mRNA_A-nodosum_M_contig1107.16.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1107.16.1 vs. uniprot
Match: D8LJG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG5_ECTSI) HSP 1 Score: 240 bits (613), Expect = 3.270e-68 Identity = 138/240 (57.50%), Postives = 161/240 (67.08%), Query Frame = 3
Query: 225 PSYASLVVKARDVMGPGPQHQALLPVAEMSKAWENVVAATYAHLKNAPVLFSRQSVRGEQGRWIAPGKAVVVDEEEDGGIG-GEERVEYAKRLGKILLWDGLPVVRIPTSLKKAMLQHNCLGADATPPFLRAHFRKTDVAHPCLALEAGGRRSLPPGA--------------PGRNG--GAVVTAGDSDARTRPPAKQLDARSNALFLLQASVAGLKADAFGELVGLPLLPLADGTLGRF 893
P YA+LV +ARDVM GPQHQALLP AE K W+ VVAATY++LKN PVLFSR S G +GRWI PG+AVVV EERVEY KRL KILLWD LPVVR+P SLKK ML + CL ADATP FLR+HF V+H CL LEAGG G P R G V+ +G+ R RPPA + +AR+NALFLL+A+ +GL A+ FG+LVGLPLLPLA+ TLGRF
Sbjct: 1551 PIYAALVARARDVMQAGPQHQALLPAAETPKPWDTVVAATYSNLKNVPVLFSR-SATGGKGRWIPPGQAVVVXXXXXXXXXXSEERVEYTKRLTKILLWDRLPVVRLPASLKKTMLHYKCLAADATPAFLRSHFGNASVSHACLGLEAGGAAVSSDGGTTTVARVPDRGPPQPRRTAPVGGVMNSGEL-VRFRPPATRQEARTNALFLLEAAASGLGAETFGQLVGLPLLPLANRTLGRF 1788
BLAST of mRNA_A-nodosum_M_contig1107.16.1 vs. uniprot
Match: A0A6H5K688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE) HSP 1 Score: 226 bits (577), Expect = 2.220e-63 Identity = 128/228 (56.14%), Postives = 153/228 (67.11%), Query Frame = 3
Query: 261 VMGPGPQHQALLPVAEMSKAWENVVAATYAHLKNAPVLFSRQSVRGEQGRWIAPGKAVVVDE-EEDGGIGGEERVEYAKRLGKILLWDGLPVVRIPTSLKKAMLQHNCLGADATPPFLRAHFRKTDVAHPCLALEAGGRRSLPPGA--------------PGRNG--GAVVTAGDSDARTRPPAKQLDARSNALFLLQASVAGLKADAFGELVGLPLLPLADGTLGRF 893
VM GPQHQALLP AE + W+ VVAATY++LKN PVLFSR S G +GRW+ PG+A+VV+E E EERVEY KRL KILLWD LPVVR+P SLKK ML + CL ADATP FLR+HF ++H CL LEAGG G P R G V+ +G+ R R PA Q +AR+NALFLL+A+ +GL A+ FG+LVGLPLLPLA+ TLGRF
Sbjct: 874 VMQAGPQHQALLPAAETPRPWDTVVAATYSNLKNVPVLFSR-SATGGKGRWVTPGQAIVVEEVEXXXXXXSEERVEYTKRLTKILLWDRLPVVRLPASLKKTMLHYKCLAADATPAFLRSHFGNASISHACLGLEAGGTAVSSDGGSTTVARVPDRGPPQPRRTAPVGGVMNSGEL-VRFRAPATQQEARTNALFLLEAATSGLGAETFGQLVGLPLLPLANHTLGRF 1099
BLAST of mRNA_A-nodosum_M_contig1107.16.1 vs. uniprot
Match: A0A835YL62_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA) HSP 1 Score: 102 bits (253), Expect = 2.590e-20 Identity = 73/228 (32.02%), Postives = 108/228 (47.37%), Query Frame = 3
Query: 225 PSYASLVVKARDVMGPGPQHQALLPV-AEMSKAWENVVAATYAHLKNAPVLFSRQSVRGEQGRWIAPGKAVVV-----DEEEDGGIGGEERVEYAKRLGKILLWDGLPVVRIPTSLKKAMLQHNCLGADATPPFLRAHFRKTDVAHPCLALEAGGRRSLPPGAPGRNGGAVVTAGDSDARTRPPAKQLDARSNALFLLQASVAGLKADAFGELVGLPLLPLADGTLGR 890
