mRNA_A-nodosum_M_contig11.49.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11.49.1
Unique NamemRNA_A-nodosum_M_contig11.49.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11.49.1 vs. uniprot
Match: A0A6H5JRD1_9PHAE (Homologous-pairing protein 2 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.970e-13
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 3 
Query: 1272 EARNAAIKAQGHSASAGEGDLKATRAGFNKLLALWVNRKRNAMDVVDMIADGMDMKPKVIMD 1457
            EARN A K QG S +AG   +KA +  FNK  ALWV RKRNAMDVVDMIADGM+ KPKV+M+
Sbjct:  358 EARNGAAKGQGRSVAAG--GMKAAKQSFNKFRALWVTRKRNAMDVVDMIADGMEKKPKVVME 417
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BLAST of mRNA_A-nodosum_M_contig11.49.1 vs. uniprot
Match: D7G4U2_ECTSI (Homologous-pairing protein 2 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U2_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.090e-12
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 3 
Query: 1272 EARNAAIKAQGHSASAGEGDLKATRAGFNKLLALWVNRKRNAMDVVDMIADGMDMKPKVIMD 1457
            EARN A K QG S +AG   +K  +  FNK  ALWV RKRNAMDVVDMIADGM+ KPKV+M+
Sbjct:  245 EARNGAAKGQGRSVAAG--GMKTAKQSFNKFRALWVTRKRNAMDVVDMIADGMEKKPKVVME 304
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRD1_9PHAE8.970e-1366.13Homologous-pairing protein 2 homolog n=1 Tax=Ectoc... [more]
D7G4U2_ECTSI1.090e-1264.52Homologous-pairing protein 2 homolog n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11contigA-nodosum_M_contig11:550444..553426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4U2
Preferred namePSMC3IP
PFAMsTBPIP
Model size1826
Max annot lvl2759|Eukaryota
KEGG koko:K06695
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006310,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0019904,GO:0022402,GO:0022414,GO:0022607,GO:0030331,GO:0030374,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0034641,GO:0035257,GO:0035258,GO:0035259,GO:0035825,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046966,GO:0046983,GO:0048285,GO:0048518,GO:0048522,GO:0050681,GO:0050692,GO:0050789,GO:0050794,GO:0051026,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051321,GO:0051427,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140110,GO:1901360,GO:1901363,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons3
Evalue2.64e-16
EggNOG OGsKOG4603@1|root,KOG4603@2759|Eukaryota
Descriptionhomologous recombination
Cds size345
COG categoryS
BRITEko00000,ko03051
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866487.5226824-UTR-A-nodosum_M_contig11:550443..5508001680866487.5226824-UTR-A-nodosum_M_contig11:550443..550800Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 550444..550800 -
