mRNA_A-nodosum_M_contig1097.23.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1097.23.1
Unique NamemRNA_A-nodosum_M_contig1097.23.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1097.23.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 1.480e-69
Identity = 112/116 (96.55%), Postives = 113/116 (97.41%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAK PKKAGDKK+ NKR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.23.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 196 bits (499), Expect = 6.100e-63
Identity = 101/116 (87.07%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAK PKKAGDK K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.23.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 193 bits (490), Expect = 9.440e-62
Identity = 103/117 (88.03%), Postives = 108/117 (92.31%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGD-KKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AK PKKA D KKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.23.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 192 bits (487), Expect = 2.790e-61
Identity = 101/118 (85.59%), Postives = 110/118 (93.22%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGDKKKANK--RIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAK PKK G+K K  K  RIESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.23.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 191 bits (485), Expect = 4.800e-61
Identity = 98/116 (84.48%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AK PKKAG K+  NKR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.23.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 193 bits (490), Expect = 6.400e-60
Identity = 103/117 (88.03%), Postives = 108/117 (92.31%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGD-KKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AK PKKA D KKK  KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.23.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 187 bits (474), Expect = 2.430e-59
Identity = 97/116 (83.62%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK+SAK PKKA    K+ KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.23.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 9.550e-58
Identity = 97/116 (83.62%), Postives = 108/116 (93.10%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+A  PKKAG K ++ KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGK-RSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.23.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 182 bits (462), Expect = 1.870e-57
Identity = 99/120 (82.50%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:    1 MAKTPSKKS-AKVPKKA--GDKKK-ANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK++ AK  KKA  GDKKK + KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.23.1 vs. uniprot
Match: A0A7S2U5X6_9STRA (Histone H2B (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5X6_9STRA)

HSP 1 Score: 182 bits (461), Expect = 2.330e-57
Identity = 96/112 (85.71%), Postives = 104/112 (92.86%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTK 336
            MAKTPSKKSA VPKKA   K+  KR+ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTK
Sbjct:    6 MAKTPSKKSA-VPKKASTGKRNKKRVESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTK 116
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1097.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI1.480e-6996.55Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA6.100e-6387.07Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA9.440e-6288.03Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA2.790e-6185.59Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
H2B_OLILU4.800e-6184.48Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A836CJT3_9STRA6.400e-6088.03Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
B7FWR8_PHATC2.430e-5983.62Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA9.550e-5883.62Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
B8BX20_THAPS1.870e-5782.50Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A7S2U5X6_9STRA2.330e-5785.71Histone H2B (Fragment) n=1 Tax=Attheya septentrion... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1097contigA-nodosum_M_contig1097:232073..232423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWI8
PFAMsHistone
Model size351
Max annot lvl2759|Eukaryota
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue2.42e-70
EggNOG OGsKOG1744@1|root,KOG1744@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size351
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866482.277996-CDS-A-nodosum_M_contig1097:232072..2324231680866482.277996-CDS-A-nodosum_M_contig1097:232072..232423Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1097 232073..232423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1097.23.1prot_A-nodosum_M_contig1097.23.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1097 232073..232423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1097.23.1

>prot_A-nodosum_M_contig1097.23.1 ID=prot_A-nodosum_M_contig1097.23.1|Name=mRNA_A-nodosum_M_contig1097.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=117bp
MAKTPSKKSAKVPKKAGDKKKANKRIESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
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mRNA from alignment at A-nodosum_M_contig1097:232073..232423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1097.23.1 ID=mRNA_A-nodosum_M_contig1097.23.1|Name=mRNA_A-nodosum_M_contig1097.23.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:232073..232423+ (Ascophyllum nodosum dioecious)
ATGGCCAAGACCCCCTCAAAGAAGTCCGCCAAAGTGCCCAAGAAGGCCGG
CGACAAGAAGAAAGCCAACAAGAGGATCGAGTCCTATTCGTCTTACATTT
ACAAGGTGCTCAAACAAGTTCACCCAGATACGGGTATCTCGAAGCGCGGC
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGTGTGGCCGG
CGAGTCGGGCAAGCTCACCCGCTATAACAAGAAAGCTACCCTGTCCTCAC
GCGAGGTGCAGACGGCTGTGCGCCTGATGCTTCCAGGAGAGCTCGCCAAG
CATGCCGTGTCTGAGGGCACGAAGGCCGTCACAAAATTCACTTCATCTTG
A
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1097:232073..232423+

>mRNA_A-nodosum_M_contig1097.23.1 ID=mRNA_A-nodosum_M_contig1097.23.1|Name=mRNA_A-nodosum_M_contig1097.23.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=351bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:232073..232423+ (Ascophyllum nodosum dioecious)
ATGGCCAAGACCCCCTCAAAGAAGTCCGCCAAAGTGCCCAAGAAGGCCGG
CGACAAGAAGAAAGCCAACAAGAGGATCGAGTCCTATTCGTCTTACATTT
ACAAGGTGCTCAAACAAGTTCACCCAGATACGGGTATCTCGAAGCGCGGC
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGTGTGGCCGG
CGAGTCGGGCAAGCTCACCCGCTATAACAAGAAAGCTACCCTGTCCTCAC
GCGAGGTGCAGACGGCTGTGCGCCTGATGCTTCCAGGAGAGCTCGCCAAG
CATGCCGTGTCTGAGGGCACGAAGGCCGTCACAAAATTCACTTCATCTTG
A
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