mRNA_A-nodosum_M_contig11.30.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11.30.1
Unique NamemRNA_A-nodosum_M_contig11.30.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig11.30.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 6.300e-43
Identity = 75/121 (61.98%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    1 YKGPFLSGQVDLTTVAGAEYITFSASNIPPGEATIKRIGLATRAFPGSHTANDVQYWLKKITQEWFSELVGNRVEPSDVFLAFTVDQGLNVVNAVEALNVPVVVCNAHRLNTVVCWMLGIA 363
            Y GPFL  Q+DLTT AG EYITF+ + +  G+  + RI LA RAFPGSHTA D+Q W++K+T E+FS  +G  V+PSDVFLAFTVDQG N++NA  AL V VV CN HRLNT V W LGIA
Sbjct:   88 YSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIA 208          
BLAST of mRNA_A-nodosum_M_contig11.30.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 1.670e-42
Identity = 75/121 (61.98%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    1 YKGPFLSGQVDLTTVAGAEYITFSASNIPPGEATIKRIGLATRAFPGSHTANDVQYWLKKITQEWFSELVGNRVEPSDVFLAFTVDQGLNVVNAVEALNVPVVVCNAHRLNTVVCWMLGIA 363
            Y GPFL  Q+DLTT AG EYITF+ + +  G+  + RI LA RAFPGSHTA D+Q W++K+T E+FS  +G  V+PSDVFLAFTVDQG N++NA  AL V VV CN HRLNT V W LGIA
Sbjct:  283 YSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIA 403          
BLAST of mRNA_A-nodosum_M_contig11.30.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 3.100e-42
Identity = 74/121 (61.16%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    1 YKGPFLSGQVDLTTVAGAEYITFSASNIPPGEATIKRIGLATRAFPGSHTANDVQYWLKKITQEWFSELVGNRVEPSDVFLAFTVDQGLNVVNAVEALNVPVVVCNAHRLNTVVCWMLGIA 363
            Y G FL  Q+DLTTVAG EYITF+ S +  G+  + R+ LATRAFPGSHTA+D++ W++ +T E+F++L+G  VE  DVFLAFTVDQG NVVNA  AL VPVV CN HR+N+ V W LGIA
Sbjct:   92 YGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIA 212          
BLAST of mRNA_A-nodosum_M_contig11.30.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 5.710e-42
Identity = 73/121 (60.33%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    1 YKGPFLSGQVDLTTVAGAEYITFSASNIPPGEATIKRIGLATRAFPGSHTANDVQYWLKKITQEWFSELVGNRVEPSDVFLAFTVDQGLNVVNAVEALNVPVVVCNAHRLNTVVCWMLGIA 363
            Y G FL  Q+DLTTVAG EYITF+ S +  G   + R+ LA RAFPG+HTA+D+  W++++T+E+F++ +G  VEP DVFLAFTVDQG NVVNA +AL VPVV CN HR+NT V W LGIA
Sbjct:  281 YSGAFLGAQLDLTTVAGEEYITFTVSYVEKGSTDVTRVALACRAFPGTHTADDISPWIEELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIA 401          
BLAST of mRNA_A-nodosum_M_contig11.30.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.110e-41
Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    1 YKGPFLSGQVDLTTVAGAEYITFSASNIPPGEATIKRIGLATRAFPGSHTANDVQYWLKKITQEWFSELVGNRVEPSDVFLAFTVDQGLNVVNAVEALNVPVVVCNAHRLNTVVCWMLGIA 363
            Y G FL  Q+DLTTVAG EYITF+ S +  G+  + R+ LATRAFPGSHTA+D++ W++ +T E+ ++L+G  VE  DVFLAFTVDQG NVVNA  AL VPVV CN HR+N+ V W LGIA
Sbjct:   92 YGGAFLGAQLDLTTVAGEEYITFAVSYVKKGDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIA 212          
BLAST of mRNA_A-nodosum_M_contig11.30.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.190e-39
Identity = 76/128 (59.38%), Postives = 92/128 (71.88%), Query Frame = 1
Query:    1 YKGPFLSGQVDLTTVAGAEYITFSASNIPPGEATIKRIGLATRAFPGSHTANDVQYWLKK--------ITQEWFSELVGNRVEPSDVFLAFTVDQGLNVVNAVEALNVPVVVCNAHRLNTVVCWMLGI 360
            Y GPFL  Q+DLTTVA  EYITFS S I     TI R+GLATRAFPGSHTA D++ W++K        +T E+F++++G  V+P DVFLAFTVDQG NVVNA   L+V V+ CNAHRLN+V  W LGI
Sbjct:  263 YVGPFLGAQLDLTTVANEEYITFSVSYIAEAATTITRVGLATRAFPGSHTAADIEPWIEKASFTTFKLLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGI 390          
BLAST of mRNA_A-nodosum_M_contig11.30.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.080e-38
Identity = 70/122 (57.38%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    1 YKGPFLSGQVDLTTVAGAEYITFSASNIPPGEAT-IKRIGLATRAFPGSHTANDVQYWLKKITQEWFSELVGNRVEPSDVFLAFTVDQGLNVVNAVEALNVPVVVCNAHRLNTVVCWMLGIA 363
            Y G FL   +DLTTVA  EYITF+ S +  G+   + R+ LATRAFPGSHTA D++ W++ +T E+F +L+G  V+P DVFL FTVDQG N+VNA  AL VPVV CN HR+N+ V W LGIA
Sbjct:   88 YGGAFLGAHLDLTTVANEEYITFTVSYVKKGKTDDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIA 209          
BLAST of mRNA_A-nodosum_M_contig11.30.1 vs. uniprot
Match: D7G7X8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X8_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 7.580e-16
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   91 GEATIKRIGLATRAFPGSHTANDVQYWLKKITQEWFSELVGNRVEPSDVFLAFTVDQGLNVVNAVEALNVPVVVCNAHRLNTVVCWMLGIA 363
            G++    + LAT+ F G HT   ++ WL+++T   F  +V   V PSDV++A TVDQGLNVVNA ++L +P + C  HR+++ V W +G++
