mRNA_A-nodosum_M_contig10974.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10974.1.1
Unique NamemRNA_A-nodosum_M_contig10974.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10974.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10974contigA-nodosum_M_contig10974:8128..8326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size175
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866482.5550683-UTR-A-nodosum_M_contig10974:8127..81541680866482.5550683-UTR-A-nodosum_M_contig10974:8127..8154Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10974 8128..8154 +
1680866482.5838976-UTR-A-nodosum_M_contig10974:8325..83261680866482.5838976-UTR-A-nodosum_M_contig10974:8325..8326Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10974 8326..8326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866482.5670948-CDS-A-nodosum_M_contig10974:8154..82011680866482.5670948-CDS-A-nodosum_M_contig10974:8154..8201Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10974 8155..8201 +
1680866482.5756538-CDS-A-nodosum_M_contig10974:8225..83251680866482.5756538-CDS-A-nodosum_M_contig10974:8225..8325Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10974 8226..8325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10974.1.1prot_A-nodosum_M_contig10974.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10974 8155..8325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10974.1.1

>prot_A-nodosum_M_contig10974.1.1 ID=prot_A-nodosum_M_contig10974.1.1|Name=mRNA_A-nodosum_M_contig10974.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=49bp
MTTTRISLPRTDPQPVYVSTQQRIEWRSVSWVVEPLNWHHREILDIIQ*
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mRNA from alignment at A-nodosum_M_contig10974:8128..8326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10974.1.1 ID=mRNA_A-nodosum_M_contig10974.1.1|Name=mRNA_A-nodosum_M_contig10974.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=199bp|location=Sequence derived from alignment at A-nodosum_M_contig10974:8128..8326+ (Ascophyllum nodosum dioecious)
CTGCGACTTCCGGAAGAATCTACTATTATGACTACAACACGAATATCTCT
ACCTCGGACAGACCCCCAACCCGTCCCACACCGTCTGCTCCGCCGATATT
ACGTGAGTACACAGCAGCGCATCGAGTGGCGCTCGGTGTCGTGGGTTGTT
GAACCGTTGAACTGGCATCATCGCGAAATCCTTGACATTATCCAGTAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10974:8128..8326+

>mRNA_A-nodosum_M_contig10974.1.1 ID=mRNA_A-nodosum_M_contig10974.1.1|Name=mRNA_A-nodosum_M_contig10974.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=147bp|location=Sequence derived from alignment at A-nodosum_M_contig10974:8128..8326+ (Ascophyllum nodosum dioecious)
ATGACTACAACACGAATATCTCTACCTCGGACAGACCCCCAACCCGTTTA
CGTGAGTACACAGCAGCGCATCGAGTGGCGCTCGGTGTCGTGGGTTGTTG
AACCGTTGAACTGGCATCATCGCGAAATCCTTGACATTATCCAGTAA
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