mRNA_A-nodosum_M_contig1096.32.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1096.32.1
Unique NamemRNA_A-nodosum_M_contig1096.32.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1096.32.1 vs. uniprot
Match: D7FP39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP39_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 7.500e-30
Identity = 80/172 (46.51%), Postives = 95/172 (55.23%), Query Frame = 1 
Query:   73 CEHAHHLAWFLLTSACLSQGAQG-VVRHAPKTGVPL---GVHCKNVELGVLFHSTPRRAYYVEPVPGCXXXXXXXXXDPDLEARPSVATASTKRSGKEERDGPRQRSTSLLY---VPLPVPFRLDSEPYSNPDAGSPDLRFLPYMHILK-EFPRPAGVESLLKSNVTEAQFA 564
            C +  H +WFLLTSACLS+GAQG VV H  +TG      G   KNVELGVLFHS+P RAYY  P+P C          P     P      T+         P     S++    +PLPVPF L SE Y++P   SP++RF PYMH LK E P    V+ LL SNV EAQFA
Sbjct:  786 CTNVQHFSWFLLTSACLSKGAQGEVVAHGDRTGTGTAAPGAIFKNVELGVLFHSSPERAYYTAPLPDCACPSCGC--SPGSGGPPHCTRTDTRELP------PXXXXXSMVSPRSIPLPVPFCLHSEAYTDPLTESPNVRFAPYMHTLKSERPWSVEVQRLLNSNVREAQFA 949
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BLAST of mRNA_A-nodosum_M_contig1096.32.1 vs. uniprot
Match: A0A6H5KRI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI8_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.300e-28
Identity = 77/175 (44.00%), Postives = 94/175 (53.71%), Query Frame = 1 
Query:   73 CEHAHHLAWFLLTSACLSQ------GAQG-VVRHAPKTGVPL---GVHCKNVELGVLFHSTPRRAYYVEPVPGCXXXXXXXXXDPDLEARPSVATASTKRSGKEERDGPRQRSTSLLYVPLPVPFRLDSEPYSNPDAGSPDLRFLPYMHILK-EFPRPAGVESLLKSNVTEAQFA 564
            C +  H +WFLLTSACLS+      GAQG VV H  +TG      G   KNVELGVLFHS+P RAY+  P+P C            +     + T + +               S   +PLPVPF LDSE Y++P   SP+ RF PYMH LK + P    V+SLL SNV EAQFA
Sbjct:  521 CANVQHFSWFLLTSACLSKAPSRAAGAQGEVVAHGDRTGTGTAASGAIFKNVELGVLFHSSPERAYHTAPLPDCACPACGCSPGSGVPPH-RIRTDTLELPPXXXXXXXXXXMVSPRSIPLPVPFSLDSEAYTDPLTESPNCRFAPYMHTLKSDRPWSVEVQSLLNSNVREAQFA 694
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1096.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP39_ECTSI7.500e-3046.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRI8_9PHAE6.300e-2844.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1096contigA-nodosum_M_contig1096:213203..214951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FP39
PFAMsTyr-DNA_phospho
Model size788
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.24e-31
EggNOG OGs2E1MX@1|root,2S8Y8@2759|Eukaryota
Ec32 ortholog descriptionTyrosyl-DNA phosphodiesterase C-terminal domain
Ec32 orthologEc-10_002370.1
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866481.6285894-CDS-A-nodosum_M_contig1096:213202..2133311680866481.6285894-CDS-A-nodosum_M_contig1096:213202..213331Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1096 213203..213331 +
1680866481.6417503-CDS-A-nodosum_M_contig1096:213684..2140641680866481.6417503-CDS-A-nodosum_M_contig1096:213684..214064Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1096 213685..214064 +
1680866481.6531107-CDS-A-nodosum_M_contig1096:214673..2147311680866481.6531107-CDS-A-nodosum_M_contig1096:214673..214731Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1096 214674..214731 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866481.6657305-UTR-A-nodosum_M_contig1096:214731..2149511680866481.6657305-UTR-A-nodosum_M_contig1096:214731..214951Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1096 214732..214951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1096.32.1prot_A-nodosum_M_contig1096.32.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1096 213203..214731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1096.32.1

