mRNA_A-nodosum_M_contig1097.9.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1097.9.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 208 bits (530), Expect = 1.180e-67 Identity = 110/124 (88.71%), Postives = 116/124 (93.55%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKKTTSSSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVANK 372
M+GKGKGGRG KK+T+ S+KAGLQFPVGR+GRFLK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_A-nodosum_M_contig1097.9.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 206 bits (523), Expect = 2.110e-66 Identity = 110/120 (91.67%), Postives = 114/120 (95.00%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKKTTSSSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M+GKGKGGRG KK+TS SSKAGLQFPV RIGR+LK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_A-nodosum_M_contig1097.9.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 206 bits (525), Expect = 4.000e-66 Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKKTTSSSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M+GKGKGGRG KK+T+ S+KAGLQFPVGR+GRFLK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 46 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 163
BLAST of mRNA_A-nodosum_M_contig1097.9.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 206 bits (523), Expect = 1.080e-65 Identity = 110/120 (91.67%), Postives = 114/120 (95.00%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKKTTSSSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M+GKGKGGRG KK+TS SSKAGLQFPV RIGR+LK GKY+ RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 52 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_A-nodosum_M_contig1097.9.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA) HSP 1 Score: 202 bits (514), Expect = 4.090e-65 Identity = 105/124 (84.68%), Postives = 115/124 (92.74%), Query Frame = 1
Query: 1 MTGKGKGGRG-DKKKTTSSSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVAN 369
M GKGKGGRG + KK+TS SSKAGLQFPV R+GRFLK G+Y++RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK A+
Sbjct: 1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKKTAS 124
BLAST of mRNA_A-nodosum_M_contig1097.9.1 vs. uniprot
Match: B7FZS7_PHATC (Histone H2A n=2 Tax=Naviculales TaxID=38748 RepID=B7FZS7_PHATC) HSP 1 Score: 202 bits (514), Expect = 5.480e-65 Identity = 102/118 (86.44%), Postives = 113/118 (95.76%), Query Frame = 1
Query: 7 GKGKGGRGDKKKTTSSSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
GKGKGGRGDKK+TTSSSSKAGLQFPVGRIGR+L+ GKY+ R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIA+GGVLPNIHA+LLPKK
Sbjct: 10 GKGKGGRGDKKQTTSSSSKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGNVTIAAGGVLPNIHAILLPKK 127
BLAST of mRNA_A-nodosum_M_contig1097.9.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 201 bits (511), Expect = 8.470e-65 Identity = 105/120 (87.50%), Postives = 112/120 (93.33%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKKTTSSSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M+GKGKGGRG KK TS S+KAGLQFPVGRIGRF+K GKYS RVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG--KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_A-nodosum_M_contig1097.9.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 198 bits (503), Expect = 2.780e-63 Identity = 102/122 (83.61%), Postives = 114/122 (93.44%), Query Frame = 1
Query: 7 GKGKGGRGDKKKTTSSSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVANK 372
GKGKGGRGDKK S S+KAGLQFPVGR+GRFLK G+Y++RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RIIPRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK +K
Sbjct: 5 GKGKGGRGDKK-AVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125
BLAST of mRNA_A-nodosum_M_contig1097.9.1 vs. uniprot
Match: A0A835ZBB6_9STRA (Histone H2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB6_9STRA) HSP 1 Score: 197 bits (500), Expect = 6.130e-63 Identity = 103/125 (82.40%), Postives = 113/125 (90.40%), Query Frame = 1
Query: 1 MTGKGKGGRG-DKKKTTSSSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVANK 372
M GKGKGGRG + KK TS S+KAGLQFPV R+GR+LK G+Y+ RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHIQLAVRNDEELN+LLG VTIASGGVLPNIHAVLLPKK A K
Sbjct: 1 MAGKGKGGRGAEGKKITSQSAKAGLQFPVARMGRYLKQGRYADRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNRLLGNVTIASGGVLPNIHAVLLPKKTAAK 125
BLAST of mRNA_A-nodosum_M_contig1097.9.1 vs. uniprot
Match: A0A448YXB3_9STRA (Histone H2A n=5 Tax=Bacillariophyta TaxID=2836 RepID=A0A448YXB3_9STRA) HSP 1 Score: 196 bits (499), Expect = 8.430e-63 Identity = 101/120 (84.17%), Postives = 111/120 (92.50%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKKTTSSSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
M+GKGKGGRG KK + SSS KAGLQFPVGRIGR+L+ GKY+ R+GAGAPVYLA+VLEYL AE+LELAGNAARDNKK+RIIPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGAKKGSVSSSQKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLASVLEYLCAEILELAGNAARDNKKSRIIPRHITLAVKNDEELNKLLGNVTIASGGVLPNIHAVLLPKK 120 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1097.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1097.9.1 >prot_A-nodosum_M_contig1097.9.1 ID=prot_A-nodosum_M_contig1097.9.1|Name=mRNA_A-nodosum_M_contig1097.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=125bp MTGKGKGGRGDKKKTTSSSSKAGLQFPVGRIGRFLKAGKYSQRVGAGAPVback to top mRNA from alignment at A-nodosum_M_contig1097:183094..183468- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1097.9.1 ID=mRNA_A-nodosum_M_contig1097.9.1|Name=mRNA_A-nodosum_M_contig1097.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:183094..183468- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1097:183094..183468- >mRNA_A-nodosum_M_contig1097.9.1 ID=mRNA_A-nodosum_M_contig1097.9.1|Name=mRNA_A-nodosum_M_contig1097.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=375bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:183094..183468- (Ascophyllum nodosum dioecious)back to top |