mRNA_A-nodosum_M_contig1107.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1107.2.1
Unique NamemRNA_A-nodosum_M_contig1107.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1107.2.1 vs. uniprot
Match: A0A126X308_SARHM (Putative LOV domain-containing protein n=2 Tax=Sargassum TaxID=3015 RepID=A0A126X308_SARHM)

HSP 1 Score: 72.8 bits (177), Expect = 4.970e-13
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   79 QGIRFDDIFYGVSSTRDGDLLDVSSDEYIGLNVTLSPISSSEGRTQTPFAQYAVLGD 249
            +GI  DDIF GV  T DG+LLD+ SD+   LN+TLS  S SEGR QTPFAQ+AV+GD
Sbjct:   51 RGINLDDIFSGVLFTPDGELLDIPSDDDENLNITLSTTSISEGRAQTPFAQFAVVGD 107
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1107.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A126X308_SARHM4.970e-1363.16Putative LOV domain-containing protein n=2 Tax=Sar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1107contigA-nodosum_M_contig1107:25178..25444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FMH8
Model size267
Max annot lvl2880.D7FMH8|-
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.89e-10
EggNOG OGs2BEDG@1|root,2S14J@2759|Eukaryota
DescriptionPAS domain
Cds size267
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866496.976979-CDS-A-nodosum_M_contig1107:25177..254441680866496.976979-CDS-A-nodosum_M_contig1107:25177..25444Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1107 25178..25444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1107.2.1prot_A-nodosum_M_contig1107.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1107 25178..25444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1107.2.1

>prot_A-nodosum_M_contig1107.2.1 ID=prot_A-nodosum_M_contig1107.2.1|Name=mRNA_A-nodosum_M_contig1107.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=89bp
IKSVHLLALYTFLAVCYMRFARRPSSQGIRFDDIFYGVSSTRDGDLLDVS
SDEYIGLNVTLSPISSSEGRTQTPFAQYAVLGDSHDLTG
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mRNA from alignment at A-nodosum_M_contig1107:25178..25444+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1107.2.1 ID=mRNA_A-nodosum_M_contig1107.2.1|Name=mRNA_A-nodosum_M_contig1107.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at A-nodosum_M_contig1107:25178..25444+ (Ascophyllum nodosum dioecious)
ATTAAATCGGTGCACCTCTTAGCCCTTTACACGTTCCTCGCTGTATGTTA
TATGCGCTTCGCGCGCCGACCCTCTTCACAGGGGATAAGGTTCGACGATA
TTTTCTACGGGGTGTCCTCCACTCGCGACGGTGATCTGCTCGACGTCTCG
TCGGACGAATACATCGGCCTTAACGTAACCCTCTCCCCCATCAGTTCCAG
CGAGGGTCGCACGCAGACCCCCTTCGCGCAGTACGCGGTACTGGGAGACA
GCCACGACTTAACGGGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1107:25178..25444+

>mRNA_A-nodosum_M_contig1107.2.1 ID=mRNA_A-nodosum_M_contig1107.2.1|Name=mRNA_A-nodosum_M_contig1107.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=267bp|location=Sequence derived from alignment at A-nodosum_M_contig1107:25178..25444+ (Ascophyllum nodosum dioecious)
ATTAAATCGGTGCACCTCTTAGCCCTTTACACGTTCCTCGCTGTATGTTA
TATGCGCTTCGCGCGCCGACCCTCTTCACAGGGGATAAGGTTCGACGATA
TTTTCTACGGGGTGTCCTCCACTCGCGACGGTGATCTGCTCGACGTCTCG
TCGGACGAATACATCGGCCTTAACGTAACCCTCTCCCCCATCAGTTCCAG
CGAGGGTCGCACGCAGACCCCCTTCGCGCAGTACGCGGTACTGGGAGACA
GCCACGACTTAACGGGA
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