mRNA_A-nodosum_M_contig10966.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10966.1.1
Unique NamemRNA_A-nodosum_M_contig10966.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A2N9HEX1_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HEX1_FAGSY)

HSP 1 Score: 75.1 bits (183), Expect = 8.710e-14
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 QLDVEMAFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 273
            Q+DV+ AFL  D++EE+Y++ P GY DS NQV RL++A+YGL  A L W  KF   +  +G      D  +F R H    + ++++YVDD+
Sbjct:  962 QMDVKNAFLNGDLLEEVYMQPPPGYPDSQNQVCRLRRALYGLKQAPLAWFAKFSSVVAQQGFTPSSYDSALFIR-HTSTGITLVLLYVDDM 1051
[Close]
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A2N9HCU5_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HCU5_FAGSY)

HSP 1 Score: 73.6 bits (179), Expect = 2.950e-13
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 QLDVEMAFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 273
            Q+DV+ AFL  D++EE+Y++ P GY DS NQV RL++A+YGL  A   W  KF   +  +G      D  +F R H    + +I++YVDD+
Sbjct:  640 QMDVKNAFLNGDLLEEVYMQPPPGYPDSQNQVCRLRRALYGLKQAPRAWFAKFSSVVAQQGFTPSSYDSALFIR-HTSTSIALILLYVDDM 729
[Close]
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A535FQJ1_9CHLR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535FQJ1_9CHLR)

HSP 1 Score: 72.4 bits (176), Expect = 3.620e-13
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 QLDVEMAFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 273
            QLD   AF  +++ EE+YVELPDGY+ +  +VGRL +A+YGL  + LLW K   G L   G +  K +PC+F   HL     I+  +VDD+
Sbjct:   80 QLDAVNAFPNSELDEEVYVELPDGYKLT-GKVGRLLRALYGLRRSPLLWQKLLSGALTELGLQAGKEEPCLFLTDHL-----IVFFFVDDI 164
[Close]
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A2N9J019_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J019_FAGSY)

HSP 1 Score: 73.2 bits (178), Expect = 3.790e-13
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 QLDVEMAFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 273
            Q+DV+ AFL  D++EE+Y++ P GY DS NQV RL++A+YGL  A   W  KF   +  +G      D  +F R H    +++I++YVDD+
Sbjct:   62 QMDVKNAFLNGDLLEEVYMQPPLGYPDSQNQVCRLRRALYGLKQAPRAWFAKFSSVVAQQGFTPSSYDSALFIR-HTSTGIILILLYVDDM 151
[Close]
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A2N9HMY8_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HMY8_FAGSY)

HSP 1 Score: 73.2 bits (178), Expect = 3.930e-13
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 QLDVEMAFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 273
            Q+DV+ AFL  D++EE+Y++ P GY DS NQV RL++A+YGL  A   W  KF   +  +G      D  +F R H    + +I++YVDD+
Sbjct:  238 QMDVKNAFLNGDLLEEVYMQPPPGYPDSQNQVCRLRRALYGLKQAPRAWFAKFSSVVAQQGFTPSSYDSALFIR-HTSTGITLILLYVDDM 327
[Close]
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A2N9I2A6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I2A6_FAGSY)

HSP 1 Score: 73.2 bits (178), Expect = 4.020e-13
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 QLDVEMAFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 273
            Q+DV+ AFL  D++EE+Y++ P GY DS NQV RL++A+YGL  A   W  KF   +  +G      D  +F R H    + +I++YVDD+
Sbjct:  538 QMDVKNAFLNGDLLEEVYMQPPPGYPDSQNQVCRLRRALYGLKQAPRAWFAKFSSVVAQQGFTPSSYDSALFIR-HTSTGITLILLYVDDM 627
[Close]
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A2N9IJ59_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IJ59_FAGSY)

HSP 1 Score: 73.2 bits (178), Expect = 4.030e-13
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 QLDVEMAFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 273
            Q+DV+ AFL  D++EE+Y++ P GY DS NQV RL++A+YGL  A   W  KF   +  +G      D  +F R H    + +I++YVDD+
Sbjct:  597 QMDVKNAFLNGDLLEEVYMQPPPGYPDSQNQVCRLRRALYGLKQAPRAWFAKFSSVVAQQGFTPSSYDSALFIR-HTSTGITLILLYVDDM 686
[Close]
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A2N9GQ28_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GQ28_FAGSY)