1680866487.5666013-UTR-A-nodosum_M_contig11:552302..5534261680866487.5666013-UTR-A-nodosum_M_contig11:552302..553426Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11 552303..553426 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866487.5413225-CDS-A-nodosum_M_contig11:550800..5508151680866487.5413225-CDS-A-nodosum_M_contig11:550800..550815Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 550801..550815 -
1680866487.5496008-CDS-A-nodosum_M_contig11:551499..5515931680866487.5496008-CDS-A-nodosum_M_contig11:551499..551593Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 551500..551593 -
1680866487.5581288-CDS-A-nodosum_M_contig11:552066..5523021680866487.5581288-CDS-A-nodosum_M_contig11:552066..552302Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 552067..552302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11.49.1prot_A-nodosum_M_contig11.49.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11 550801..552302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11.49.1

>prot_A-nodosum_M_contig11.49.1 ID=prot_A-nodosum_M_contig11.49.1|Name=mRNA_A-nodosum_M_contig11.49.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=115bp
MDGLDIVVVVRCSANGGGRLQRYVLTVIAEYDFTTRHPWWCKTLNTYVQE
ARNAAIKAQGHSASAGEGDLKATRAGFNKLLALWVNRKRNAMDVVDMIAD
GMDMKPKVIMDGTC*
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mRNA from alignment at A-nodosum_M_contig11:550444..553426-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11.49.1 ID=mRNA_A-nodosum_M_contig11.49.1|Name=mRNA_A-nodosum_M_contig11.49.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2983bp|location=Sequence derived from alignment at A-nodosum_M_contig11:550444..553426- (Ascophyllum nodosum dioecious)
CATGGGGTTATTTATCGCTTAATCAAATTCCCGCGCCTCCGTGCACGACT
GAACTACTCGAGAGTTCTAACTATTTATTCTACTTTTCTCGGCCCATTTG
GGATCAAAGTTACAGCAATACGAGTACTACACTAGGGCTCTTAACTCTAC
AGGGAAAAGTACATTACGCGCAGTACTAAAAACGAAATAAATTGCCGCTG
CCCCCAGTGGCGTGTGCAACAGTACACTTTTACAGTAATACGGCAGTATC
TTCACGTCGGTACTTCTTGTCAAAGCAAACCAGTGGTGATCCACTTGGCG
CATGGCCAGTGTTACCGCCTCCCACGGTGCCGTTCTCGGTAGTGGGGACA
AAAAATAACCCTCCCTGGTATGTTCCTATGGCTCAAAAGGGATGTTACTT
CTTACTCACCGGTTGGATATGTGCAGTGACCTCATATGTATGTGGCCGTT
GTGTTTTGGGTGGATGGGTGGTGTCTCAAACGTGTTTGCGCTTGTCCGCT
CTCTGTCGTGGGGAAGCGAAAGGGGTTTGGAAGTGATCCAAGGGTCTCTC
TAGACTTGTCAGAGTAAGAGCGTTTCTTTGGGAGGGTTCTGCGAGCTCTG
GGGTCGTTCCGGAGAACCGGTCCCTGCAAAATACGGGAGTATCTTCACGT
CGGTACTTCTTGTCTAGGAAGTATGGGATAAAATTATTAATAGTGGTCAC
ACTTACCGTTACTAACGGGCCCATTTGATGGAGTACAAGTTTGGTGGTTG
GCACGTGTATTAAACTCTCGTGTTGCATTCGAGACTAGGCTCTCCCATAT
TTCCTTTCCCGTTGGTGGTCATATCATGGGTGCGTTCCCGAATGTCGCCC
AGTGTCTACTCTGCTCAAATTGTCCGAACTCGTTGATTTCTCCTGTTCTG
GTGACACCCTGGTTACCATGGAGTTTCCTACAGATCCGACACAGATTTCG
ACGACAAGCTGGCGTCGACCGCCCGAGAAGTCGATGAGCAGATGGCGAGT
CAAGGTCTTGGGGGGAGGTGTAGGGGCGAAGGGGAGACGATGGAGCCGAT
CCCGGGTTTAACGAGGATAAAATGTCATCTTGGGACCATGGATTTCGCCG
