mRNA_A-nodosum_M_contig1109.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1109.10.1
Unique NamemRNA_A-nodosum_M_contig1109.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 1.200e-97
Identity = 151/248 (60.89%), Postives = 183/248 (73.79%), Query Frame = 2
Query:  149 RRDILPLLKVEEKL--TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFKPR----TKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
            R+DILPLLK + K    DTA    Y +ANED+YA L+LL+E PAAL  Q  ED++ ISGDGQAAF++LC NYD+VTDEVIR  MEEL N P  PG+NPD+Y N+K LL  +++KMGE +SDR FKDICV GF+D+YKDVK+M++RD +F++  MQ+TMR++FLD+QSR G KGRIA RG  M T  S   D+ C  C E GH +RNCPK K R    TKP GATK CS H TTSHSDEECY QG  RP
Sbjct:   55 RKDILPLLKKQRKPDHADTAAFDSYTRANEDLYASLFLLMEPPAALSIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDEQSRKGWKGRIAGRGFAMATTAS---DIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRP 299          
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 2.710e-94
Identity = 152/248 (61.29%), Postives = 183/248 (73.79%), Query Frame = 2
Query:  149 RRDILPLLKVEEKL--TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFKPR----TKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
            R+DILPLLK + K    DTA    Y +ANED+YA+L+L VELPAAL  Q  ED++ ISGDGQAAF++LC NYD+VTDEVIR  MEEL N P  PG+NPDDY N+K LL  +++KMGE +SDR FKDICV GF+D+YKDVK+M++RD +F++  M +TMR++FLD+QSR G KGRIA RG  M T  S   D+ C  C E GH +RNCPK K R    TKP GATK CS H TTSHSDEECY QG  RP
Sbjct:   73 RKDILPLLKEQRKPDPADTAAFGSYARANEDLYAILFLQVELPAALSIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMATTAS---DIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRP 317          
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 6.020e-94
Identity = 159/249 (63.86%), Postives = 186/249 (74.70%), Query Frame = 2
Query:  149 RRDILPLLKVEEKLTDTAK-IADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCP----KFKPRTKPDGATKGCSVHRTTSHSDEECYSQGATRPNK 880
            RRDILPLLK   +  +T    A Y K+NED+YA+LY LVELPA+L  Q  ED+S+ISGDGQAAF++L  NY+KVTDEVIR TMEEL+NTP EP QNPDDY N+K LL  + EKMGE +SD +F D CVTGFT++YKDVKM+MYRD  F++D+MQTTMRHMFLD+QSRNG KG IA RG  MT   +T  +  CF C E GH  RNC     K K +TKP GA K CSVH TT HSDEEC+ QGATRP K
Sbjct:   34 RRDILPLLKGRSRPAETDDDYAAYCKSNEDLYAILYRLVELPASLSVQKHEDDSKISGDGQAAFQELNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTA--TTSEEPTCFDCGEKGHIWRNCSEKRGKGKKKTKPAGAAKWCSVHFTTRHSDEECFEQGATRPKK 280          
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5KMR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR7_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 9.980e-88
Identity = 143/250 (57.20%), Postives = 177/250 (70.80%), Query Frame = 2
Query:  149 RRDILPLLKVEEKL--TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFK------PRTKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
            RRDI+PLLK   K   +DT   A Y +ANED+YA+L+ LVELPAAL     ED++ +SGDGQAAF +L  NY++VTDEVI   + +L  T  EPG+NPDD+ NKK  L  ++EKMGE +SDR FKDICV GF++ YK +KMM++RD SFD+ QMQ TMR++FLD+Q R  TKG+IA RG  M TK S      CF C E GH +RNCP  +       +TKP GATK CSVH TT+HSDEECY+QGA RP
Sbjct:   54 RRDIMPLLKGMRKPDPSDTT-FAAYERANEDLYAILFCLVELPAALTVHKQEDDTGLSGDGQAAFTELKANYNRVTDEVISAKLNDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKFIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS---GPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRP 299          