HSP 1 Score: 73.2 bits (178), Expect = 4.030e-13
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 QLDVEMAFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 273
            Q+DV+ AFL  D++EE+Y++ P GY DS NQV RL++A+YGL  A   W  KF   +  +G      D  +F R H    + +I++YVDD+
Sbjct:  710 QMDVKNAFLNGDLLEEVYMQPPPGYPDSQNQVCRLRRALYGLKQAPRAWFAKFSSVVAQQGFTPSSYDSALFIR-HTSTGITLILLYVDDM 799
[Close]
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A8J5YQJ2_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YQJ2_9ROSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.030e-13
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 QLDVEMAFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 273
            Q+DV  AFL+ D+ EE+Y+ELP G+      V RLQK++YGL  A   W+ K    L+S G +  K D  +F ++  GKVV++++ YVDDL
Sbjct:  601 QMDVFNAFLQGDLCEEVYMELPAGFCSQEGTVCRLQKSLYGLKQASRQWNLKLTQALVSAGFQQSKFDYSLFTKRQGGKVVLLLI-YVDDL 690
[Close]
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A2N9IGZ9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IGZ9_FAGSY)

HSP 1 Score: 73.2 bits (178), Expect = 4.040e-13
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 QLDVEMAFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 273
            Q+DV+ AFL  D++EE+Y++ P GY DS NQV RL++A+YGL  A   W  KF   +  +G      D  +F R H    + +I++YVDD+
Sbjct:  723 QMDVKNAFLNGDLLEEVYMQPPPGYPDSQNQVCRLRRALYGLKQAPRAWFAKFSSVVAQQGFTPSSYDSALFIR-HTSTGITLILLYVDDM 812
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9HEX1_FAGSY8.710e-1441.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9HCU5_FAGSY2.950e-1341.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A535FQJ1_9CHLR3.620e-1343.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9J019_FAGSY3.790e-1341.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HMY8_FAGSY3.930e-1341.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9I2A6_FAGSY4.020e-1341.76Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9IJ59_FAGSY4.030e-1341.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GQ28_FAGSY4.030e-1341.76Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A8J5YQJ2_9ROSI4.030e-1343.96Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9IGZ9_FAGSY4.040e-1341.76Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10966contigA-nodosum_M_contig10966:968..1240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7029.ACYPI089092-PA
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size273
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.14e-13
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda
DescriptionEncoded by
Cds size258
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866481.7003834-CDS-A-nodosum_M_contig10966:967..12251680866481.7003834-CDS-A-nodosum_M_contig10966:967..1225Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10966 968..1225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866481.713522-UTR-A-nodosum_M_contig10966:1225..12401680866481.713522-UTR-A-nodosum_M_contig10966:1225..1240Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10966 1226..1240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10966.1.1prot_A-nodosum_M_contig10966.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10966 968..1225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10966.1.1

>prot_A-nodosum_M_contig10966.1.1 ID=prot_A-nodosum_M_contig10966.1.1|Name=mRNA_A-nodosum_M_contig10966.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
MAFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGG
ELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL
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mRNA from alignment at A-nodosum_M_contig10966:968..1240-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10966.1.1 ID=mRNA_A-nodosum_M_contig10966.1.1|Name=mRNA_A-nodosum_M_contig10966.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at A-nodosum_M_contig10966:968..1240- (Ascophyllum nodosum dioecious)
CAGCTTGACGTAGAAATGGCGTTTCTCGAGGCGGATGTTATGGAGGAGCT
CTACGTTGAGCTCCCCGACGGGTATCGCGACTCGCCGAACCAGGTTGGAC
GACTGCAGAAGGCCATGTACGGCCTGATGCACGCCGGACTACTGTGGTCG
AAGAAGTTCGGCGGAGAGCTGATATCGAAGGGTTCGAGAGGTCCCAAGCC
CGATCCCTGCGTGTTCCGGCGGAAGCATCTGGGGAAGGTCGTCGTCATCA
TCGTGGTCTACGTCGACGATCTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10966:968..1240-

>mRNA_A-nodosum_M_contig10966.1.1 ID=mRNA_A-nodosum_M_contig10966.1.1|Name=mRNA_A-nodosum_M_contig10966.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig10966:968..1240- (Ascophyllum nodosum dioecious)
ATGGCGTTTCTCGAGGCGGATGTTATGGAGGAGCTCTACGTTGAGCTCCC
CGACGGGTATCGCGACTCGCCGAACCAGGTTGGACGACTGCAGAAGGCCA
TGTACGGCCTGATGCACGCCGGACTACTGTGGTCGAAGAAGTTCGGCGGA
GAGCTGATATCGAAGGGTTCGAGAGGTCCCAAGCCCGATCCCTGCGTGTT
CCGGCGGAAGCATCTGGGGAAGGTCGTCGTCATCATCGTGGTCTACGTCG
ACGATCTA
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