mRNA_A-nodosum_M_contig10980.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10980.1.1
Unique NamemRNA_A-nodosum_M_contig10980.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10980.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10980contigA-nodosum_M_contig10980:374..888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size212
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866483.798533-CDS-A-nodosum_M_contig10980:373..4691680866483.798533-CDS-A-nodosum_M_contig10980:373..469Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10980 374..469 -
1680866483.8107533-CDS-A-nodosum_M_contig10980:774..8881680866483.8107533-CDS-A-nodosum_M_contig10980:774..888Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10980 775..888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10980.1.1prot_A-nodosum_M_contig10980.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10980 374..888 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10980.1.1

>prot_A-nodosum_M_contig10980.1.1 ID=prot_A-nodosum_M_contig10980.1.1|Name=mRNA_A-nodosum_M_contig10980.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=70bp
MSYDDNKNSVLILAAINKSLDVFGAVMSAIENDVTHQEMETLLTQRGSKD
WSLLSAAAVNENKASFKAVL
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mRNA from alignment at A-nodosum_M_contig10980:374..888-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10980.1.1 ID=mRNA_A-nodosum_M_contig10980.1.1|Name=mRNA_A-nodosum_M_contig10980.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=515bp|location=Sequence derived from alignment at A-nodosum_M_contig10980:374..888- (Ascophyllum nodosum dioecious)
ATGTCCTACGATGATAACAAAAACTCTGTCCTCATCTTGGCGGCGATAAA
CAAGAGCCTGGATGTGTTCGGGGCGGTAATGTCCGCTATCGAGAACGATG
TCACACACCAAGAGGTACGAAACAACAACGATTCGGATTTGATCCGTCAC
ATGTTCGAGGGTCGGATGCGCTCTTGGCCAGCTCTCGATGCCGAACTCAA
CGCGGCCTTCTTGATAGACGATAGATGCCAACCCTAACTTATTTTGCCAT
AATACTTCGTAGTAGGCATGCAACCATGGTGGAAAGCTTCTACTCACGGC
AATCCCATCCACCACACTCCACGCCCCACTAAGCCGATACCGCGTCAGCA
TCCGTGACATAGTATCCTCGTGGCCGTACACTCCCGTGACATTGGCCAAC
TCGACACATGGAGACGCAGATGGAGACATTGCTCACTCAACGGGGTTCCA
AGGACTGGTCGTTGCTGTCTGCGGCGGCTGTAAACGAGAACAAGGCTTCT
TTCAAGGCTGTTCTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10980:374..888-

>mRNA_A-nodosum_M_contig10980.1.1 ID=mRNA_A-nodosum_M_contig10980.1.1|Name=mRNA_A-nodosum_M_contig10980.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at A-nodosum_M_contig10980:374..888- (Ascophyllum nodosum dioecious)
ATGTCCTACGATGATAACAAAAACTCTGTCCTCATCTTGGCGGCGATAAA
CAAGAGCCTGGATGTGTTCGGGGCGGTAATGTCCGCTATCGAGAACGATG
TCACACACCAAGAGATGGAGACATTGCTCACTCAACGGGGTTCCAAGGAC
TGGTCGTTGCTGTCTGCGGCGGCTGTAAACGAGAACAAGGCTTCTTTCAA
GGCTGTTCTT
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