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 1.410e-87
Identity = 151/248 (60.89%), Postives = 179/248 (72.18%), Query Frame = 2
Query:  149 RRDILPLLKVEEKL--TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFKPR----TKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
            R DILPLLK + K    DTA    Y +ANED+YA+L+LLVELPAAL  Q  ED++ ISGDGQAAF++LC NYD+VTDEVIR  MEEL N P  PG+NPDDY N+K LL  +++KMGE  SDR  KDI V GF+D+YKDVK+M +RD +F++  MQ+TMR++FLD+QS    KGRIA RG  M T  S   D+ C RC E GH +RNCPK K R    TKP GATK CS H TTSHSDEECY QG  RP
Sbjct:   66 RNDILPLLKKQRKPDPADTAAFDSYTRANEDLYAILFLLVELPAALSIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPNSDRRVKDIFVQGFSDEYKDVKVMAFRDPTFNVLDMQSTMRNIFLDEQSCKRWKGRIAGRGFAMATTAS---DIICHRCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRP 310          
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 8.180e-87
Identity = 144/250 (57.60%), Postives = 180/250 (72.00%), Query Frame = 2
Query:  149 RRDILPLLKVEEKL--TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFK------PRTKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
            RRDI+PLLK   +   +DT   A Y +ANED+YA+L+ LVELPAAL     ED++ +SGDGQAAF +L  NY++VTDEVIR  +++L  T  EPG+NPDD+ NKK  L  ++EKMGE +SDR FKDICV GF++ YKD+KMM++RD SFD+ QMQ TMR++FLD+Q R  TKG+IA RG  M TK S      CF C E GH +RNCP  +       +TKP GATK CSVH TT+HSDEECY+QGA RP
Sbjct:   54 RRDIMPLLKGMRRPDPSDTT-FAAYERANEDLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS---GPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRP 299          
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5K7P0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P0_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 1.240e-86
Identity = 140/250 (56.00%), Postives = 178/250 (71.20%), Query Frame = 2
Query:  149 RRDILPLLKVEEKL--TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFK------PRTKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
            RRDI+PLLK   +   +DT   A Y +ANED+YA+L+ LVELPAAL     ED++ +SGDGQAAF +L  NY++VTDEVIR  +++L  T  EPG+NPDD+ NKK  L  ++EKMGE +SDR FKDICV GF++ YKD+KMM++RD SF++ QMQ T+R++FLD++ R  TKG IA R   M TK S      CF C E GH +RNCP  +       +TKP GATK CSVH TT+HSDEECY+QGA RP
Sbjct:   54 RRDIMPLLKGMRRPDPSDTT-FAAYERANEDLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFEVQQMQATVRNIFLDERMRKRTKGEIAGRVFAMATKTS---GPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRP 299          
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 8.800e-86
Identity = 144/250 (57.60%), Postives = 180/250 (72.00%), Query Frame = 2
Query:  149 RRDILPLLKVEEKL--TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFK------PRTKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
            RRDI+PLLK   +   +DT   A Y +ANED+YA+L+ LVELPAAL     ED++ +SGDGQAAF +L  NY++VTDEVIR  +++L  T  EPG+NPDD+ NKK  L  ++EKMGE +SDR FKDICV GF++ YKD+KMM++RD SFD+ QMQ TMR++FLD+Q R  TKG+IA RG  M TK S      CF C E GH +RNCP  +       +TKP GATK CSVH TT+HSDEECY+QGA RP
Sbjct:   54 RRDIMPLLKGMRRPDPSDTT-FAAYERANEDLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS---GPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRP 299          
