mRNA_A-nodosum_M_contig10948.3.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10948.3.1 vs. uniprot
Match: D7G0J2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J2_ECTSI) HSP 1 Score: 150 bits (379), Expect = 8.920e-38 Identity = 89/182 (48.90%), Postives = 115/182 (63.19%), Query Frame = 1
Query: 289 LPHVALPHSYKPIKIVVGSMDCDHTTLACTELLVSARRGASNVPGGVVVFGIDAEWSVWATGVR-PVAVVQLSTIEGYTVVFHIKPNERRVGVFPKALKELLENGDVPLAGVTVGHDLTLIRNSYNVEGTGEEDLGQLATKHLGIGVGSRSLEDLCATLLGQRLSKGNVRMSNWEQALSDDQ 831
LP++ P PI + V S +C+ ++ C +LL RR ++ P V G D EWSV +G R VA+VQLS +GYTV+FH+K ERR G+ P ALKELL N + LAGV+V DLT + NSY V GT D+GQLA HL + G+RSL+ L A LL +RL+K VR SNWE L+ DQ
Sbjct: 78 LPNLEFPAGASPILVRVASENCELSSRICLQLL---RRARASAPA---VLGFDIEWSVRPSGPRRQVALVQLSARDGYTVLFHLKYEERRRGILPTALKELLVNDTIQLAGVSVRGDLTHLFNSYGVHGTKPVDIGQLAGVHLHVKNGARSLQALTAELLHRRLAKDAVRTSNWETTLTKDQ 253
BLAST of mRNA_A-nodosum_M_contig10948.3.1 vs. uniprot
Match: A0A8H8A4N4_9ASCO (3'-5' exonuclease domain-containing protein n=1 Tax=Pneumocystis sp. 'macacae' TaxID=2698480 RepID=A0A8H8A4N4_9ASCO) HSP 1 Score: 61.2 bits (147), Expect = 2.940e-7 Identity = 50/136 (36.76%), Postives = 66/136 (48.53%), Query Frame = 1
Query: 439 GIDAEWSVWATGVRPVAVVQLSTIEGYTVVFHIKPNERRVGVFPKALKELLENGDVPLAGVTVGHDLTLIRNSYNVEGTGEEDLGQLATKHLGIGVGSRSLED---------LCATLLGQRLSKGNVRMSNWEQAL 819
G D EW + G VA++QLS V+FH+ G+FP+ALK LLEN GV V +D + + + G+G +L QLA + V S E L LG+ L KGNVR SNW+Q L
Sbjct: 96 GFDMEWKPY--GDSKVAIIQLSDANSI-VLFHLSLMGLE-GIFPEALKGLLENPCYIKCGVGVRNDGYKLFKDFGIIGSGFLELSQLA-----MAVDSNKWESNTRLIGLTKLAEQYLGKPLFKGNVRFSNWDQEL 222
BLAST of mRNA_A-nodosum_M_contig10948.3.1 vs. uniprot
Match: A0A1U7LXB9_NEOID (Werner syndrome ATP-dependent helicase n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LXB9_NEOID) HSP 1 Score: 60.8 bits (146), Expect = 6.370e-7 Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 1
Query: 433 VFGIDAEWS-VWATGVRPVAVVQLSTIEGYTVVFHIKPNERRVGVFPKALKELLENGDVPLAGVTVGHDLTLIRNSYNVEGTGEEDLGQLAT-----KHLGIGVGSRSLEDLCATLLGQRLSKGNVRMSNWEQALSDDQ 831
V G D EW V+ P V L + V+ I+ ++ FP AL E++ N + GV + D + ++YNV G +L LA + + G + ++ LC LG+ LSKG VR+SNW Q LS DQ
Sbjct: 207 VLGFDMEWPPVFRKSKTPNPKVSLIQLCDPNVILLIQVG--KMTAFPPALAEIIGNPRILKCGVAISGDGKRLLDAYNVTCRGLLELSNLAVSVDPERWVSNGARTIAMTKLCEIYLGKPLSKGPVRISNWNQNLSSDQ 343
BLAST of mRNA_A-nodosum_M_contig10948.3.1 vs. uniprot
Match: UPI001455412D (exonuclease 3'-5' domain-containing protein 2-like isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI001455412D) HSP 1 Score: 60.8 bits (146), Expect = 7.670e-7 Identity = 42/131 (32.06%), Postives = 72/131 (54.96%), Query Frame = 1
Query: 433 VFGIDAEWSVWATGVR-PVAVVQLSTIEGYTVVFHIKPNERRVGVFPKALKELLENGDVPLAGVTVGHDLTLIRNSYNVEGTGEEDLGQLATKHLGIGVGSR---SLEDLCATLLGQRLSKG-NVRMSNWE 810
