mRNA_A-nodosum_M_contig1107.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1107.3.1
Unique NamemRNA_A-nodosum_M_contig1107.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1107.3.1 vs. uniprot
Match: A0A6H5KKW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW1_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 8.400e-28
Identity = 118/326 (36.20%), Postives = 167/326 (51.23%), Query Frame = 2 
Query:  110 VTHGAVMYASGKPRSRKRQDEDDAIFEATEAAYPILKRRASADSSATIKVQDFPCTTVRHGRVTRGDQLVRSPSFDGRMPDDVGQKIEPAGASVSWEVLGAGLSR-VRSNRFPA-------PGGAIKVKRDVMSVNTRP-RISVFMSSSAARRGAKKQSSSSGTPLDLSHRASKLSSLMTSPMGDTRGSSQASL-RGPNVTSQRIIGLRVVVPRSRSQAEQRVVDSNPPVVAMGSRRN----------------ALASPLDGMRVMPRLHRASSVGALTIAGSGDVVSRSQVLSPSGSLIQSCELSEQFAGRSQRRNLVCKVFSSG 1009
            V    ++   GKP++RKR DED+A+  + E+ +P++KRR+S  +S ++     P ++ + G       L +S SF              AG + +      G++R V S++ P        PGGAIKV  +V S   RP RISVFMS+S                   +  A   S + T+P   + G  + ++ R  +  +QR+  LR+ + R RS AE+ VVD  P VVAMGS  +                A AS       +P L RAS+VGALTIAGS +V+S S VLS SG +IQSCELS++     QRRNLVC+VF SG
Sbjct:  117 VNPNLLLPIGGKPKARKRHDEDEALV-SKESVFPVMKRRSST-ASISMNPSPPPTSSQQQG-------LEKSHSFC--------VTTASAGWAPAVSHQQPGVARHVGSSQPPQQGGVASPPGGAIKVNTNVTSGTVRPPRISVFMSNSGRXXXXXXXXXXXXXXXXXAAPAPSPSMMPTAPGSYSGGVLEPTMDRTASAQAQRLKDLRITM-RDRSVAEKYVVDHTPAVVAMGSPHHLNSTSALLFSEDDHFTATASGSAAGPTVPSLRRASTVGALTIAGS-EVMSTSPVLSSSGRIIQSCELSDRVGDGGQRRNLVCRVFGSG 423
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1107.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKW1_9PHAE8.400e-2836.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1107contigA-nodosum_M_contig1107:43214..47788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2780
Hectar predicted targeting categoryother localisation
Exons3
Cds size1020
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866497.0072095-UTR-A-nodosum_M_contig1107:43213..449481680866497.0072095-UTR-A-nodosum_M_contig1107:43213..44948Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1107 43214..44948 -
1680866497.038405-UTR-A-nodosum_M_contig1107:47763..477881680866497.038405-UTR-A-nodosum_M_contig1107:47763..47788Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1107 47764..47788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866497.0195181-CDS-A-nodosum_M_contig1107:46316..471411680866497.0195181-CDS-A-nodosum_M_contig1107:46316..47141Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1107 46317..47141 -
