mRNA_A-nodosum_M_contig10904.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10904.4.1
Unique NamemRNA_A-nodosum_M_contig10904.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10904.4.1 vs. uniprot
Match: A0A6H5L6P2_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6P2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 8.730e-19
Identity = 68/121 (56.20%), Postives = 83/121 (68.60%), Query Frame = 3 
Query:    3 RGGDIWMLTRALEELISRAKATA------GEAAGRGRVAGALANPAXXXXXXXXXXXAGPNALAPSAVDEAETVLECLSSLLPALEEASRMAAKLPECSNTHDFDRARQVLLTFGIGGNDR 347
            RGGD+W+LTRALEE+      T       GE AG GR+ GA     XXXXXXXXXXX   N LAPSA+ EAE++LECL+ L+P LEEA  +A +L +CS+T DFDR+RQ LL  G+  NDR
Sbjct:  162 RGGDVWVLTRALEEVSDGEVPTGVERGREGEEAG-GRMRGAXXXXXXXXXXXXXXXXXX-NTLAPSALAEAESLLECLAELMPTLEEAFGLADELSQCSSTQDFDRSRQTLLVPGVRNNDR 280
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BLAST of mRNA_A-nodosum_M_contig10904.4.1 vs. uniprot
Match: D7FRK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK4_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.970e-9
Identity = 51/86 (59.30%), Postives = 59/86 (68.60%), Query Frame = 3 
Query:    3 RGGDIWMLTRALEELISRAKATAGEAAGRGRVAGALANPAXXXXXXXXXXXAGPNALAPSAVDEAETVLECLSSLLPALEEASRMA 260
            RGGD+W+LTRALEEL + A     EAAG  R AG      XXXXXXXXXX    N LAPSA  EAE++LECL+ L+P LEEA  +A
Sbjct:  142 RGGDVWVLTRALEELTAHASMPMEEAAGGMRGAGGXXXXXXXXXXXXXXXA---NTLAPSAFAEAESLLECLTELMPTLEEAFGLA 224
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10904.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6P2_9PHAE8.730e-1956.20AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
D7FRK4_ECTSI4.970e-959.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10904contigA-nodosum_M_contig10904:10470..12818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size350
Hectar predicted targeting categoryother localisation
Exons3
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866477.382977-UTR-A-nodosum_M_contig10904:10469..104891680866477.382977-UTR-A-nodosum_M_contig10904:10469..10489Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10904 10470..10489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866477.393752-CDS-A-nodosum_M_contig10904:10489..105131680866477.393752-CDS-A-nodosum_M_contig10904:10489..10513Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10904 10490..10513 +
1680866477.404444-CDS-A-nodosum_M_contig10904:11061..112831680866477.404444-CDS-A-nodosum_M_contig10904:11061..11283Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10904 11062..11283 +
1680866477.413003-CDS-A-nodosum_M_contig10904:12734..128181680866477.413003-CDS-A-nodosum_M_contig10904:12734..12818Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10904 12735..12818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10904.4.1prot_A-nodosum_M_contig10904.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10904 10490..12818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10904.4.1

>prot_A-nodosum_M_contig10904.4.1 ID=prot_A-nodosum_M_contig10904.4.1|Name=mRNA_A-nodosum_M_contig10904.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=110bp
MLTRALEELISRAKATAGEAAGRGRVAGALANPAAAAAAAAVAAAAGPNA
LAPSAVDEAETVLECLSSLLPALEEASRMAAKLPECSNTHDFDRARQVLL
TFGIGGNDR*
