mRNA_A-nodosum_M_contig1097.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1097.17.1
Unique NamemRNA_A-nodosum_M_contig1097.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1097.17.1 vs. uniprot
Match: A0A453MV18_AEGTS (Histone domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MV18_AEGTS)

HSP 1 Score: 205 bits (522), Expect = 1.370e-65
Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = 1 
Query:    1 GSHQTDRSEVHWRQGPPQAARHEGSTQVC-SCYGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNNLCAIHAKRITIMPKDIQLARRNRGERS 405
            G+++ DRS+VH RQGPPQAARH    +   +  GVKKPHRYRPGTVALREIR+YQKST+LLIRKLPFQRLVREIAQDFK+DLRFQ  AVLALQEAAEAYLVGLFEDTN LCAIHAKR+TIMPKDIQLARR RGER+
Sbjct:   34 GAYEADRSQVHRRQGPPQAARHHHRAKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LCAIHAKRVTIMPKDIQLARRIRGERA 168
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BLAST of mRNA_A-nodosum_M_contig1097.17.1 vs. uniprot
Match: A0A453MV92_AEGTS (Histone domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MV92_AEGTS)

HSP 1 Score: 201 bits (510), Expect = 4.040e-63
Identity = 110/148 (74.32%), Postives = 120/148 (81.08%), Query Frame = 1 
Query:    1 GSHQTDRSEVHWRQGPPQAARHEGSTQVCSCY-------------GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNNLCAIHAKRITIMPKDIQLARRNRGERS 405
            G+++ DRS+VH RQGPPQAARH         +             GVKKPHRYRPGTVALREIR+YQKST+LLIRKLPFQRLVREIAQDFK+DLRFQ  AVLALQEAAEAYLVGLFEDTN LCAIHAKR+TIMPKDIQLARR RGER+
Sbjct:   68 GAYEADRSQVHRRQGPPQAARHHHRAVSIVAFSFQAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LCAIHAKRVTIMPKDIQLARRIRGERA 214
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BLAST of mRNA_A-nodosum_M_contig1097.17.1 vs. uniprot
Match: K0S5H6_THAOC (Histone domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S5H6_THAOC)

HSP 1 Score: 196 bits (499), Expect = 4.220e-62
Identity = 109/136 (80.15%), Postives = 116/136 (85.29%), Query Frame = 1 
Query:    1 GSHQTDRSEVHWRQGP-PQAARHEGSTQVCSCYGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNNLCAIHAKRITIMPKDIQLARRNRGERS 405
            G ++ DR +VH R+GP  Q A         +  GVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTN LCAIHAKR+TIMPKDIQLARR RGERS
Sbjct:   33 GPNKADRPQVHRRKGPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTN-LCAIHAKRVTIMPKDIQLARRIRGERS 167
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BLAST of mRNA_A-nodosum_M_contig1097.17.1 vs. uniprot
Match: A0A4V5ZY76_STECR (Histone domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4V5ZY76_STECR)

HSP 1 Score: 196 bits (497), Expect = 1.420e-61
Identity = 108/137 (78.83%), Postives = 119/137 (86.86%), Query Frame = 1 
Query:    1 GSHQTDRSEVHWRQGPPQAARHEGSTQVCSCYG--VKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNNLCAIHAKRITIMPKDIQLARRNRGERS 405
            GSHQ + S+++ R+G PQAA H+  +QV        KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQE+AEAYLVGLFEDTN LCAIHAKR+TIMPKDIQLARR RGER+
Sbjct:   48 GSHQANCSQINRRKGSPQAAGHQSRSQVGPRQRRRQKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQESAEAYLVGLFEDTN-LCAIHAKRVTIMPKDIQLARRIRGERA 183
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BLAST of mRNA_A-nodosum_M_contig1097.17.1 vs. uniprot
Match: A0A437DNH4_ORYJA (Histone domain-containing protein n=1 Tax=Oryzias javanicus TaxID=123683 RepID=A0A437DNH4_ORYJA)

HSP 1 Score: 195 bits (495), Expect = 2.080e-61
Identity = 105/136 (77.21%), Postives = 118/136 (86.76%), Query Frame = 1 
Query:    1 GSHQTDRSEVHWRQGPPQAARHEGSTQVCSCYG-VKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNNLCAIHAKRITIMPKDIQLARRNRGERS 405
            G +QTDR +++ R+   +AA H+G  +     G VKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTN LCAIHAKR+TIMPKDIQLARR RGER+
Sbjct:   39 GQNQTDRPQIYRRKSSEEAAGHQGRPKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTN-LCAIHAKRVTIMPKDIQLARRIRGERA 173
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BLAST of mRNA_A-nodosum_M_contig1097.17.1 vs. uniprot
Match: A0A251UVE6_HELAN (Putative histone superfamily protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UVE6_HELAN)