1680866497.029971-CDS-A-nodosum_M_contig1107:47568..477631680866497.029971-CDS-A-nodosum_M_contig1107:47568..47763Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1107 47569..47763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1107.3.1prot_A-nodosum_M_contig1107.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1107 46317..47763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1107.3.1

>prot_A-nodosum_M_contig1107.3.1 ID=prot_A-nodosum_M_contig1107.3.1|Name=mRNA_A-nodosum_M_contig1107.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=340bp
MNPGGLGEYSTDCDEWEGVRARDIAKSEVTHGAVMYASGKPRSRKRQDED
DAIFEATEAAYPILKRRASADSSATIKVQDFPCTTVRHGRVTRGDQLVRS
PSFDGRMPDDVGQKIEPAGASVSWEVLGAGLSRVRSNRFPAPGGAIKVKR
DVMSVNTRPRISVFMSSSAARRGAKKQSSSSGTPLDLSHRASKLSSLMTS
PMGDTRGSSQASLRGPNVTSQRIIGLRVVVPRSRSQAEQRVVDSNPPVVA
MGSRRNALASPLDGMRVMPRLHRASSVGALTIAGSGDVVSRSQVLSPSGS
LIQSCELSEQFAGRSQRRNLVCKVFSSGNRSSRPTPGPY*
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mRNA from alignment at A-nodosum_M_contig1107:43214..47788-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1107.3.1 ID=mRNA_A-nodosum_M_contig1107.3.1|Name=mRNA_A-nodosum_M_contig1107.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4575bp|location=Sequence derived from alignment at A-nodosum_M_contig1107:43214..47788- (Ascophyllum nodosum dioecious)
TGCATCTGGAAGCACCGTTGTTGGCATGAACCCGGGTGGGCTGGGAGAGT
ACAGTACCGACTGCGACGAATGGGAAGGAGTTCGAGCCCGGGACATCGCA
AAATCGGAGGTGACGCACGGCGCCGTGATGTATGCCTCGGGGAAGCCACG
GTCCCGCAAAAGGCAAGATGAGGATGATGCTATTTTCGAGGCAACCGAGG
CGGCATATCCCATCCTTAAGGTTTGTGCTTCATAAACGGTTTCGACGTTG
CACGAGCTAGCTTGAGATCTAGGCTGATGTTTGCCTTCTGAGCAATGAAC
ACAATACACCCTTGATTAGGTATTGATGGAATTCCTGAGCGCCACGTAGC
TGCCTCTATGACTGCATTCTTTTCTTCTTGGGTACTGTAAAAACAATACA
CAAAGTGCTGCACTCGTACGTACGTGGAATAACTTCGAGTGTGGGCCACA
ACTCTCCGGCACAGGAAGAGCAAATTTCCCCCATCTTTTTTTGGTGCAGC
CTTGAGGATATGCATCGGATGGGTTGAACGAGCGCGCCCTCCAGAGAGCC
AGTAAGATACCCCCCCCCCCCTCGATCGCAGCGCCCGTGGCTCATTGAAG
GACGTGGCCTTCATCCCCTACCCCGCCTTTGACTCCTGTCTCAACAGCGA
AGAGCATCAGCGGATTCTTCGGCAACGATCAAGGTGCAGGACTTCCCGTG
CACCACTGTACGCCATGGCAGAGTCACACGCGGAGACCAGTTGGTGAGGT
CTCCAAGCTTCGACGGGCGAATGCCTGATGACGTCGGACAAAAAATCGAA
CCAGCTGGGGCTTCTGTTAGTTGGGAGGTTCTAGGAGCTGGCCTTTCGCG
GGTGCGCTCCAACCGTTTTCCTGCGCCTGGCGGTGCTATCAAGGTGAAGA
GGGATGTCATGTCAGTCAACACCAGACCGCGCATATCGGTTTTCATGTCC
TCTTCGGCAGCTCGCCGAGGAGCGAAGAAGCAGAGCTCATCTTCCGGAAC
GCCGCTGGACCTGAGTCATCGCGCTTCGAAACTCTCTTCGCTCATGACTA
GCCCTATGGGTGATACCCGTGGGTCTTCGCAAGCTAGCTTACGCGGGCCC