P+YA L+ A +GPG Q+ +LLP A K W+ VV A Y L+ A VL++ G+W+ AVV+ + D + + A++L K+L+ +G+PVV++P LKK +L H C+ A+ F+R++F++ LE G +A NA FLL + L D GEL+GLPLLPL +GTL R
Sbjct: 2205 PAYALLLDAATKNLGPGAQYLSLLPAEASPPKPWDIVVEALYKRLRKASVLYTEAL----NGKWVPLESAVVIGAAAAEGGADNALAVAAQAAQAEQLHKVLVEEGVPVVKVPDGLKKTLLYHGCVAAEGNSAFVRSYFKERRYN---TCLEGG----------------------------------NALHNAQFLLDFAHKDLAPDRLGELIGLPLLPLTNGTLCR 2391
BLAST of mRNA_A-nodosum_M_contig1107.16.1 vs. uniprot
Match: A0A8J5ERX4_ZINOF (RING-type domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5ERX4_ZINOF) HSP 1 Score: 86.3 bits (212), Expect = 5.560e-15 Identity = 44/72 (61.11%), Postives = 49/72 (68.06%), Query Frame = 2
Query: 17 SRNSQPPLAFKGQAFCFLPLPVTTLLPVHVNGFFELSTNRETSGSERIWQGRGKRRSEWNAILLRDVIAPIL 232
SR SQ F+GQAFCFLPLP++T LPVHVN +FELS+NR G GK RSEWN LL DVIAP L
Sbjct: 1590 SRVSQVRKNFEGQAFCFLPLPISTGLPVHVNAYFELSSNRRDIWFGNDMAGGGKARSEWNICLLEDVIAPTL 1661
BLAST of mRNA_A-nodosum_M_contig1107.16.1 vs. uniprot
Match: UPI001C4BD0DE (sacsin-like n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4BD0DE) HSP 1 Score: 86.3 bits (212), Expect = 5.570e-15 Identity = 44/72 (61.11%), Postives = 49/72 (68.06%), Query Frame = 2
Query: 17 SRNSQPPLAFKGQAFCFLPLPVTTLLPVHVNGFFELSTNRETSGSERIWQGRGKRRSEWNAILLRDVIAPIL 232
SR SQ F+GQAFCFLPLP++T LPVHVN +FELS+NR G GK RSEWN LL DVIAP L
Sbjct: 1757 SRVSQVRKNFEGQAFCFLPLPISTGLPVHVNAYFELSSNRRDIWFGNDMAGGGKARSEWNICLLEDVIAPTL 1828
BLAST of mRNA_A-nodosum_M_contig1107.16.1 vs. uniprot
Match: UPI001C4C32D4 (sacsin-like n=1 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4C32D4) HSP 1 Score: 86.3 bits (212), Expect = 5.570e-15 Identity = 44/72 (61.11%), Postives = 49/72 (68.06%), Query Frame = 2
Query: 17 SRNSQPPLAFKGQAFCFLPLPVTTLLPVHVNGFFELSTNRETSGSERIWQGRGKRRSEWNAILLRDVIAPIL 232
SR SQ F+GQAFCFLPLP++T LPVHVN +FELS+NR G GK RSEWN LL DVIAP L
Sbjct: 1757 SRVSQVRKNFEGQAFCFLPLPISTGLPVHVNAYFELSSNRRDIWFGNDMAGGGKARSEWNICLLEDVIAPTL 1828
BLAST of mRNA_A-nodosum_M_contig1107.16.1 vs. uniprot
Match: A0A8J5C5D5_ZINOF (RING-type domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5C5D5_ZINOF) HSP 1 Score: 86.3 bits (212), Expect = 5.570e-15 Identity = 44/72 (61.11%), Postives = 49/72 (68.06%), Query Frame = 2
Query: 17 SRNSQPPLAFKGQAFCFLPLPVTTLLPVHVNGFFELSTNRETSGSERIWQGRGKRRSEWNAILLRDVIAPIL 232
SR SQ F+GQAFCFLPLP++T LPVHVN +FELS+NR G GK RSEWN LL DVIAP L
Sbjct: 1757 SRVSQVRKNFEGQAFCFLPLPISTGLPVHVNAYFELSSNRRDIWFGNDMAGGGKARSEWNICLLEDVIAPTL 1828