V G+D EW +G R P+A++QL+TI GY+V+ + + R P++L++LL N + GV V D + +++ G DL +A++H+ + S+ SL++L L + L K +VR +WE
Sbjct: 89 VIGLDCEWCSERSGKRRPIALLQLATISGYSVLIRLCKLDNRS--LPQSLRDLLANRSILKVGVAVLDDANHLLTDHHLPTRGCLDLRYVASRHMPRDLRSKFTGSLKNLADIFLNKTLDKSEDVRCGDWE 217
BLAST of mRNA_A-nodosum_M_contig10948.3.1 vs. uniprot
Match: A0A7R9ETC7_9NEOP (Hypothetical protein n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9ETC7_9NEOP) HSP 1 Score: 60.8 bits (146), Expect = 8.010e-7 Identity = 45/132 (34.09%), Postives = 62/132 (46.97%), Query Frame = 1
Query: 439 GIDAEWSVWATGVRPVAVVQLSTIEGYTVVFHIKPNERRVGVFPKALKELLENGDVPLAGVTVGHDLTLIRNSYNVEGTGEEDLGQLATKHLGIGVGSRSLEDLCATLLGQRLSKG-NVRMSNWEQALSDDQ 831
G D EW RPVA++QL++++G ++ + +V P LKELLE+ + GV D + Y V+ G DL LA H G + L L T LG +L K VR S+WE D Q
Sbjct: 79 GFDCEWVTERGSRRPVALLQLASLDGLCALYRLC----KVHYIPTQLKELLEDPSILKVGVAPSDDAKYLLADYGVKVRGCLDLRHLAKLH---GNSTGGLGSLAQTTLGVKLDKNWRVRCSDWEAQQLDAQ 203
BLAST of mRNA_A-nodosum_M_contig10948.3.1 vs. uniprot
Match: UPI001E270C6F (exonuclease 3'-5' domain-containing protein 2 n=1 Tax=Melitaea cinxia TaxID=113334 RepID=UPI001E270C6F) HSP 1 Score: 60.5 bits (145), Expect = 1.020e-6 Identity = 44/127 (34.65%), Postives = 63/127 (49.61%), Query Frame = 1
Query: 439 GIDAEWSVWATGVRPVAVVQLSTIEGYTVVFHIKPNERRVGVFPKALKELLENGDVPLAGVTVGHDLTLIRNSYNVEGTGEEDLGQLAT--KHLGIGVGSRSLEDLCATLLGQRLSKG-NVRMSNWE 810
G D EW PVA++QLST +GY +F + + P LK+LLE+GD+ GV+ G+D+ + Y+V D+ LA + G+GS L LLG L K +R S+WE
Sbjct: 72 GFDCEWVSDQGKKHPVALLQLSTNDGYCALFRLS----HLKSIPNCLKDLLEDGDIYKVGVSPGNDVKYLAKDYSVYTKSTLDIRHLAELCNYEPGGLGS-----LSKALLGIELDKSWRIRCSDWE 189
BLAST of mRNA_A-nodosum_M_contig10948.3.1 vs. uniprot
Match: UPI001568D0F9 (exonuclease 3'-5' domain-containing protein 2 n=2 Tax=Maniola TaxID=111919 RepID=UPI001568D0F9) HSP 1 Score: 60.5 bits (145), Expect = 1.020e-6 Identity = 54/175 (30.86%), Postives = 78/175 (44.57%), Query Frame = 1
Query: 313 SYKPIKIVVGSMDCDHTTLACTELLVSARRGASNVPGGVVVFGIDAEWSVWATGVRPVAVVQLSTIEGYTVVFHIKPNERRVGVFPKALKELLENGDVPLAGVTVGHDLTLIRNSYNVEGTGEEDLGQLATKHLGIGVGSRSLEDLCATLLGQRLSKG-NVRMSNWE-QALSDDQ 831
+Y I I+ DCD + + RR G D EW +PVA++QLST +GY +F + ++ PKAL++LL++ + GV D + Y V G D+ L HL G S L L +LLG L K +R S+WE + LS+ Q
Sbjct: 39 NYLTIDIISSEQDCD-------QAIDKLRRKCWEHHA----IGFDCEWVTEQGRRQPVALLQLSTFDGYCALFRLN----QIKTIPKALQDLLQDETIYKVGVAPKDDARYLSQDYGVYMEGTLDVRHLV--HL-CGYESGGLASLSKSLLGIVLDKTWRIRCSDWEAEQLSERQ 195
BLAST of mRNA_A-nodosum_M_contig10948.3.1 vs. uniprot
Match: UPI001182338E (Uncharacterized protein n=2 Tax=Manduca sexta TaxID=7130 RepID=UPI001182338E) HSP 1 Score: 60.1 bits (144), Expect = 1.370e-6 Identity = 51/128 (39.84%), Postives = 65/128 (50.78%), Query Frame = 1
Query: 439 GIDAEWSVWATGVR-PVAVVQLSTIEGYTVVFHIKPNERRVGVFPKALKELLENGDVPLAGVTVGHDLTLIRNSYNVEGTGEEDLGQLATKHLGIGVGSRSLEDLCATLLGQRLSKG-NVRMSNWEQA 816
