mRNA_A-nodosum_M_contig1094.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1094.15.1
Unique NamemRNA_A-nodosum_M_contig1094.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1094.15.1 vs. uniprot
Match: A0A6H5JW81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW81_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 7.130e-41
Identity = 80/125 (64.00%), Postives = 91/125 (72.80%), Query Frame = 1
Query:   10 EAARLFNFTCVKLHPLDISDIEILEDVFPFVNTDDVVHNLELEKTDYNIVASNNNADAGHDLWAFWHDNRLKLPFWYNVAKDIALIQPSSAFMERVFCILRASLDERQKTSYSDRIGASALLKYN 384
            E ARL NFT VK H L+ SD+ IL +V PFV T  VV  L  E   YN+ A+    DAG DLWAFWHDNRLKL  WYNVAKD+ALIQPSSAFMERVF +LRA +D+RQ+    DRI A+ALLKYN
Sbjct:  277 EGARLLNFTFVKGHQLEESDVHILPEVLPFV-TPTVVAALVEEMDAYNVAAAE--TDAGCDLWAFWHDNRLKLSAWYNVAKDVALIQPSSAFMERVFSVLRACVDDRQEHCLLDRIEAAALLKYN 398          
BLAST of mRNA_A-nodosum_M_contig1094.15.1 vs. uniprot
Match: A0A6H5KSI8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI8_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.160e-40
Identity = 77/126 (61.11%), Postives = 94/126 (74.60%), Query Frame = 1
Query:   10 EAARLFNFTCVKLHPLDISDIEILEDVFPFVNTDDVVHNLELEKTDYNIVASNNNADAGHDLWAFWHDNRLKLPFWYNVAKDIALIQPSSAFMERVFCILRASLDERQKTSYSDRIGASALLKYNR 387
            +AAR+ NF  V  H ++ SD+ +L +VFPFV T  +VH L +EK  Y+  A+    D+G DLWAFWHDNR +LP WYNVAKD+ALIQPSSAFMERVF +LRA +DERQ+   SDRI AS LLKYNR
Sbjct:  386 KAARILNFRVVTGHGVEESDVHVLAEVFPFVTTA-MVHELVVEKDLYSTAAAG--TDSGCDLWAFWHDNRPELPAWYNVAKDVALIQPSSAFMERVFSLLRACMDERQEQCLSDRITASTLLKYNR 508          
BLAST of mRNA_A-nodosum_M_contig1094.15.1 vs. uniprot
Match: A0A6H5KPF8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF8_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.340e-40
Identity = 80/125 (64.00%), Postives = 90/125 (72.00%), Query Frame = 1
Query:   10 EAARLFNFTCVKLHPLDISDIEILEDVFPFVNTDDVVHNLELEKTDYNIVASNNNADAGHDLWAFWHDNRLKLPFWYNVAKDIALIQPSSAFMERVFCILRASLDERQKTSYSDRIGASALLKYN 384
            E ARL NFT VK H L+ SD+ IL +V PFV T  VV  L  E   YN+ A+    DAG DLWAFWHDNRLKL  WY VAKDIALIQPSSAFMERVF +LRA +D+RQ+    DRI A+ALLKYN
Sbjct:   28 EGARLLNFTFVKGHQLEESDVHILAEVLPFV-TPTVVAALVEEMDAYNVAAAE--TDAGCDLWAFWHDNRLKLSAWYKVAKDIALIQPSSAFMERVFSVLRACVDDRQEHCLLDRIEAAALLKYN 149          
BLAST of mRNA_A-nodosum_M_contig1094.15.1 vs. uniprot
Match: A0A6H5JIR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR3_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.730e-38
Identity = 80/130 (61.54%), Postives = 95/130 (73.08%), Query Frame = 1
Query:   10 EAARLFNFTCVKLHPLDISDIEILEDVFPFVNTDDVVHNLELEKTDYNIVASNNNADAGHDLWAFWHDNRLK--LPFWYNVAKDIALIQPSSAFMERVFCILRASLDERQKTSYSDRIGASALLKYNRGR 393
            EAARL +F  VK H L ++DI++L   FPFV  +DV   L+ +  DYNI AS    D G+DLW+FWHDNR K  L  WY VAKDI L+QPSSAFMERVF ILRA +D RQ+ S+SDR+ ASALLKYNRGR
Sbjct:  630 EAARLLDFRYVKQHQLHVADIDLLCR-FPFVTENDVAR-LKDQMDDYNIAASG--VDTGYDLWSFWHDNRHKSSLCHWYGVAKDIVLLQPSSAFMERVFSILRACMDARQEKSFSDRVAASALLKYNRGR 755          
BLAST of mRNA_A-nodosum_M_contig1094.15.1 vs. uniprot
Match: A0A6H5K4E0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4E0_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.660e-30
Identity = 62/129 (48.06%), Postives = 84/129 (65.12%), Query Frame = 1
Query:    7 VEAARLFNFTCVKLHPLDISDIEILEDVFPFVNTDDVVHNLELEKTDYNIVASNNNADAGHDLWAFWHDNRLKLPFWYNVAKDIALIQPSSAFMERVFCILRASLDERQKTSYSDRIGASALLKYNRGR 393
            +EAARL +FT ++ H    +++  L  VFPF++ ++ V  L  EK DY + A     D  +D W FW D++ KLP W+ V  DIAL+QPSSAFMERVF  + + LD  Q +  SDRI A+AL+KYNRGR