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 1.140e-85
Identity = 144/262 (54.96%), Postives = 182/262 (69.47%), Query Frame = 2
Query:  113 LDEEVLCRHWRPRRDILPLLKVEEKL---TDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHM-FLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFKPR----TKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
            +DEE+L R  R  +   P+   E++     DTA    Y +ANED+YA+L+LLVELPAAL  Q  ED++ ISGDGQAAF++LC NYD+VTDEVIR  MEEL N P  PG+NPDDY N+K L+  +++KMGE +SDR  KDI V GF+D+Y+DVK+M++RD +F+   MQ+T+R+  + ++QSR G KGRIA RG  M T  S   D+ C  C E GH +RNCPK K R    TKP GATK C  H TTSHSDEECY QG  RP
Sbjct:    1 MDEEIL-RGVRSDQKGHPVTAKEKRKPDPADTAAFDSYTRANEDLYAILFLLVELPAALSIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLIRAQLDKMGEPISDRRCKDIWVQGFSDEYRDVKLMVFRDPTFNALGMQSTIRNTSWTNEQSRKGWKGRIAGRGFAMATTAS---DIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCCKHNTTSHSDEECYQQGGKRP 258          
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 1.150e-83
Identity = 142/249 (57.03%), Postives = 177/249 (71.08%), Query Frame = 2
Query:  149 RRDILPLLK-VEEKLTDTAKIADYNKANEDIYAMLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTMEELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTDKYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTTKISTDHDVYCFRCKECGHTKRNCPKFK------PRTKPDGATKGCSVHRTTSHSDEECYSQGATRP 874
            RRDI+PLLK +          A Y +ANED+YA+L+ LVELPAAL     ED++ +SGDGQAAF +L  NY++VTDEVIR  +++L  T  EPG+NPDD+ NKK  L  ++EKMGE +SDR FKDICV GF++ YKD+KMM++RD SFD+ QMQ TMR++FLD+Q R  TKG+IA RG  M TK S      CF C E GH +RNCP  +       +TKP GATK CSVH TT+HSDEECY+QGA RP
Sbjct:   54 RRDIMPLLKGMRRPDPSDTNFAAYERANEDLYAILFCLVELPAALTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTS---GPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRP 299          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1109.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF66_9PHAE1.200e-9760.89CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5L580_9PHAE2.710e-9461.29CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KW66_9PHAE6.020e-9463.86CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KMR7_9PHAE9.980e-8857.20CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J8P7_9PHAE1.410e-8760.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN28_9PHAE8.180e-8757.60Uncharacterized protein (Fragment) n=3 Tax=Ectocar... [more]
A0A6H5K7P0_9PHAE1.240e-8656.00CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KJB9_9PHAE8.800e-8657.60Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5KXR7_9PHAE1.140e-8554.96CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K3T5_9PHAE1.150e-8357.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1109contigA-nodosum_M_contig1109:47993..48878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog8128.ENSONIP00000026676
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size887
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000285
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,48JS3@7711|Chordata,49GTT@7742|Vertebrata
DescriptionPfam:UBN2_2
Cds size642