BLAST of mRNA_A-nodosum_M_contig1107.16.1 vs. uniprot
Match: A0A7S0JDR3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JDR3_9EUKA) HSP 1 Score: 77.8 bits (190), Expect = 2.540e-14 Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 2
Query: 26 SQPPLAFKGQAFCFLPLPVTTLLPVHVNGFFELSTNRETSGSERIWQGRGKRRSEWNAILLRDVIAP 226
+ P L G+AFCFLPLP T LPVH NG+FELS NR G G+ RSEWN L+RDV+AP
Sbjct: 44 ASPSLPVAGRAFCFLPLPTETGLPVHANGYFELSANRRDIWHGDDMVGTGRLRSEWNTALVRDVVAP 110
BLAST of mRNA_A-nodosum_M_contig1107.16.1 vs. uniprot
Match: A0A426Z2L5_ENSVE (Uncharacterized protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426Z2L5_ENSVE) HSP 1 Score: 84.0 bits (206), Expect = 3.150e-14 Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 2
Query: 44 FKGQAFCFLPLPVTTLLPVHVNGFFELSTNRETSGSERIWQGRGKRRSEWNAILLRDVIAPIL 232
F+G+AFCFLPLPVTT LPVHVN +FELS+NR G GK RSEWN LL DVIAP L
Sbjct: 1614 FEGRAFCFLPLPVTTGLPVHVNAYFELSSNRRDIWFGNDMAGGGKARSEWNICLLEDVIAPSL 1676
BLAST of mRNA_A-nodosum_M_contig1107.16.1 vs. uniprot
Match: A0A804HSQ6_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804HSQ6_MUSAM) HSP 1 Score: 84.0 bits (206), Expect = 3.330e-14 Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 2
Query: 44 FKGQAFCFLPLPVTTLLPVHVNGFFELSTNRETSGSERIWQGRGKRRSEWNAILLRDVIAPIL 232
F+G+AFCFLPLPVTT LPVHVN +FELS+NR G GK RSEWN LL DVIAP L
Sbjct: 1765 FEGRAFCFLPLPVTTGLPVHVNAYFELSSNRRDIWFGNDMAGGGKARSEWNICLLEDVIAPSL 1827 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1107.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1107.16.1 >prot_A-nodosum_M_contig1107.16.1 ID=prot_A-nodosum_M_contig1107.16.1|Name=mRNA_A-nodosum_M_contig1107.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=239bp MPSCCVTSSRPSYASLVVKARDVMGPGPQHQALLPVAEMSKAWENVVAATback to top mRNA from alignment at A-nodosum_M_contig1107:238351..240378+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1107.16.1 ID=mRNA_A-nodosum_M_contig1107.16.1|Name=mRNA_A-nodosum_M_contig1107.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2028bp|location=Sequence derived from alignment at A-nodosum_M_contig1107:238351..240378+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1107:238351..240378+ >mRNA_A-nodosum_M_contig1107.16.1 ID=mRNA_A-nodosum_M_contig1107.16.1|Name=mRNA_A-nodosum_M_contig1107.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=717bp|location=Sequence derived from alignment at A-nodosum_M_contig1107:238351..240378+ (Ascophyllum nodosum dioecious)back to top |