Sbjct:   53 GDSLPVHLSLATKVFRGQHTQATIKTWLEQLTTGVFQSIVP-AVVPSDVYVAATVDQGLNVVNACKSLGIPTIPCLGHRIHSSVMWGIGVS 142          
BLAST of mRNA_A-nodosum_M_contig11.30.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.680e-15
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  178 KITQEWFSELVGNRVEPSDVFLAFTVDQGLNVVNAVEALNVPVVVCNAHRLNTVVCWMLGIA 363
            ++T+E+F   +G  VEPSDVFLAFTVDQG NVVNA  AL V VV CN HR+N+ V W LGIA
Sbjct:    6 QLTKEYFGGFMGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIA 67          
BLAST of mRNA_A-nodosum_M_contig11.30.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.440e-15
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 YKGPFLSGQVDLTTVAGAEYITFSASNIPPGEATIKRIGLATRAFPGSHTANDVQYWLKK 180
            Y GPFL  Q+DLTT AG EYITF+ + +  G+  + RI LA RAFPGSHTA D+Q W++K
Sbjct: 1367 YSGPFLGAQLDLTTAAGEEYITFTVTFVKKGDTDMTRIALAARAFPGSHTAEDIQPWIEK 1426          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE6.300e-4361.98Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.670e-4261.98Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JQI6_9PHAE3.100e-4261.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE5.710e-4260.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE2.110e-4160.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ52_9PHAE1.190e-3959.38Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JXV5_9PHAE1.080e-3857.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7X8_ECTSI7.580e-1641.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDJ6_9PHAE1.680e-1564.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVP4_9PHAE3.440e-1558.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11contigA-nodosum_M_contig11:373345..373882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size365
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866486.1337311-CDS-A-nodosum_M_contig11:373344..3735271680866486.1337311-CDS-A-nodosum_M_contig11:373344..373527Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 373345..373527 -
1680866486.1435678-CDS-A-nodosum_M_contig11:373702..3738821680866486.1435678-CDS-A-nodosum_M_contig11:373702..373882Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11 373703..373882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11.30.1prot_A-nodosum_M_contig11.30.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11 373345..373882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11.30.1

>prot_A-nodosum_M_contig11.30.1 ID=prot_A-nodosum_M_contig11.30.1|Name=mRNA_A-nodosum_M_contig11.30.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=121bp
YKGPFLSGQVDLTTVAGAEYITFSASNIPPGEATIKRIGLATRAFPGSHT
ANDVQYWLKKITQEWFSELVGNRVEPSDVFLAFTVDQGLNVVNAVEALNV
PVVVCNAHRLNTVVCWMLGIA
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mRNA from alignment at A-nodosum_M_contig11:373345..373882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11.30.1 ID=mRNA_A-nodosum_M_contig11.30.1|Name=mRNA_A-nodosum_M_contig11.30.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=538bp|location=Sequence derived from alignment at A-nodosum_M_contig11:373345..373882- (Ascophyllum nodosum dioecious)
TACAAGGGACCTTTCCTTTCGGGACAGGTTGACTTGACAACAGTGGCCGG CGCTGAGTACATAACATTTTCGGCGTCAAACATTCCTCCCGGCGAGGCGA CCATAAAGCGCATTGGACTCGCTACAAGGGCATTCCCCGGGTCGCACACC GCGAACGACGTGCAATATTGGTTGAAGAAGGTGAGGAACGCGTCCGGAAG AGAGTGAAGTACAATATAAAAATTAAATCTAGATGGCAATGTGGTTATCG TTTGTGGATGCTTTCACGGGCTTAAAAAAGAAAAGTGGGATATTCCGCGT TCACCTCATTGAAGCCACGCTTACTTGCATTTGTGCCCCTTGCTTGGCTT TACAGATCACTCAGGAGTGGTTCTCAGAACTCGTGGGAAACAGGGTTGAG CCCTCGGACGTCTTCCTTGCTTTTACTGTGGACCAAGGCCTTAACGTGGT GAACGCGGTCGAAGCTCTGAACGTCCCGGTAGTAGTGTGCAACGCACACC GCTTGAACACGGTGGTTTGCTGGATGCTCGGTATTGCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11:373345..373882-

>mRNA_A-nodosum_M_contig11.30.1 ID=mRNA_A-nodosum_M_contig11.30.1|Name=mRNA_A-nodosum_M_contig11.30.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=363bp|location=Sequence derived from alignment at A-nodosum_M_contig11:373345..373882- (Ascophyllum nodosum dioecious)
TACAAGGGACCTTTCCTTTCGGGACAGGTTGACTTGACAACAGTGGCCGG
CGCTGAGTACATAACATTTTCGGCGTCAAACATTCCTCCCGGCGAGGCGA
CCATAAAGCGCATTGGACTCGCTACAAGGGCATTCCCCGGGTCGCACACC
GCGAACGACGTGCAATATTGGTTGAAGAAGATCACTCAGGAGTGGTTCTC
AGAACTCGTGGGAAACAGGGTTGAGCCCTCGGACGTCTTCCTTGCTTTTA
CTGTGGACCAAGGCCTTAACGTGGTGAACGCGGTCGAAGCTCTGAACGTC
CCGGTAGTAGTGTGCAACGCACACCGCTTGAACACGGTGGTTTGCTGGAT
GCTCGGTATTGCC
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