Sbjct:    1 MEAARLIDFTFMRRHKYSANEVRSLA-VFPFIS-EEQVDKLLTEKDDYYVAARV--TDRDYDFWQFWQDHKEKLPTWFAVVLDIALVQPSSAFMERVFSTVHSCLDSSQNSCLSDRIMAAALIKYNRGR 125          
BLAST of mRNA_A-nodosum_M_contig1094.15.1 vs. uniprot
Match: A0A6H5JEX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX4_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.040e-29
Identity = 66/128 (51.56%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   10 EAARLFNFTCVKLHPLDISDIEILEDVFPFVNTDDVVHNLELEKTDYNIVASNNNADAGHDLWAFWHDNRLKLPFWYNVAKDIALIQPSSAFMERVFCILRASLDERQKTSYSDRIGASALLKYNRGR 393
            +AA+L +FT +K        I  L+ V PFV    +V  L  EK D+ + AS+  A+ GH   AFW+DN+ KLP W+ +  D+AL+QPSSAFMERVF ILR   +ERQ+  YSDRI AS LLKYNRGR
Sbjct:   32 KAAKLTDFTFMKGRKYSDDTIRTLK-VLPFVKKK-MVRGLLKEKEDFYMAASDTEAEYGH--MAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILRCCFNERQEHVYSDRICASVLLKYNRGR 155          
BLAST of mRNA_A-nodosum_M_contig1094.15.1 vs. uniprot
Match: A0A6H5JZH8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 4.040e-29
Identity = 64/128 (50.00%), Postives = 85/128 (66.41%), Query Frame = 1
Query:   10 EAARLFNFTCVKLHPLDISDIEILEDVFPFVNTDDVVHNLELEKTDYNIVASNNNADAGHDLWAFWHDNRLKLPFWYNVAKDIALIQPSSAFMERVFCILRASLDERQKTSYSDRIGASALLKYNRGR 393
            +AA+L +FT +K H     +I  L  VFPFV+ DD++  L  EK D+ + A++   D  +D   FW DN+  LP W+ +  D+ L+QPSSAFMERVF ILR    ERQ++ YSDRI ASALLKY+RGR
Sbjct:  268 KAAKLTDFTYMKTHKYSNDEIRSLS-VFPFVD-DDMMDGLLKEKNDFYVAATD--TDTDYDNMTFWSDNKKNLPTWHELVLDVVLLQPSSAFMERVFSILRCCFSERQESVYSDRICASALLKYSRGR 391          
BLAST of mRNA_A-nodosum_M_contig1094.15.1 vs. uniprot
Match: A0A6H5KCX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.540e-27
Identity = 64/128 (50.00%), Postives = 82/128 (64.06%), Query Frame = 1
Query:   10 EAARLFNFTCVKLHPLDISDIEILEDVFPFVNTDDVVHNLELEKTDYNIVASNNNADAGHDLWAFWHDNRLKLPFWYNVAKDIALIQPSSAFMERVFCILRASLDERQKTSYSDRIGASALLKYNRGR 393
            +AA+L +F  +K        I  L+ V PFV +  +V  L  EK DY + AS+ + + GH   AFW DN  +LP W+ +  D+AL+QPSSAFMERVF IL    +ERQ+  YSDRI ASALLKYNRGR
Sbjct:   32 KAAKLTDFVFMKSKKYSDDTIRSLK-VLPFVKSK-MVKGLLKEKEDYYMAASDTDIEYGH--MAFWKDNEKRLPTWHALVLDVALLQPSSAFMERVFSILPCCFNERQEHVYSDRICASALLKYNRGR 155          
BLAST of mRNA_A-nodosum_M_contig1094.15.1 vs. uniprot
Match: A0A6H5JD81_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD81_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 6.830e-27
Identity = 66/128 (51.56%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   10 EAARLFNFTCVKLHPLDISDIEILEDVFPFVNTDDVVHNLELEKTDYNIVASNNNADAGHDLWAFWHDNRLKLPFWYNVAKDIALIQPSSAFMERVFCILRASLDERQKTSYSDRIGASALLKYNRGR 393
            +AA+L +FT +K        I  L+ V PFV    +V  L  EK D+ + AS+  A+ GH   AFW+DN+ KLP W+ +  D+AL+QPSSAFMERVF ILR   +ERQ+  YSDRI AS LLKYNRGR
Sbjct:  560 KAAKLTDFTFMKGRKYSDDTIRTLK-VLPFVKKK-MVRGLLKEKEDFYMAASDTEAEYGH--MAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILRCCFNERQEHVYSDRICASVLLKYNRGR 683          
BLAST of mRNA_A-nodosum_M_contig1094.15.1 vs. uniprot
Match: A0A6H5KTX0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 7.020e-27
Identity = 66/128 (51.56%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   10 EAARLFNFTCVKLHPLDISDIEILEDVFPFVNTDDVVHNLELEKTDYNIVASNNNADAGHDLWAFWHDNRLKLPFWYNVAKDIALIQPSSAFMERVFCILRASLDERQKTSYSDRIGASALLKYNRGR 393
            +AA+L +FT +K        I  L+ V PFV    +V  L  EK D+ + AS+  A+ GH   AFW+DN+ KLP W+ +  D+AL+QPSSAFMERVF ILR   +ERQ+  YSDRI AS LLKYNRGR