HSP 1 Score: 192 bits (488), Expect = 8.050e-61
Identity = 105/138 (76.09%), Postives = 115/138 (83.33%), Query Frame = 1 
Query:    1 GSHQTDRSEVHWRQGPPQAARHEGSTQVCSCY---GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNNLCAIHAKRITIMPKDIQLARRNRGERS 405
            GS+Q +  +V WR+G  +   H+G     S     GVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ  AVLALQEAAEAYLVGLFEDTN LCAIHAKR+TIMPKDIQLARR RGER+
Sbjct:    3 GSYQANCPQVDWREGSKETTGHQGDAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LCAIHAKRVTIMPKDIQLARRIRGERA 139
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BLAST of mRNA_A-nodosum_M_contig1097.17.1 vs. uniprot
Match: A0A3B6EHV5_WHEAT (Histone domain-containing protein n=2 Tax=Triticum TaxID=4564 RepID=A0A3B6EHV5_WHEAT)

HSP 1 Score: 194 bits (492), Expect = 9.020e-61
Identity = 106/136 (77.94%), Postives = 117/136 (86.03%), Query Frame = 1 
Query:    1 GSHQTDRSEVHWRQGPPQAARHEGSTQVCSCYG-VKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNNLCAIHAKRITIMPKDIQLARRNRGERS 405
            G H+ DR++V  RQGP +AA  +G  QV +  G VKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIA DFK+DLRFQ SAV ALQEAAEAYLVGLFEDTN LCAIH KR+TIMPKDIQLARR RGER+
Sbjct:   52 GPHEADRAQVDRRQGPAEAAGDQGGAQVGAGDGSVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAHDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTN-LCAIHVKRVTIMPKDIQLARRIRGERA 186
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BLAST of mRNA_A-nodosum_M_contig1097.17.1 vs. uniprot
Match: A0A3R7QIZ4_PENVA (Histone domain-containing protein n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7QIZ4_PENVA)

HSP 1 Score: 191 bits (485), Expect = 6.680e-60
Identity = 106/136 (77.94%), Postives = 115/136 (84.56%), Query Frame = 1 
Query:    1 GSHQTDRSEVHWRQGP-PQAARHEGSTQVCSCYGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNNLCAIHAKRITIMPKDIQLARRNRGERS 405
            GS+Q D  +V+ RQGP  Q A         +  GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTN LCAIHAKR+TIMPKDIQLARR RGER+
Sbjct:   38 GSYQADCPQVYRRQGPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTN-LCAIHAKRVTIMPKDIQLARRIRGERA 172
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BLAST of mRNA_A-nodosum_M_contig1097.17.1 vs. uniprot
Match: A0A6N2M9G9_SALVM (Histone domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2M9G9_SALVM)

HSP 1 Score: 190 bits (483), Expect = 1.110e-59
Identity = 103/136 (75.74%), Postives = 116/136 (85.29%), Query Frame = 1 
Query:    1 GSHQTDRSEVHWRQGPPQAARHEGSTQVCSCYG-VKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNNLCAIHAKRITIMPKDIQLARRNRGERS 405
            GSH+ D  +V  R+ P +A  ++G+ +     G VKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV ALQEAAEAYLVGLFEDTN LCAIHAKR+TIMPKDIQLARR RGER+
Sbjct:   32 GSHKADSKKVDRRESPEEATGYQGARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTN-LCAIHAKRVTIMPKDIQLARRIRGERA 166
[Close]
BLAST of mRNA_A-nodosum_M_contig1097.17.1 vs. uniprot
Match: A0A453MV05_AEGTS (Histone domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453MV05_AEGTS)