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mRNA from alignment at A-nodosum_M_contig10904:10470..12818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10904.4.1 ID=mRNA_A-nodosum_M_contig10904.4.1|Name=mRNA_A-nodosum_M_contig10904.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2349bp|location=Sequence derived from alignment at A-nodosum_M_contig10904:10470..12818+ (Ascophyllum nodosum dioecious)
TTCGGGGCGGGGACATTTGGATGCTGACGCGGGCGCTCGAGGAGGTCAGG
GGAGGGAAACATTACATTCTTCTGACCACCAGTATAAGTTTGTCGATTGG
TGGGCGGGTGGGTATGAACTCTTAAAACGAGGTTACAGCGAGGGTTATCA
TAATCGAAAGACCTAAAAGCCCTCGCTTGGTTATTGCCCTAGCCTCAGCC
CCCAGCTTCAGTAGCTTTTAAGAGCCGGGAGGAGGAGCCTTGGGGGGAGG
CCGCTGAGTTTCACTCTTCTCCTTGCAAAAGGCTGCGCCTCCTTGGTTTC
CTTGTGTCTCTTCAGCAGAAGGTCTTGAAGGGTGTACGGGCGTTAGCGCA
GCACATGCACCGTTTTGTGCAGCAGCGTTTGGGTGCGCACCGCTACGGAT
AAATTACCAAAAAATATTCACCAGAGTGGATCTAAATATATACATAGACT
CTGCAAACCCTCTTTTTAGGCGACGCGATTCACTTTCATCCAAGACCGAC
GACAGGAAAAATAAATGAATAAAAAAAGCGCGACGGTTATCAAACCGTCC
CCGCGGTTGTTGGTGTGTTGTCTTCCCTCCCTATCCTCACAGTTGATATC
CCGCGCCAAGGCGACCGCGGGAGAAGCGGCCGGAAGGGGAAGGGTGGCTG
GCGCTCTCGCGAATCCCGCTGCTGCTGCTGCTGCTGCTGCAGTGGCGGCT
GCCGCCGGACCGAACGCACTGGCGCCTTCCGCGGTGGATGAGGCGGAGAC
GGTCTTGGAGTGCTTGTCGAGTCTTCTTCCGGCGCTCGAGGAAGCCTCAA
GGATGGCGGCCAAGGTGATGAAAGATAGAGCTCTCTCTACATATTTTTGC
GTCTACAGATAGGGCGTAGACGAGTTTAGTTGGTTGTGTTGTTGTTGTTG
TTGTTGTTGATTCACACATTCAGCGTATTGTCCTTGCAACTGAAGAAACT
ACGGTGACACAACAAGTCAGCCATAGACCTATCAAATGCCAATCCCGCTT
GTGGTCACAAAGAGGTACGAAGGTCAACGGGTCACATCATGGTGACAACC
CGCTACTCAGACCAAAGGGATCCAAATCGCGACAAAAAGTTATGCGGCTC
TACAAGCAATGGCACCGACCAATATCAAAACGGTTCATCAAACCTCCTTA
CTCCATATCGAGAGCAACCTCGATCGACTCGGAATGTTGTCGCCTACCCA
CGACCAACGTTCTCAGCAAAAAACCGGAAAAATTACGGAAAAATTACGCT
CCAACCAGTTTTGATCAACAAGTCCAAGATTCTCAAGGCCACACATTGTA
CAGAAATAAGAAAAAATGAAATACCGAGGTCCATGGTGGTGGAGGCCTTG
AGCTGGCGAAGCCGGCGCGCGAGCCAGCATCCAGCCGTCCAAAGCCCTGT
GCATCCTTGAAAAAGCCCCACGAATCTTGCCCGTTCGCCGCTCCTTGTGG
CCCTCGTAGGAAGAAAAATGACGACCGTGGTCAGACATCAGCTTTTCCCT
CAGAAACCTCCCGGTTCAAGCCTGTGATTCTCGCGCACAGGGGTTCAGCC
CTCCCCTGGCTCGTCGACGATCGAGCTACCCTCCGCCTTCGCCGAATCTG
GTGCGTACCCACCCGATAGAGAACTACCGGGCTCTCCGCGACAGTGCTCC
CTGCCTCTCGCGTGCCGCCACCCTCCCGAAGGCCACCAAATTGGGGCTCG
GAAGAGGTGCGCACCTGGGAACACCATCATCCTCAGCCAACCAAACCGCC
GCCGCGTCTCAACCGACAGGCTGAATCGCGAAGGCAGCCAGTTGACTGCA
TCTCTTGAGGGTGAGCCCGGCCCTACACCCGCCGGAAAGACCCTCCCACA
CTCATACCCCAAAACCAGGTTTCGGAGGGAGAGGGCACGAGAGCTATGTT
TTATTCATTGAGCGAGGGGTGGAGTGCGCTGGAATCGCGAAGGTATTTTC
CCCTGAGGTTCAATATGCACGAAAACATATATATATATACCAGGGTATAT
AATAAGGGCGTGCGGGTGAGCAATGGTGGGAAATTGTGCTCATTGACTTT
TTGCGCGTTGGGTGCGAAGCATCATCGGTCGCTCGACACTTGACCGTTCA
CGGTCTTCCCTTATGTGGTGTGCGTTCTTGCCTCGACGTGGTCCCCTACG
TCGATCAACGTATCTCCTTACGATGATGTCACCCCTCTCTCCGTCGTGCC
GTTCTCTACCGTGGCAACACCCTCCACTACGGCTACCACCGTCTCTGACA
TCGTCTGTGGAACAGCTCCCCGAATGCAGTAACACTCACGACTTCGATCG
AGCGCGTCAGGTTTTGCTGACTTTTGGCATAGGGGGCAACGACCGGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10904:10470..12818+

>mRNA_A-nodosum_M_contig10904.4.1 ID=mRNA_A-nodosum_M_contig10904.4.1|Name=mRNA_A-nodosum_M_contig10904.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at A-nodosum_M_contig10904:10470..12818+ (Ascophyllum nodosum dioecious)
ATGCTGACGCGGGCGCTCGAGGAGTTGATATCCCGCGCCAAGGCGACCGC
GGGAGAAGCGGCCGGAAGGGGAAGGGTGGCTGGCGCTCTCGCGAATCCCG
CTGCTGCTGCTGCTGCTGCTGCAGTGGCGGCTGCCGCCGGACCGAACGCA
CTGGCGCCTTCCGCGGTGGATGAGGCGGAGACGGTCTTGGAGTGCTTGTC
GAGTCTTCTTCCGGCGCTCGAGGAAGCCTCAAGGATGGCGGCCAAGCTCC
CCGAATGCAGTAACACTCACGACTTCGATCGAGCGCGTCAGGTTTTGCTG
ACTTTTGGCATAGGGGGCAACGACCGGTGA
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