>prot_A-nodosum_M_contig1096.32.1 ID=prot_A-nodosum_M_contig1096.32.1|Name=mRNA_A-nodosum_M_contig1096.32.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=189bp
GAGAGAQGQWGDAPYLLVGGGRGPCEHAHHLAWFLLTSACLSQGAQGVVR
HAPKTGVPLGVHCKNVELGVLFHSTPRRAYYVEPVPGCGCGSGCRCSDPD
LEARPSVATASTKRSGKEERDGPRQRSTSLLYVPLPVPFRLDSEPYSNPD
AGSPDLRFLPYMHILKEFPRPAGVESLLKSNVTEAQFA*
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mRNA from alignment at A-nodosum_M_contig1096:213203..214951+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1096.32.1 ID=mRNA_A-nodosum_M_contig1096.32.1|Name=mRNA_A-nodosum_M_contig1096.32.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1749bp|location=Sequence derived from alignment at A-nodosum_M_contig1096:213203..214951+ (Ascophyllum nodosum dioecious)
GGAGCCGGAGCTGGAGCGCAAGGTCAATGGGGCGACGCCCCGTATCTTCT
TGTCGGGGGGGGGCGAGGCCCGTGCGAGCACGCCCACCACCTGGCGTGGT
TTCTTCTGACCAGCGCCTGCCTCTCGCAAGTGCGTTTTGATGGACTTGTT
GACTTATTGTAAACCTTTTTTTGAGGCGAGCGCGTAGTGCAATATAATGT
AAGGAGCGTTTTTCGAACGGCAGAAACCCGCGCGCAAGCGCCCCGAACCC
CTCACGCGAAAGACCGTTGAATTTCGAAGAGATGTTGCTCTTGTCCACCA
CCGTTGTTGTTGAACATGTGCGCCATGCGCGCCAATCTGTCACACCCGTC
CGCACGCCTGAGTCTACTTGTGACGGCATACATTCATCGTCCGTCTGCGC
GTCCGGGACGGGGTGCTTGTCTTGCGCGCGCCACATCCCGGGGGTGGGGT
GGGGTGGGACGCTGCGCGGCGCGTGGCTGCAGGGAGCTCAAGGCGTGGTG
AGACACGCCCCCAAAACTGGGGTCCCCCTAGGAGTTCACTGCAAAAACGT
CGAGCTGGGTGTCCTGTTCCACTCGACACCGCGAAGAGCCTACTACGTGG
AGCCCGTGCCCGGGTGCGGTTGCGGAAGCGGTTGCCGGTGCTCTGACCCC
GATTTGGAGGCCCGCCCGTCCGTGGCCACGGCGTCGACTAAGCGGTCGGG
GAAGGAGGAGCGCGACGGCCCTCGACAGCGAAGCACGTCGCTGCTGTACG
TCCCGCTGCCGGTCCCGTTCCGTTTGGACAGCGAGCCCTACTCGAACCCG
GACGCGGGATCGCCGGACCTGCGCTTCCTCCCGTACATGCACATTCTGAA
GGAATTCCCCAGGTGGCCCGTGGGAAAGAGGGGAGAGCGAGACGATGTCG
GGCCCATTTGGGGTCGGTATGGTGGGGGGGTGGGTTGGACACTTGGGACA
GTTCTGTGCAAGTTTTCTCTTGTAGCCCCCCGCTCACGGATACCCGCGTA
CAGGCAGCGATTATTTTATAGGAATATCAAATATTGCTACGTTTTTTTTG
TCACTAGCGAACGTGCCTAGATGGATATATATAGAGAGAGATAGCTATAT
ATATGCAATATTATATGAGTGTGGCTTGTATTTTTTTGCCTCCCAACAGT
AAAATTGTCATTTGAGTACTTAGAAAGCCAGAAGTGTTTCCTCTATGTTT
GATGAACTGTCGCAGACGGTGTAGTGCGTGGCTTTTAAATATATCCCTAC
GTATTAGCGGTACGGTATATGCTCATACGGTCTTCAAGGCACCATAGGGT
GTAACCATACCATAGGGTGCAATCACACCATAGGGTGTAATCGTACCATA
GGGTGTAATCATACCATAATTTGAAACAAACCATAACCCCTTCCGTCGTC
TCGTAAACGGTAGAAAGCAACCCAACCGCGTGTGCCGACGCTTTCGCCAT
CCGCCAATCTGCCAAAATTAGGCCCGCCGGGGTGGAGAGCCTGCTCAAGT
CCAACGTTACGGAGGCGCAGTTCGCCTAGTCTACGTATTAATAGCATGAA
GTTGTACGTAGGCACGGGCAGCTTTGCGCTCGGTGGCAAGCAAGACCTCT
GAATGCTCGAAGGCGAGCATGGAGCTACAGCTGAGGCCCAAGCTACGCGT
CATTTCATTCATATCTGGGGAGCAAGGGACAAGTAGGTAATCTGTTTCCC
TCGAGCGAGATTCGAGATGATTCGGTATGAGCGCATATGTACTGATGCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1096:213203..214951+

>mRNA_A-nodosum_M_contig1096.32.1 ID=mRNA_A-nodosum_M_contig1096.32.1|Name=mRNA_A-nodosum_M_contig1096.32.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=567bp|location=Sequence derived from alignment at A-nodosum_M_contig1096:213203..214951+ (Ascophyllum nodosum dioecious)
GGAGCCGGAGCTGGAGCGCAAGGTCAATGGGGCGACGCCCCGTATCTTCT
TGTCGGGGGGGGGCGAGGCCCGTGCGAGCACGCCCACCACCTGGCGTGGT
TTCTTCTGACCAGCGCCTGCCTCTCGCAAGGAGCTCAAGGCGTGGTGAGA
CACGCCCCCAAAACTGGGGTCCCCCTAGGAGTTCACTGCAAAAACGTCGA
GCTGGGTGTCCTGTTCCACTCGACACCGCGAAGAGCCTACTACGTGGAGC
CCGTGCCCGGGTGCGGTTGCGGAAGCGGTTGCCGGTGCTCTGACCCCGAT
TTGGAGGCCCGCCCGTCCGTGGCCACGGCGTCGACTAAGCGGTCGGGGAA
GGAGGAGCGCGACGGCCCTCGACAGCGAAGCACGTCGCTGCTGTACGTCC
CGCTGCCGGTCCCGTTCCGTTTGGACAGCGAGCCCTACTCGAACCCGGAC
GCGGGATCGCCGGACCTGCGCTTCCTCCCGTACATGCACATTCTGAAGGA
ATTCCCCAGGCCCGCCGGGGTGGAGAGCCTGCTCAAGTCCAACGTTACGG
AGGCGCAGTTCGCCTAG
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