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866499.1718955-CDS-A-nodosum_M_contig1109:47992..486341680866499.1718955-CDS-A-nodosum_M_contig1109:47992..48634Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1109 47993..48634 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866499.183094-UTR-A-nodosum_M_contig1109:48634..488781680866499.183094-UTR-A-nodosum_M_contig1109:48634..48878Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1109 48635..48878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1109.10.1prot_A-nodosum_M_contig1109.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1109 47993..48634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1109.10.1

>prot_A-nodosum_M_contig1109.10.1 ID=prot_A-nodosum_M_contig1109.10.1|Name=mRNA_A-nodosum_M_contig1109.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=214bp
MLYLLVELPAALCFQTSEDESEISGDGQAAFKKLCGNYDKVTDEVIRGTM
EELVNTPREPGQNPDDYLNKKRLLHIRIEKMGEKVSDRWFKDICVTGFTD
KYKDVKMMMYRDSSFDIDQMQTTMRHMFLDQQSRNGTKGRIAERGTVMTT
KISTDHDVYCFRCKECGHTKRNCPKFKPRTKPDGATKGCSVHRTTSHSDE
ECYSQGATRPNKKA
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mRNA from alignment at A-nodosum_M_contig1109:47993..48878-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1109.10.1 ID=mRNA_A-nodosum_M_contig1109.10.1|Name=mRNA_A-nodosum_M_contig1109.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=886bp|location=Sequence derived from alignment at A-nodosum_M_contig1109:47993..48878- (Ascophyllum nodosum dioecious)
CGGCAACCGCAGAGGTCAACATGACCGATACAGGCGACACCGGGACCAGC CTGGCCAACGCCATACGCGGGCTCAAGAAGTTCGACGGAAGCAACCCAGC TGACTTCAAGGCCTGGATGAAGAAGTTTTGTGTCGTCATTGGCGTCCCCG CAGGGACATCTTACCTCTGCTGAAGGTAGAAGAAAAACTTACCGATACTG CCAAGATTGCGGACTACAACAAGGCCAATGAAGATATCTACGCCATGCTG TACCTTCTCGTCGAGCTACCTGCAGCCCTCTGTTTCCAGACGTCCGAGGA TGAAAGCGAGATCAGCGGCGACGGACAAGCAGCCTTCAAGAAACTCTGCG GCAACTACGACAAGGTCACCGATGAGGTCATCCGCGGAACCATGGAGGAG CTCGTGAACACGCCGAGGGAGCCTGGACAAAACCCAGACGACTACTTGAA CAAGAAGCGTCTTCTCCACATCAGGATCGAGAAGATGGGAGAAAAGGTAT CCGACCGGTGGTTCAAGGACATCTGCGTCACGGGCTTCACCGACAAGTAC AAGGATGTGAAGATGATGATGTACCGCGACTCGTCCTTTGATATCGACCA GATGCAGACCACCATGCGACACATGTTTCTCGACCAACAGTCGCGGAACG GGACGAAGGGACGCATAGCCGAGCGTGGCACCGTCATGACGACCAAGATA TCGACTGATCACGACGTCTACTGCTTCAGGTGCAAGGAGTGCGGGCACAC CAAGAGGAACTGCCCCAAATTTAAGCCCAGGACCAAGCCAGACGGAGCAA CGAAGGGGTGCTCGGTCCACCGGACTACCTCGCACAGCGACGAAGAGTGC TACAGCCAAGGAGCAACACGGCCGAACAAGAAGGCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1109:47993..48878-

>mRNA_A-nodosum_M_contig1109.10.1 ID=mRNA_A-nodosum_M_contig1109.10.1|Name=mRNA_A-nodosum_M_contig1109.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at A-nodosum_M_contig1109:47993..48878- (Ascophyllum nodosum dioecious)
ATGCTGTACCTTCTCGTCGAGCTACCTGCAGCCCTCTGTTTCCAGACGTC
CGAGGATGAAAGCGAGATCAGCGGCGACGGACAAGCAGCCTTCAAGAAAC
TCTGCGGCAACTACGACAAGGTCACCGATGAGGTCATCCGCGGAACCATG
GAGGAGCTCGTGAACACGCCGAGGGAGCCTGGACAAAACCCAGACGACTA
CTTGAACAAGAAGCGTCTTCTCCACATCAGGATCGAGAAGATGGGAGAAA
AGGTATCCGACCGGTGGTTCAAGGACATCTGCGTCACGGGCTTCACCGAC
AAGTACAAGGATGTGAAGATGATGATGTACCGCGACTCGTCCTTTGATAT
CGACCAGATGCAGACCACCATGCGACACATGTTTCTCGACCAACAGTCGC
GGAACGGGACGAAGGGACGCATAGCCGAGCGTGGCACCGTCATGACGACC
AAGATATCGACTGATCACGACGTCTACTGCTTCAGGTGCAAGGAGTGCGG
GCACACCAAGAGGAACTGCCCCAAATTTAAGCCCAGGACCAAGCCAGACG
GAGCAACGAAGGGGTGCTCGGTCCACCGGACTACCTCGCACAGCGACGAA
GAGTGCTACAGCCAAGGAGCAACACGGCCGAACAAGAAGGCG
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