Sbjct:  643 KAAKLTDFTFMKGRKYSDDTIRTLK-VLPFVKKK-MVRGLLKEKEDFYMAASDTEAEYGH--MAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILRCCFNERQEHVYSDRICASVLLKYNRGR 766          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1094.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JW81_9PHAE7.130e-4164.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI8_9PHAE1.160e-4061.11Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KPF8_9PHAE2.340e-4064.00Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JIR3_9PHAE2.730e-3861.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4E0_9PHAE1.660e-3048.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JEX4_9PHAE2.040e-2951.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZH8_9PHAE4.040e-2950.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCX4_9PHAE2.540e-2750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD81_9PHAE6.830e-2751.56Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTX0_9PHAE7.020e-2751.56Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1094contigA-nodosum_M_contig1094:102964..103362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size399
Hectar predicted targeting categoryother localisation
Exons1
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866478.8691714-CDS-A-nodosum_M_contig1094:102963..1033621680866478.8691714-CDS-A-nodosum_M_contig1094:102963..103362Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1094 102964..103362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1094.15.1prot_A-nodosum_M_contig1094.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1094 102964..103362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1094.15.1

>prot_A-nodosum_M_contig1094.15.1 ID=prot_A-nodosum_M_contig1094.15.1|Name=mRNA_A-nodosum_M_contig1094.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=133bp
MYVEAARLFNFTCVKLHPLDISDIEILEDVFPFVNTDDVVHNLELEKTDY
NIVASNNNADAGHDLWAFWHDNRLKLPFWYNVAKDIALIQPSSAFMERVF
CILRASLDERQKTSYSDRIGASALLKYNRGRK*
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mRNA from alignment at A-nodosum_M_contig1094:102964..103362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1094.15.1 ID=mRNA_A-nodosum_M_contig1094.15.1|Name=mRNA_A-nodosum_M_contig1094.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at A-nodosum_M_contig1094:102964..103362- (Ascophyllum nodosum dioecious)
ATGTATGTCGAGGCTGCAAGACTCTTCAACTTTACTTGCGTGAAGCTGCA CCCTCTAGACATCTCGGATATCGAGATCCTCGAAGACGTGTTTCCCTTCG TAAACACTGACGACGTCGTCCACAACCTCGAACTCGAAAAAACCGACTAC AACATCGTCGCGTCTAATAATAATGCGGATGCTGGGCACGACCTGTGGGC TTTTTGGCATGACAACAGGCTGAAGCTTCCTTTTTGGTACAATGTAGCGA AGGACATTGCGTTGATTCAGCCATCTTCTGCTTTCATGGAGCGAGTATTT TGTATCCTTCGCGCGTCCTTGGACGAGAGGCAAAAAACTTCCTATAGCGA CCGAATTGGGGCGTCGGCCTTGCTCAAGTACAACAGGGGAAGAAAATAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1094:102964..103362-

>mRNA_A-nodosum_M_contig1094.15.1 ID=mRNA_A-nodosum_M_contig1094.15.1|Name=mRNA_A-nodosum_M_contig1094.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=399bp|location=Sequence derived from alignment at A-nodosum_M_contig1094:102964..103362- (Ascophyllum nodosum dioecious)
ATGTATGTCGAGGCTGCAAGACTCTTCAACTTTACTTGCGTGAAGCTGCA
CCCTCTAGACATCTCGGATATCGAGATCCTCGAAGACGTGTTTCCCTTCG
TAAACACTGACGACGTCGTCCACAACCTCGAACTCGAAAAAACCGACTAC
AACATCGTCGCGTCTAATAATAATGCGGATGCTGGGCACGACCTGTGGGC
TTTTTGGCATGACAACAGGCTGAAGCTTCCTTTTTGGTACAATGTAGCGA
AGGACATTGCGTTGATTCAGCCATCTTCTGCTTTCATGGAGCGAGTATTT
TGTATCCTTCGCGCGTCCTTGGACGAGAGGCAAAAAACTTCCTATAGCGA
CCGAATTGGGGCGTCGGCCTTGCTCAAGTACAACAGGGGAAGAAAATAA
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