ACTTTCAAGGAAAGTACTCGATGGATGGATGGGCTCGACATTGTGGTTGT
GGTGCGGTGCTCGGCCAACGGTGGAGGAAGATTGCAACGATATGTCTTGA
CTGTGATAGCGGAGTATGACTTTACGACACGCCATCCATGGTGGTGCAAA
ACATTAAATACGTACGTACAGGAAGCGAGGAATGCCGCGATCAAGGCTCA
GGGACACAGTGCCAGTGCCGGCGAGGGTGATTTGAAGGCGACGAGGGCAG
GATTCAACAAGTGAGAGCGTCAGCGCGCGACTTTCGCTTGGCACACACTC
ACACAAACCAAATGAGTTTGGGTTTATGCCCTGTTCATATATCCAGGATC
TTGTGACAGATTCTCTTGACCCACCCGTGACGTTAGGTACAGCGGCAACA
CCTGCGCCTCCGCGTTAGGACTGTTTCTGGACCGCGAAAAAAAAACTCGA
AATCGATAGTAACACGATAGTCGTACACATACTCGGACTCTTTCTTACGA
GAGTCTCTTACATGCGCACGTAATACTTCTGTCCTAAGAGAATGCTTTGC
CCCCTCCAAGCCATCATCTGATGGTCACCTGATTTTTTCGAAACGGGAAC
TATGGTCCAACTACGAATTTTGGGTTTTCTTTTGTTCAATCGTCTGTTTC
GTCCCACGCTTCAGACTAACCTTTTTTTTTTTTTTTTAAATAAACTTCGT
TTTGTTTTTTCCCTTTGGTACATCGTTGGAAAGACTCCTAGCATTGTGGG
TGAATCGCAAGCGAAACGCCATGGACGTAGTTGACATGATCGCCGATGGA
ATGGATATGAAGCCGAAAGTTATTATGGTGAGGCGAGAAGCTTCTTTCGG
AAATAAGTACTGTATACTGTATTATGGTCAAATTTGAATGTTGTAAAGAA
GGCGACAAACTACTAAAATTGAGTTGCTACAAATGCCTCCGGTACTTTCA
ATATGCCCACTTCATACCAATATTAGTATAGTGGGTGTGGGAAAAGAGAG
GCGCACATTAGTTGGTCTATGGTGACCTGCAAAGGCAGCACCCGTTACTG
GAACTACCTTGAGGACTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGA
ACGCCATCGGTACGCAATTGCGTGACCCGATAAACTCGCGACCGACCCGA
TGGCGTGTGGCGGTCTAAATAAATAGACGCCGCCGCGGAAATTGGGAGAA
ATCCCGTGAGTAAGCACCAGATTTAGCCTCAGTGTGGAGAATGACCAGAC
TGGCGCGGGCGCGAGACCGAATTCTCAGGCGCGAACGGGGACAGGGAAAT
ATTAATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGACAACTTCACCC
GGTCGATCTATACTCTTATATATGTGATAACCATACATAAATAATTTGTT
GACCAAAAACATTGCTCTCGCGGAAATGCTAAAACATATCTGGATTAAAA
CATGCGAGTCAAGACACCTATATTTGTATCCCCCCCCCCGCGCCAGCACA
CACCACGACAGGACGGGACATGCTAGAGCTTGAACCGGACGAAGATCCTA
CCCACCAGGCGTCTGACAAGCCACGAGTCTCAGAGCGCTTCGTTCGACAT
ATCTTGTTATGTCAGGGTTCCGCAGATTGCTCCAGTACAAAAAATAGATT
TTGCGTTATTTATTGCAAGATAGAACTCATTTTTCCCGTCTAGGTCCCTT
TGCAAGAGTGTACACTGCGTGTATGTATGATCGCGCTGTAGGGCTATACT
TTCAGTAGGACTAGACGCTGTTGGTTGGGTCAGCGGTGGAGGCTGAAAGC
ATGTTCGTTTTATCATTTATTGCATGATTGAACTCATTTTCCCCGGTCAG
GTCCCTGTACACCATCTGTAGACTATATCCCCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11:550444..553426-

>mRNA_A-nodosum_M_contig11.49.1 ID=mRNA_A-nodosum_M_contig11.49.1|Name=mRNA_A-nodosum_M_contig11.49.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=345bp|location=Sequence derived from alignment at A-nodosum_M_contig11:550444..553426- (Ascophyllum nodosum dioecious)
ATGGATGGGCTCGACATTGTGGTTGTGGTGCGGTGCTCGGCCAACGGTGG
AGGAAGATTGCAACGATATGTCTTGACTGTGATAGCGGAGTATGACTTTA
CGACACGCCATCCATGGTGGTGCAAAACATTAAATACGTACGTACAGGAA
GCGAGGAATGCCGCGATCAAGGCTCAGGGACACAGTGCCAGTGCCGGCGA
GGGTGATTTGAAGGCGACGAGGGCAGGATTCAACAAACTCCTAGCATTGT
GGGTGAATCGCAAGCGAAACGCCATGGACGTAGTTGACATGATCGCCGAT
GGAATGGATATGAAGCCGAAAGTTATTATGGACGGGACATGCTAG
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