mRNA_A-nodosum_M_contig1096.27.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1096.27.1
Unique NamemRNA_A-nodosum_M_contig1096.27.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1096.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1096contigA-nodosum_M_contig1096:190941..192057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size789
Hectar predicted targeting categoryother localisation
Exons2
Cds size537
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866479.8613281-UTR-A-nodosum_M_contig1096:190940..1910481680866479.8613281-UTR-A-nodosum_M_contig1096:190940..191048Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1096 190941..191048 -
1680866479.8814104-UTR-A-nodosum_M_contig1096:191913..1920571680866479.8814104-UTR-A-nodosum_M_contig1096:191913..192057Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1096 191914..192057 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866479.873249-CDS-A-nodosum_M_contig1096:191048..1915851680866479.873249-CDS-A-nodosum_M_contig1096:191048..191585Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1096 191049..191585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1096.27.1prot_A-nodosum_M_contig1096.27.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1096 191049..191585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1096.27.1

>prot_A-nodosum_M_contig1096.27.1 ID=prot_A-nodosum_M_contig1096.27.1|Name=mRNA_A-nodosum_M_contig1096.27.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=179bp
MKTNLNGLIRERSNATPTGWNKTVNKECGGVGGRCVGGTSGGGDVSSGGG
WGGRRVGSPQRQSRTITGQLGAGGDQQNQQRHIRREVGDAGREERATATR
KQQVAPWMSRAPRAWQMGVSPVSAWSAAAGGGGRGGGRGGGGGGHNISAP
RQANSTELTVGLNSGGRQPRSRTASRRL*
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mRNA from alignment at A-nodosum_M_contig1096:190941..192057-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1096.27.1 ID=mRNA_A-nodosum_M_contig1096.27.1|Name=mRNA_A-nodosum_M_contig1096.27.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1117bp|location=Sequence derived from alignment at A-nodosum_M_contig1096:190941..192057- (Ascophyllum nodosum dioecious)
GTATCTTTCGCGTCTAATCCGCCCGTGGTTACGTATCGGGAGGGCGTGAA
CACCGGCGTCTACGATGGCGCTAGTGCATGTGCTGGCGGTCTTGGATGGT
CAAGGCCTTCTTCGTCTTCGTCGCTATTTTTGACATCACAGCAGGTTTGA
TCTCGTAACCGCGCACGCCTACGAATCGGTCGCACTTGGCCCGATCTCGA
ATGCCCCGTAACAATGAATCATTTCTTACTTCACCTGAGGGTTCCACTTT
TTTTTTTGCTTTTTTTTTTTTTTAAGATGAGTGCGTGATATCAAAACGTG
AAATAATGCGATAAGATGGTTCAAAATTATCGTCGTTGGTCAATCGGAGA
TTATGGGCGACATCTCTCTTGTGATTGCACGGTGCACCGTCGCGCTCGCT
TCTCACTCTCCACTCTCCTTCCACGCATGGGTCGCAAAACTGTCCGCCTC
GCGCGAATCCACAACACGGCAGATGAAGACGAATCTGAATGGCCTGATCA
GAGAGAGGAGCAACGCGACCCCAACCGGATGGAACAAAACCGTGAACAAG
GAATGCGGTGGTGTTGGGGGCAGATGTGTCGGTGGTACGTCGGGAGGAGG
AGATGTTTCTAGTGGCGGCGGTTGGGGTGGCCGACGTGTTGGTAGCCCGC
AAAGGCAGTCCCGTACTATTACCGGTCAGCTTGGGGCAGGAGGAGACCAA
CAAAACCAACAGCGCCACATACGTCGCGAAGTGGGAGACGCTGGGAGAGA
GGAGCGCGCCACCGCGACCCGCAAGCAGCAAGTCGCGCCTTGGATGTCAA
GGGCGCCTAGGGCGTGGCAGATGGGCGTTTCTCCTGTATCCGCATGGAGC
GCTGCCGCTGGGGGCGGTGGTCGTGGTGGTGGCCGTGGCGGCGGTGGCGG
CGGGCACAACATATCTGCGCCGCGGCAGGCTAACAGCACGGAGTTAACAG
TCGGTCTTAATAGTGGTGGAAGGCAACCTCGCTCCCGAACAGCCTCCCGT
CGACTTTGAACCGACGGTCATTTTTGTTGAAAAGAAGGGAAGCTCGCCAC
TCCACAACTTCTTTTTACGGCGTTCCCGATGAGAGACGGAGCGCGAGAAG
ACCCGCGTGCCGGAAGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1096:190941..192057-

>mRNA_A-nodosum_M_contig1096.27.1 ID=mRNA_A-nodosum_M_contig1096.27.1|Name=mRNA_A-nodosum_M_contig1096.27.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=537bp|location=Sequence derived from alignment at A-nodosum_M_contig1096:190941..192057- (Ascophyllum nodosum dioecious)
ATGAAGACGAATCTGAATGGCCTGATCAGAGAGAGGAGCAACGCGACCCC
AACCGGATGGAACAAAACCGTGAACAAGGAATGCGGTGGTGTTGGGGGCA
GATGTGTCGGTGGTACGTCGGGAGGAGGAGATGTTTCTAGTGGCGGCGGT
TGGGGTGGCCGACGTGTTGGTAGCCCGCAAAGGCAGTCCCGTACTATTAC
CGGTCAGCTTGGGGCAGGAGGAGACCAACAAAACCAACAGCGCCACATAC
GTCGCGAAGTGGGAGACGCTGGGAGAGAGGAGCGCGCCACCGCGACCCGC
AAGCAGCAAGTCGCGCCTTGGATGTCAAGGGCGCCTAGGGCGTGGCAGAT
GGGCGTTTCTCCTGTATCCGCATGGAGCGCTGCCGCTGGGGGCGGTGGTC
GTGGTGGTGGCCGTGGCGGCGGTGGCGGCGGGCACAACATATCTGCGCCG
CGGCAGGCTAACAGCACGGAGTTAACAGTCGGTCTTAATAGTGGTGGAAG
GCAACCTCGCTCCCGAACAGCCTCCCGTCGACTTTGA
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