFK------PRTKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
RRDI+PLLK K +DT A Y +ANED+YA+L+ LVELPAAL ED++ +SGDGQAAF +L NY++VTDEVI + +L T EPG+NPDD+ NKK L ++EKMGE +SDR FKDICV GF++ YK +KMM++RD SFD+ QMQ TMR++FLD+Q R TKG+IA RG M TK S CF C E GH +RNCP + +TKP GATK CSVH TT+HSDEECY+QGA RP
Sbjct: 54 RRDIMPLLKGMRKPDPSDTT-FAAYERANEDLYAILFCLVELPAALTVHKQEDDTGLSGDGQAAFTELKANYNRVTDEVISAKLNDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKFIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS---GPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRP 299
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE) HSP 1 Score: 292 bits (747), Expect = 1.410e-87 Identity = 151/248 (60.89%), Postives = 179/248 (72.18%), Query Frame = 2
Query: 149 RRDILPLLKVEEKL--TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFKPR----TKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
R DILPLLK + K DTA Y +ANED+YA+L+LLVELPAAL Q ED++ ISGDGQAAF++LC NYD+VTDEVIR MEEL N P PG+NPDDY N+K LL +++KMGE SDR KDI V GF+D+YKDVK+M +RD +F++ MQ+TMR++FLD+QS KGRIA RG M T S D+ C RC E GH +RNCPK K R TKP GATK CS H TTSHSDEECY QG RP
Sbjct: 66 RNDILPLLKKQRKPDPADTAAFDSYTRANEDLYAILFLLVELPAALSIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPNSDRRVKDIFVQGFSDEYKDVKVMAFRDPTFNVLDMQSTMRNIFLDEQSCKRWKGRIAGRGFAMATTAS---DIICHRCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRP 310
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE) HSP 1 Score: 281 bits (718), Expect = 8.180e-87 Identity = 144/250 (57.60%), Postives = 180/250 (72.00%), Query Frame = 2
Query: 149 RRDILPLLKVEEKL--TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFK------PRTKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
RRDI+PLLK + +DT A Y +ANED+YA+L+ LVELPAAL ED++ +SGDGQAAF +L NY++VTDEVIR +++L T EPG+NPDD+ NKK L ++EKMGE +SDR FKDICV GF++ YKD+KMM++RD SFD+ QMQ TMR++FLD+Q R TKG+IA RG M TK S CF C E GH +RNCP + +TKP GATK CSVH TT+HSDEECY+QGA RP
Sbjct: 54 RRDIMPLLKGMRRPDPSDTT-FAAYERANEDLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS---GPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRP 299
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5K7P0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P0_9PHAE) HSP 1 Score: 272 bits (696), Expect = 1.240e-86 Identity = 140/250 (56.00%), Postives = 178/250 (71.20%), Query Frame = 2
Query: 149 RRDILPLLKVEEKL--TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFK------PRTKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
RRDI+PLLK + +DT A Y +ANED+YA+L+ LVELPAAL ED++ +SGDGQAAF +L NY++VTDEVIR +++L T EPG+NPDD+ NKK L ++EKMGE +SDR FKDICV GF++ YKD+KMM++RD SF++ QMQ T+R++FLD++ R TKG IA R M TK S CF C E GH +RNCP + +TKP GATK CSVH TT+HSDEECY+QGA RP
Sbjct: 54 RRDIMPLLKGMRRPDPSDTT-FAAYERANEDLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFEVQQMQATVRNIFLDERMRKRTKGEIAGRVFAMATKTS---GPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRP 299
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE) HSP 1 Score: 281 bits (718), Expect = 8.800e-86 Identity = 144/250 (57.60%), Postives = 180/250 (72.00%), Query Frame = 2
Query: 149 RRDILPLLKVEEKL--TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFK------PRTKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
RRDI+PLLK + +DT A Y +ANED+YA+L+ LVELPAAL ED++ +SGDGQAAF +L NY++VTDEVIR +++L T EPG+NPDD+ NKK L ++EKMGE +SDR FKDICV GF++ YKD+KMM++RD SFD+ QMQ TMR++FLD+Q R TKG+IA RG M TK S CF C E GH +RNCP + +TKP GATK CSVH TT+HSDEECY+QGA RP
Sbjct: 54 RRDIMPLLKGMRRPDPSDTT-FAAYERANEDLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS---GPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRP 299
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE) HSP 1 Score: 270 bits (691), Expect = 1.140e-85 Identity = 144/262 (54.96%), Postives = 182/262 (69.47%), Query Frame = 2
Query: 113 LDEEVLCRHWRPRRDILPLLKVEEKL---TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHM-FLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFKPR----TKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
+DEE+L R R + P+ E++ DTA Y +ANED+YA+L+LLVELPAAL Q ED++ ISGDGQAAF++LC NYD+VTDEVIR MEEL N P PG+NPDDY N+K L+ +++KMGE +SDR KDI V GF+D+Y+DVK+M++RD +F+ MQ+T+R+ + ++QSR G KGRIA RG M T S D+ C C E GH +RNCPK K R TKP GATK C H TTSHSDEECY QG RP
Sbjct: 1 MDEEIL-RGVRSDQKGHPVTAKEKRKPDPADTAAFDSYTRANEDLYAILFLLVELPAALSIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLIRAQLDKMGEPISDRRCKDIWVQGFSDEYRDVKLMVFRDPTFNALGMQSTIRNTSWTNEQSRKGWKGRIAGRGFAMATTAS---DIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCCKHNTTSHSDEECYQQGGKRP 258
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE) HSP 1 Score: 281 bits (719), Expect = 1.150e-83 Identity = 142/249 (57.03%), Postives = 177/249 (71.08%), Query Frame = 2
Query: 149 RRDILPLLK-VEEKLTDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFK------PRTKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
RRDI+PLLK + A Y +ANED+YA+L+ LVELPAAL ED++ +SGDGQAAF +L NY++VTDEVIR +++L T EPG+NPDD+ NKK L ++EKMGE +SDR FKDICV GF++ YKD+KMM++RD SFD+ QMQ TMR++FLD+Q R TKG+IA RG M TK S CF C E GH +RNCP + +TKP GATK CSVH TT+HSDEECY+QGA RP
Sbjct: 54 RRDIMPLLKGMRRPDPSDTNFAAYERANEDLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS---GPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRP 299 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1109.10.1 >prot_A-nodosum_M_contig1109.10.1 ID=prot_A-nodosum_M_contig1109.10.1|Name=mRNA_A-nodosum_M_contig1109.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=214bp MLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMback to top mRNA from alignment at A-nodosum_M_contig1109:47993..48878- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1109.10.1 ID=mRNA_A-nodosum_M_contig1109.10.1|Name=mRNA_A-nodosum_M_contig1109.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=886bp|location=Sequence derived from alignment at A-nodosum_M_contig1109:47993..48878- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1109:47993..48878- >mRNA_A-nodosum_M_contig1109.10.1 ID=mRNA_A-nodosum_M_contig1109.10.1|Name=mRNA_A-nodosum_M_contig1109.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at A-nodosum_M_contig1109:47993..48878- (Ascophyllum nodosum dioecious)back to top |