G D EW V G R PVA+VQLS+I+G +F + + FP +LKELLE+ V GV D + + Y+V D+ +A K G+ G L L TLLG L K VR SNWE A
Sbjct: 69 GFDCEW-VTEHGTRNPVALVQLSSIDGLCGLFRLNC----MTSFPTSLKELLEDETVYKVGVAAADDAKYLYSDYSVSLQSTLDIRHIA-KLCGLETGG--LAFLAKTLLGITLDKSWRVRCSNWEAA 188
BLAST of mRNA_A-nodosum_M_contig10948.3.1 vs. uniprot
Match: UPI001C203DBA (exonuclease 3'-5' domain-containing protein 2 n=1 Tax=Aricia agestis TaxID=91739 RepID=UPI001C203DBA) HSP 1 Score: 58.5 bits (140), Expect = 4.410e-6 Identity = 42/125 (33.60%), Postives = 64/125 (51.20%), Query Frame = 1
Query: 439 GIDAEWSVWATGVRPVAVVQLSTIEGYTVVFHIKPNERRVGVFPKALKELLENGDVPLAGVTVGHDLTLIRNSYNVEGTGEEDLGQLATKHLGIGVGSRSLEDLCATLLGQRLSKG-NVRMSNWE 810
G D EW +PVA++QLST +G+ ++F + ++ + +LKELLE+ + GVT G+D +++ Y+V D+ L G L L A+LLG L K VR S+WE
Sbjct: 74 GFDCEWVTDNGHRQPVALLQLSTYDGFCLLFRLN----KLKLITGSLKELLEDDSLYKVGVTPGNDAKYLQHDYSVTLKSSLDIRHLVDF---CGYDDGGLAALSASLLGVVLDKSWRVRCSDWE 191
BLAST of mRNA_A-nodosum_M_contig10948.3.1 vs. uniprot
Match: A0A2H1VSX8_SPOFR (SFRICE_004621 n=3 Tax=Spodoptera TaxID=7106 RepID=A0A2H1VSX8_SPOFR) HSP 1 Score: 58.2 bits (139), Expect = 5.890e-6 Identity = 55/175 (31.43%), Postives = 79/175 (45.14%), Query Frame = 1
Query: 313 SYKPIKIVVGSMDCDHTTLACTELLVSARRGASNVPGGVVVFGIDAEWSVWATGVRPVAVVQLSTIEGYTVVFHIKPNERRVGVFPKALKELLENGDVPLAGVTVGHDLTLIRNSYNVEGTGEEDLGQLATKHLGIGVGSRSLEDLCATLLGQRLSKG-NVRMSNWE-QALSDDQ 831
+Y +KIV CD EL ++ + G D EW +PVA+VQLS+++GY +F + + P +LKELLE+ + GV D + N Y VE D+ LA ++ G G L L + LL L K VR S+WE + LS+ Q
Sbjct: 41 NYLTVKIVTTEESCDAVV---AELKKRCQKHRA--------LGFDCEWVTNNGKRQPVALVQLSSLDGYCGLFRLNT----LKTVPLSLKELLEDESIYKVGVGPKDDSKYLHNDYAVELRSSLDIRHLA-EYCGYEPGG--LASLSSVLLRATLDKSWRVRCSDWEAEELSERQ 197 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10948.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10948.3.1 >prot_A-nodosum_M_contig10948.3.1 ID=prot_A-nodosum_M_contig10948.3.1|Name=mRNA_A-nodosum_M_contig10948.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=223bp MKKSRCKLCICSFSQGAEVVFLTTSPCTVNTTAPLPPATRDSLPHVALPHback to top mRNA from alignment at A-nodosum_M_contig10948:12120..13109- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10948.3.1 ID=mRNA_A-nodosum_M_contig10948.3.1|Name=mRNA_A-nodosum_M_contig10948.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=990bp|location=Sequence derived from alignment at A-nodosum_M_contig10948:12120..13109- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10948:12120..13109- >mRNA_A-nodosum_M_contig10948.3.1 ID=mRNA_A-nodosum_M_contig10948.3.1|Name=mRNA_A-nodosum_M_contig10948.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=669bp|location=Sequence derived from alignment at A-nodosum_M_contig10948:12120..13109- (Ascophyllum nodosum dioecious)back to top |