AATGTTACTTCCCAACGAATCATTGGACTAAGGGTTGTGGTGCCCCGCAG
TCGCAGTCAGGCCGAGCAGCGTGTGGTGGACTCAAATCCCCCTGTTGTGG
CAATGGGTTCGCGCCGGAATGCCCTGGCTTCTCCTCTGGATGGTATGCGC
GTAATGCCTCGGCTTCATCGGGCGAGCTCCGTCGGCGCTCTCACGATTGC
TGGAAGCGGAGACGTGGTGTCGAGGTCCCAGGTTTTGTCCCCCTCTGGAA
GCTTAATTCAATCGTGCGAGCTCTCTGAACAATTTGCCGGGCGGTCTCAG
AGACGCAACTTGGTTTGCAAAGTCTTCAGCAGCGGGAACCGGTCTAGCCG
GCCTACACCGGGACCATACTAGGTGAGGGGGTAGAGAATTATGTCCGCGC
AGTAGATGGGAGGGAACCCAATGCGCCGTCGAGGAAGCTACTATTGAATT
TTACGTGTACGGCTCTTGTGTGACTGGCAACTCGTGCAGGGTGTCTTCGT
CCCATACGTAATACTGTAGTGTAGTACTGATAGTTTCCGGAAGCTCGTAC
TCGTTATGGTTTTGACTTGCAATAGTCAGAAACACTATTATAGTAAACTT
GTGTCTGAAACAAGTGTGTGGCACCAGGGTTGATTTCTCTAATGATTCTA
CAAATGTACAACCCTTGTGGTTCTTTGTTGTCGGGGAGATCGATTTCAAG
CTATTTTGAGTCCAGTCTATGAGTTTTTGCACGCTTGCAATTCCTATCCA
TTGCAAACACGCTCCTGGTTCTAATTCGGCCTAGTTTGGTTCCTTGAGAG
TTAGAGTGCATTACCTACTCCGCGCGCTTCCTAAACCCGATTCACCCTCG
ATGTTCTCAATTCTCGAAAAATTTCTGGCACAGCCTCTGATTTCGGAGGT
TTCTAGATTATTTCCACCGGTACAAAAAACGGTCTAGAAAGCGTATCGGC
ACGACAGTCAGTTGAAGAGCCCCACCCATGGATTTTCTTAACGATTCACA
CTTTTTAAAGAAAAATCTGAACGCATCGAGACCTTCTGAGCATCCCACAT
AGGGGGGGAAATGTCGAAACGCTTAGGTGGGATCATAGGCTGCAAATACA
ATACATCTTACTTGCATTTGAAGTGAAGGTTCAATCGAGAGTTAACCGTC
AAATAAGTCCCGAAGCACGGGTGCTCGTGACATCTTTGTCGCGACAGACC
TTCGCCTAGAGGTTGGCGTTGGACCCATGCTGGGTTTTTCTGTGCTTTCA
GGAGAAACATCTGACGGGTTGTCCATTGATTGGTCCGCTGCATTTCGAAG
CTTGAAGTTGACAAGCGACGATGCGTTTTTTTCTCTAATTGAAAGAATAC
TCGTTTTCTAACGGTGCGGAAGCAACGTGAATGAGCTCTTCGACAAACCC
TAGGTATATCCCCGAGACCCCATGGGTCGCATAGGTTGCGAATCACACGT
ATTGTAGGTCGACGGATTGGCAGAGTTTCATCGGTCGGACTTTTTCTCTG
CATTACGATTCGAGTATTAGTAGTCAAGTACAGTACCTCGGTGTGTCAGG
GTGGTTCGCGCCGTTCTCTGGAGGTGCCACAGCATTCGGTGTTTGAGAGT
ATCCGCGATGATCTAATTGTCTTCCCATTGCGCTGCCACCTTCTGCCCAA
CACGAACGTTTGGCCCTGACATACCAGTGCTGTGTTTGTTTTTGTGTTTG
GTGCCAACGATGTTTTTTATGCCTGGTTGTGCTGCCACAGATACAGGATT
GGACGGGGTTCCCCGGAAAGCATCGACTTCGATGGTGTTCGTTGGTTCCG
GTGCAAAAATGCCACTGTCCCCGAGAACTGTCGCAGGTTGGCGACGACTC
CCGGAGCGATCGTGATGCCACATGAGAGGAGGAACTCCGCCCTTTTGCGT
CTACAAAGTTCTCCCTGATTTTGGATCAGATAAAGAGTTCAATCGCCAGA
TAATTAGCTACTTTTACGTTAATATCACTTGACCTCTGCTTTGGAGAAGG
TGACAATGGGAACCGCGCGATGGACAGTTTTCGTCGTGCAAATTTATGTG
TTTCTCGACGGGATGTGCCCCGTGTATCGTGTGAATCGCTAGCCTTTACT
TGTATACAACTCGCTGTGCTGCCTCGGAGACATGTGTTTGTAAATATTCT
GTACGAACAAATCCTTTTTTATCGTGTTCGGTTCTCGTAGCGCTGCTGTA
TTTTATGGTCATACTGTACTGTCAGCCCTCTGAAGGTCTTGGCGCACCCT
CAGTCAAAACTTTGATATTCTTTCCTCCTGGTTGTCATTATCACATTGTG
AGACCTGTATGGTAGAAATTGAGGGGCGTTTATCTGTCCTATCGCCCTAG
TGTACAATATTCGCCCCAAGCGATTACTCAAGAGGTCGAGACGTGGCATT
CTCACGCTCTGTGAGTTGATAGATAATGCTACTATTAATAGCTGTACCCA
