mRNA_A-nodosum_M_contig1095.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1095.17.1
Unique NamemRNA_A-nodosum_M_contig1095.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1095.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1095contigA-nodosum_M_contig1095:234090..234681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNY4
PFAMsCHAT,Dict-STAT-coil,SH2,STAT_bind
Model size272
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0023052,GO:0030154,GO:0030587,GO:0031149,GO:0031150,GO:0031154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0035556,GO:0042802,GO:0042803,GO:0043157,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046983,GO:0047484,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051703,GO:0051704,GO:0051716,GO:0060255,GO:0065007,GO:0080090,GO:0080134,GO:0090702,GO:0097159,GO:0097696,GO:0099120,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue0.000128
EggNOG OGsKOG3667@1|root,KOG3667@2759|Eukaryota
DescriptionSTAT cascade
Cds size261
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866479.5656688-CDS-A-nodosum_M_contig1095:234089..2341701680866479.5656688-CDS-A-nodosum_M_contig1095:234089..234170Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1095 234090..234170 -
1680866479.5747645-CDS-A-nodosum_M_contig1095:234491..2346711680866479.5747645-CDS-A-nodosum_M_contig1095:234491..234671Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1095 234492..234671 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866479.5825744-UTR-A-nodosum_M_contig1095:234671..2346811680866479.5825744-UTR-A-nodosum_M_contig1095:234671..234681Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1095 234672..234681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1095.17.1prot_A-nodosum_M_contig1095.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1095 234090..234671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1095.17.1

>prot_A-nodosum_M_contig1095.17.1 ID=prot_A-nodosum_M_contig1095.17.1|Name=mRNA_A-nodosum_M_contig1095.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=87bp
MGKRERALQVCNFVLKRGGLGFDAIFYADCLQSDECSPSSKEESCLHTEG
VDNRSNVRHGIGLALGMPGESVPSAQELSDFLVTSTQ
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mRNA from alignment at A-nodosum_M_contig1095:234090..234681-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1095.17.1 ID=mRNA_A-nodosum_M_contig1095.17.1|Name=mRNA_A-nodosum_M_contig1095.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=592bp|location=Sequence derived from alignment at A-nodosum_M_contig1095:234090..234681- (Ascophyllum nodosum dioecious)
CGAAAGAGGGATGGGTAAGCGGGAACGGGCTCTACAAGTCTGCAACTTCG
TGCTCAAAAGAGGGGGTCTAGGGTTTGATGCGATATTCTATGCGGACTGC
TTGCAGTCCGATGAATGTTCTCCATCGTCGAAAGAAGAGTCTTGTCTCCA
CACGGAGGGCGTTGACAACAGGAGCAATGTCCGTCATGGGGTGAGCGCAG
ATCCGGATTGAGTCCGTATTTCAATTCCGTGAACTTCGGGGGCATGTGTG
GGCAGCATAGCCGTCATTATACCAGTGCTCCGGCTCGCTTGCTAAGACCA
TGGCGACACTCGTCGAGCTTGGTATTCGTGTCTTGAAATGCGTAGGGCTA
TGCTTGTAAACAGACTCGTTGGAGCTTTCGGATTACCTTACGTGGTGGTT
CGGTTCCAATCAGGCTCGTTTTAGATGGCGATTTCAGGCGCGCACTTGTT
TTCGCATCCACCATGACATGTTCCCCCTTTGCGTGGTCCGGGTCGCGGTA
TCCGCGCCCAGATCGGGTTGGCGCTTGGCATGCCTGGGGAGTCTGTTCCC
TCTGCCCAGGAGCTGTCGGATTTTCTGGTGACGTCTACCCAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1095:234090..234681-

>mRNA_A-nodosum_M_contig1095.17.1 ID=mRNA_A-nodosum_M_contig1095.17.1|Name=mRNA_A-nodosum_M_contig1095.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=261bp|location=Sequence derived from alignment at A-nodosum_M_contig1095:234090..234681- (Ascophyllum nodosum dioecious)
ATGGGTAAGCGGGAACGGGCTCTACAAGTCTGCAACTTCGTGCTCAAAAG
AGGGGGTCTAGGGTTTGATGCGATATTCTATGCGGACTGCTTGCAGTCCG
ATGAATGTTCTCCATCGTCGAAAGAAGAGTCTTGTCTCCACACGGAGGGC
GTTGACAACAGGAGCAATGTCCGTCATGGGATCGGGTTGGCGCTTGGCAT
GCCTGGGGAGTCTGTTCCCTCTGCCCAGGAGCTGTCGGATTTTCTGGTGA
CGTCTACCCAA
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