mRNA_A-nodosum_M_contig1097.29.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1097.29.1
Unique NamemRNA_A-nodosum_M_contig1097.29.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.29.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 251 bits (640), Expect = 6.080e-84
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   13 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.29.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 249 bits (637), Expect = 2.130e-83
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   13 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.29.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 249 bits (636), Expect = 2.480e-83
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   13 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.29.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 249 bits (637), Expect = 2.790e-83
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   13 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.29.1 vs. uniprot
Match: A0A3P9AWS4_9CICH (Histone H3 n=4 Tax=Bilateria TaxID=33213 RepID=A0A3P9AWS4_9CICH)

HSP 1 Score: 248 bits (634), Expect = 5.910e-83
Identity = 132/139 (94.96%), Postives = 137/139 (98.56%), Query Frame = 1 
Query:    4 HQNMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            H+ MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    3 HERMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 141
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.29.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 251 bits (640), Expect = 7.090e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   13 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   74 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.29.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 1.430e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   13 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.29.1 vs. uniprot
Match: A0A164UA40_9CRUS (Histone H3 n=2 Tax=Eumetazoa TaxID=6072 RepID=A0A164UA40_9CRUS)

HSP 1 Score: 248 bits (632), Expect = 1.610e-82
Identity = 132/140 (94.29%), Postives = 138/140 (98.57%), Query Frame = 1 
Query:    1 KHQNMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            + +NMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   11 RQRNMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 150
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.29.1 vs. uniprot
Match: A0A2J7QQS7_9NEOP (Histone H3 (Fragment) n=5 Tax=Bilateria TaxID=33213 RepID=A0A2J7QQS7_9NEOP)

HSP 1 Score: 247 bits (631), Expect = 1.640e-82
Identity = 132/137 (96.35%), Postives = 136/137 (99.27%), Query Frame = 1 
Query:   10 NMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            NMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    4 NMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 140
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.29.1 vs. uniprot
Match: A0A672ZXG2_9TELE (Histone H3 n=6 Tax=Clupeocephala TaxID=186625 RepID=A0A672ZXG2_9TELE)

HSP 1 Score: 247 bits (631), Expect = 1.700e-82
Identity = 132/139 (94.96%), Postives = 136/139 (97.84%), Query Frame = 1 
Query:    4 HQNMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 420
            H  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    3 HPTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 141
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1097.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GZ05_9STRA6.080e-8499.26Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A6V1P6C6_HETAK2.130e-8398.53Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A1Z5K8H0_FISSO2.480e-8398.53Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA2.790e-8398.53Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
A0A3P9AWS4_9CICH5.910e-8394.96Histone H3 n=4 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
K0S7I6_THAOC7.090e-8399.26Histone domain-containing protein n=8 Tax=Bacillar... [more]
D7G4I9_ECTSI1.430e-8298.53Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
A0A164UA40_9CRUS1.610e-8294.29Histone H3 n=2 Tax=Eumetazoa TaxID=6072 RepID=A0A1... [more]
A0A2J7QQS7_9NEOP1.640e-8296.35Histone H3 (Fragment) n=5 Tax=Bilateria TaxID=3321... [more]
A0A672ZXG2_9TELE1.700e-8294.96Histone H3 n=6 Tax=Clupeocephala TaxID=186625 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1097contigA-nodosum_M_contig1097:252730..253152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWI7
PFAMsHistone
Model size423
Max annot lvl2759|Eukaryota
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue1.71e-84
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size411
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866482.451908-UTR-A-nodosum_M_contig1097:252729..2527411680866482.451908-UTR-A-nodosum_M_contig1097:252729..252741Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1097 252730..252741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866482.4617398-CDS-A-nodosum_M_contig1097:252741..2531521680866482.4617398-CDS-A-nodosum_M_contig1097:252741..253152Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1097 252742..253152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1097.29.1prot_A-nodosum_M_contig1097.29.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1097 252742..253152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1097.29.1

>prot_A-nodosum_M_contig1097.29.1 ID=prot_A-nodosum_M_contig1097.29.1|Name=mRNA_A-nodosum_M_contig1097.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at A-nodosum_M_contig1097:252730..253152+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1097.29.1 ID=mRNA_A-nodosum_M_contig1097.29.1|Name=mRNA_A-nodosum_M_contig1097.29.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=423bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:252730..253152+ (Ascophyllum nodosum dioecious)
AAACATCAAAACATGGCTCGCACCAAACAGACCGCTCGGAAGTCCACCGG
AGGCAAGGCCCCCCGCAAGCAGCTCGCCACGAAGGCAGCACGCAAGTCTG
CTCCTGCTACTGGCGGTGTGAAGAAACCCCACCGTTACAGGCCCGGTACG
GTTGCCCTACGCGAGATTCGCCGGTACCAAAAGTCGACGGAGCTTCTTAT
CCGCAAGCTGCCGTTCCAGCGTCTAGTGCGTGAGATCGCGCAGGACTTCA
AAAGCGACTTGCGTTTCCAAGGCTCCGCTGTGCTAGCCCTGCAAGAGGCG
GCTGAGGCGTACCTGGTGGGTCTGTTTGAAGACACTAATCTGTGCGCCAT
CCACGCCAAGCGTGTAACCATCATGCCCAAGGATATTCAGCTGGCTCGGC
GCATTCGAGGCGAGCGGTCTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1097:252730..253152+

>mRNA_A-nodosum_M_contig1097.29.1 ID=mRNA_A-nodosum_M_contig1097.29.1|Name=mRNA_A-nodosum_M_contig1097.29.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=411bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:252730..253152+ (Ascophyllum nodosum dioecious)
ATGGCTCGCACCAAACAGACCGCTCGGAAGTCCACCGGAGGCAAGGCCCC
CCGCAAGCAGCTCGCCACGAAGGCAGCACGCAAGTCTGCTCCTGCTACTG
GCGGTGTGAAGAAACCCCACCGTTACAGGCCCGGTACGGTTGCCCTACGC
GAGATTCGCCGGTACCAAAAGTCGACGGAGCTTCTTATCCGCAAGCTGCC
GTTCCAGCGTCTAGTGCGTGAGATCGCGCAGGACTTCAAAAGCGACTTGC
GTTTCCAAGGCTCCGCTGTGCTAGCCCTGCAAGAGGCGGCTGAGGCGTAC
CTGGTGGGTCTGTTTGAAGACACTAATCTGTGCGCCATCCACGCCAAGCG
TGTAACCATCATGCCCAAGGATATTCAGCTGGCTCGGCGCATTCGAGGCG
AGCGGTCTTGA
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