GCGGGGACCTGCATCGGTCAGCCCCTCTAGCAGGTGCGGGCATGCATATA
TGCTGATTCGTTTCCGGGGTCTCGATTGGTATTCGCTCGAAAGAGTTTTA
TCCTCTGTAACGTAAATTTTTGTTTTGTATGAAAGAACTTGCAGGGTACA
GAAGCGTGCAAGAGCGCCGCTTACCCGCAAGATGGTGCACACAATGTCCT
GAGTCGAGTCGAGGTTGGAAAGAAATGCAATAGATAGTAGACTTCGGAGA
CCGAAGAGGGCAGATGGATTAATTGATGGGAGTTCTATCGCTGCTGTCAG
CATTTCGCGAAGGAGAGAAGAGGTGCCGTCTTGTGCTGGCGTTACCCATT
GGGAGCGCTCCTGCCCTTGTCGTGATGGTGGCTATGTTTTTTGCGGAATC
ACGGTGGAGTTCTGGCCCATCAAGCTGAGGAAGAGGCTTGTGGACTGGAC
CACGTCAGGATGGTGGGTTGTTGGTTGCCAAAACTAAGGCTGGCTTACAA
CCGCGAATAGCGTAGGCCGTTGAAGGTTCGAGCGTGTTTCTCGGCGCGAA
ACCGGCGAACGGTCCGTCTTTTGAAGAAATTGCAATGAACCCGTGCCGTA
CGCGGGGTTGATCATTGCGTGGATTTTTCACTGACCAGCTGGAAAAATTC
CGGCAGGTTTCTCTTTTGAAAAAAATATAATGGCAAGTTTTCTTGATACG
AGGTACTGTTAGATCTGCAAAGTACCAGTATTTGGTAAAATATTTTGAGC
ATTCGCGGTGGTATTTTTTGGAAGGTCGAAATGTACTGTATAATAAGTAC
ATAAGGAAGCTGTGGTCTTACCCAGTCGGAAAACTTAATCGCCGAAGACA
GGGAAACACATCAATGTTTCATGAGGTGGTGTATTCGCTAGGTGTGGCAA
GTTCTTCTGTTCGTGGTTGACCGCGGGGATACCTAAACACCGCTTTATAC
GATTTCTTCAAATGAATATAATACTCCGAGGGTTGAGTTCCACGTAAGGA
ACACTTGGAACTTGCTTGCGTGCAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1107:43214..47788-

>mRNA_A-nodosum_M_contig1107.3.1 ID=mRNA_A-nodosum_M_contig1107.3.1|Name=mRNA_A-nodosum_M_contig1107.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at A-nodosum_M_contig1107:43214..47788- (Ascophyllum nodosum dioecious)
ATGAACCCGGGTGGGCTGGGAGAGTACAGTACCGACTGCGACGAATGGGA
AGGAGTTCGAGCCCGGGACATCGCAAAATCGGAGGTGACGCACGGCGCCG
TGATGTATGCCTCGGGGAAGCCACGGTCCCGCAAAAGGCAAGATGAGGAT
GATGCTATTTTCGAGGCAACCGAGGCGGCATATCCCATCCTTAAGCGAAG
AGCATCAGCGGATTCTTCGGCAACGATCAAGGTGCAGGACTTCCCGTGCA
CCACTGTACGCCATGGCAGAGTCACACGCGGAGACCAGTTGGTGAGGTCT
CCAAGCTTCGACGGGCGAATGCCTGATGACGTCGGACAAAAAATCGAACC
AGCTGGGGCTTCTGTTAGTTGGGAGGTTCTAGGAGCTGGCCTTTCGCGGG
TGCGCTCCAACCGTTTTCCTGCGCCTGGCGGTGCTATCAAGGTGAAGAGG
GATGTCATGTCAGTCAACACCAGACCGCGCATATCGGTTTTCATGTCCTC
TTCGGCAGCTCGCCGAGGAGCGAAGAAGCAGAGCTCATCTTCCGGAACGC
CGCTGGACCTGAGTCATCGCGCTTCGAAACTCTCTTCGCTCATGACTAGC
CCTATGGGTGATACCCGTGGGTCTTCGCAAGCTAGCTTACGCGGGCCCAA
TGTTACTTCCCAACGAATCATTGGACTAAGGGTTGTGGTGCCCCGCAGTC
GCAGTCAGGCCGAGCAGCGTGTGGTGGACTCAAATCCCCCTGTTGTGGCA
ATGGGTTCGCGCCGGAATGCCCTGGCTTCTCCTCTGGATGGTATGCGCGT
AATGCCTCGGCTTCATCGGGCGAGCTCCGTCGGCGCTCTCACGATTGCTG
GAAGCGGAGACGTGGTGTCGAGGTCCCAGGTTTTGTCCCCCTCTGGAAGC
TTAATTCAATCGTGCGAGCTCTCTGAACAATTTGCCGGGCGGTCTCAGAG
ACGCAACTTGGTTTGCAAAGTCTTCAGCAGCGGGAACCGGTCTAGCCGGC
CTACACCGGGACCATACTAG
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