HSP 1 Score: 190 bits (483), Expect = 1.150e-59
Identity = 104/136 (76.47%), Postives = 115/136 (84.56%), Query Frame = 1 
Query:    1 GSHQTDRSEVHWRQGPPQAARHEGSTQVC-SCYGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNNLCAIHAKRITIMPKDIQLARRNRGERS 405
            G+++ DR +VH RQGP         T+   +  GVKKPHRYRPGTVALREIR+YQKST+LLIRKLPFQRLVREIAQDFK+DLRFQ  AVLALQEAAEAYLVGLFEDTN LCAIHAKR+TIMPKDIQLARR RGER+
Sbjct:   33 GAYEADRPQVHRRQGPXXXXXXXXXTKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LCAIHAKRVTIMPKDIQLARRIRGERA 167
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1097.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A453MV18_AEGTS1.370e-6580.88Histone domain-containing protein n=1 Tax=Aegilops... [more]
A0A453MV92_AEGTS4.040e-6374.32Histone domain-containing protein n=1 Tax=Aegilops... [more]
K0S5H6_THAOC4.220e-6280.15Histone domain-containing protein n=1 Tax=Thalassi... [more]
A0A4V5ZY76_STECR1.420e-6178.83Histone domain-containing protein n=1 Tax=Steinern... [more]
A0A437DNH4_ORYJA2.080e-6177.21Histone domain-containing protein n=1 Tax=Oryzias ... [more]
A0A251UVE6_HELAN8.050e-6176.09Putative histone superfamily protein n=1 Tax=Helia... [more]
A0A3B6EHV5_WHEAT9.020e-6177.94Histone domain-containing protein n=2 Tax=Triticum... [more]
A0A3R7QIZ4_PENVA6.680e-6077.94Histone domain-containing protein n=1 Tax=Penaeus ... [more]
A0A6N2M9G9_SALVM1.110e-5975.74Histone domain-containing protein n=1 Tax=Salix vi... [more]
A0A453MV05_AEGTS1.150e-5976.47Histone domain-containing protein n=1 Tax=Aegilops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1097contigA-nodosum_M_contig1097:216877..217284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4565.Traes_6DS_6DB656A6F.2
Preferred nameHHT1
PFAMsHistone
Model size410
Max annot lvl2759|Eukaryota
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000228,GO:0000278,GO:0000775,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0000792,GO:0001672,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005720,GO:0005721,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006351,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009653,GO:0009987,GO:0010467,GO:0010564,GO:0010639,GO:0010847,GO:0010948,GO:0010965,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019438,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030435,GO:0031298,GO:0031445,GO:0031454,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031577,GO:0031618,GO:0031934,GO:0031974,GO:0031981,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033554,GO:0034293,GO:0034506,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034728,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043505,GO:0043596,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044815,GO:0044877,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0061638,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0097159,GO:0097659,GO:0098687,GO:0098781,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902275,GO:1903046,GO:1903047,GO:1905818,GO:1905819,GO:1990421,GO:1990707,GO:2000816,GO:2001251
Exons1
Evalue6.62e-64
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size408
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866482.099884-CDS-A-nodosum_M_contig1097:216876..2172841680866482.099884-CDS-A-nodosum_M_contig1097:216876..217284Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1097 216877..217284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1097.17.1prot_A-nodosum_M_contig1097.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1097 216877..217284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1097.17.1

>prot_A-nodosum_M_contig1097.17.1 ID=prot_A-nodosum_M_contig1097.17.1|Name=mRNA_A-nodosum_M_contig1097.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=136bp
GSHQTDRSEVHWRQGPPQAARHEGSTQVCSCYGVKKPHRYRPGTVALREI
RRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLV
GLFEDTNNLCAIHAKRITIMPKDIQLARRNRGERS*
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mRNA from alignment at A-nodosum_M_contig1097:216877..217284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1097.17.1 ID=mRNA_A-nodosum_M_contig1097.17.1|Name=mRNA_A-nodosum_M_contig1097.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:216877..217284+ (Ascophyllum nodosum dioecious)
GGCTCGCACCAAACAGACCGCTCGGAAGTCCACTGGAGGCAAGGCCCCCC
GCAAGCAGCTCGCCACGAAGGCAGCACGCAAGTCTGCTCCTGCTATGGTG
TGAAAAAGCCCCACCGTTACAGGCCCGGTACGGTTGCCCTACGCGAGATT
CGCCGGTACCAAAAGTCCACGGAGCTTCTTATCCGCAAGCTGCCGTTCCA
GCGTCTAGTGCGTGAGATCGCGCAAGACTTCAAAAGCGACTTGCGTTTCC
AAGGCTCCGCTGTGCTAGCCCTGCAAGAGGCGGCTGAGGCGTACCTGGTG
GGTCTGTTTGAAGACACCAACAATCTGTGCGCCATCCACGCCAAGCGTAT
AACCATCATGCCCAAGGATATTCAGCTGGCTCGGCGCAATCGAGGCGAGC
GGTCTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1097:216877..217284+

>mRNA_A-nodosum_M_contig1097.17.1 ID=mRNA_A-nodosum_M_contig1097.17.1|Name=mRNA_A-nodosum_M_contig1097.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at A-nodosum_M_contig1097:216877..217284+ (Ascophyllum nodosum dioecious)
GGCTCGCACCAAACAGACCGCTCGGAAGTCCACTGGAGGCAAGGCCCCCC
GCAAGCAGCTCGCCACGAAGGCAGCACGCAAGTCTGCTCCTGCTATGGTG
TGAAAAAGCCCCACCGTTACAGGCCCGGTACGGTTGCCCTACGCGAGATT
CGCCGGTACCAAAAGTCCACGGAGCTTCTTATCCGCAAGCTGCCGTTCCA
GCGTCTAGTGCGTGAGATCGCGCAAGACTTCAAAAGCGACTTGCGTTTCC
AAGGCTCCGCTGTGCTAGCCCTGCAAGAGGCGGCTGAGGCGTACCTGGTG
GGTCTGTTTGAAGACACCAACAATCTGTGCGCCATCCACGCCAAGCGTAT
AACCATCATGCCCAAGGATATTCAGCTGGCTCGGCGCAATCGAGGCGAGC
GGTCTTGA
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