mRNA_A-nodosum_M_contig1090.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1090.4.1
Unique NamemRNA_A-nodosum_M_contig1090.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1090.4.1 vs. uniprot
Match: A0A6H5KPD8_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD8_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.300e-15
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 DEQMVKCTALFSRGIQRYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFTGD 156
            DEQMVK TA     + RYN  KPIKHGIKCWA CC SGY +V  +DGGF+GD
Sbjct:  130 DEQMVKSTARVMLALMRYNKAKPIKHGIKCWAICCPSGYSFVQSIDGGFSGD 181
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BLAST of mRNA_A-nodosum_M_contig1090.4.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.350e-15
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 DEQMVKCTALFSRGIQRYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFTGD 156
            DEQMVK TA     + RYN  KPIK+GIKCWA CC SGYC+V  +DGGF+GD
Sbjct:   64 DEQMVKSTARVMFALMRYNKAKPIKNGIKCWAICCPSGYCFVQSIDGGFSGD 115
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BLAST of mRNA_A-nodosum_M_contig1090.4.1 vs. uniprot
Match: A0A6H5JHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.790e-14
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 DEQMVKCTALFSRGIQRYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFTGD 156
            DEQMVK TA     + R+N  KPIK GIKCWA CC SGYC+V  +DGGF+GD
Sbjct:  227 DEQMVKSTARVMFMLMRFNKSKPIKLGIKCWAICCPSGYCFVQSIDGGFSGD 278
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BLAST of mRNA_A-nodosum_M_contig1090.4.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.880e-13
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 DEQMVKCTALFSRGIQRYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFTGD 156
            DEQMVK TA     + R+N  KPIK GIK WA CC SGYC+V  +DGGF+GD
Sbjct:   26 DEQMVKSTARAMFALMRFNKTKPIKTGIKGWAICCPSGYCFVQSIDGGFSGD 77
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BLAST of mRNA_A-nodosum_M_contig1090.4.1 vs. uniprot
Match: A0A6H5K5P5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P5_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.310e-12
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 DEQMVKCTALFSRGIQRYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFTGD 156
            DEQMVK TA    G+ R+NP KPIKHGIK +A  C +GYCY+  +DGGF GD
Sbjct:  367 DEQMVKGTARAMHGLMRFNPQKPIKHGIKRFACWCWTGYCYLQSIDGGFYGD 418
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BLAST of mRNA_A-nodosum_M_contig1090.4.1 vs. uniprot
Match: A0A6H5KS27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS27_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 8.250e-11
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 DEQMVKCTALFSRGIQRYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFTGD 156
            DEQMVK  + ++  + R+ P KPI HG+K  A C V GYC+VS VDGGF+GD
Sbjct:  106 DEQMVKTVSRYAHFLIRHQPKKPITHGMKMLAICDVEGYCFVSSVDGGFSGD 157
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BLAST of mRNA_A-nodosum_M_contig1090.4.1 vs. uniprot
Match: A0A6H5KGW0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW0_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.170e-7
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   49 RYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFT 150
            R+N  KPIK GIK WA CC SGYC+V  +DGGF+
Sbjct:    2 RFNKAKPIKTGIKGWAICCPSGYCFVQSIDGGFS 35
[Close]
BLAST of mRNA_A-nodosum_M_contig1090.4.1 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 5.900e-6
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1 
Query:   79 GIKCWAACCVSGYCYVSCVDGGFTGD 156
            GIKCWA CC SGYC+V  +DGGF+GD
Sbjct:  164 GIKCWAGCCPSGYCFVQSIDGGFSGD 189
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1090.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KPD8_9PHAE1.300e-1565.38DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KQZ5_9PHAE1.350e-1565.38DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JHH7_9PHAE5.790e-1463.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG44_9PHAE2.880e-1361.54DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5K5P5_9PHAE1.310e-1261.54DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KS27_9PHAE8.250e-1155.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGW0_9PHAE6.170e-764.71DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JC56_9PHAE5.900e-673.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1090contigA-nodosum_M_contig1090:13837..14170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866476.7702217-UTR-A-nodosum_M_contig1090:13836..138451680866476.7702217-UTR-A-nodosum_M_contig1090:13836..13845Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1090 13837..13845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866476.7789648-CDS-A-nodosum_M_contig1090:13845..139151680866476.7789648-CDS-A-nodosum_M_contig1090:13845..13915Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1090 13846..13915 +
1680866476.7902606-CDS-A-nodosum_M_contig1090:14093..141701680866476.7902606-CDS-A-nodosum_M_contig1090:14093..14170Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1090 14094..14170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1090.4.1prot_A-nodosum_M_contig1090.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1090 13846..14170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1090.4.1

>prot_A-nodosum_M_contig1090.4.1 ID=prot_A-nodosum_M_contig1090.4.1|Name=mRNA_A-nodosum_M_contig1090.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=49bp
MVKCTALFSRGIQRYNPLKPIKHGIKCWAACCVSGYCYVSCVDGGFTGD
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mRNA from alignment at A-nodosum_M_contig1090:13837..14170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1090.4.1 ID=mRNA_A-nodosum_M_contig1090.4.1|Name=mRNA_A-nodosum_M_contig1090.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=334bp|location=Sequence derived from alignment at A-nodosum_M_contig1090:13837..14170+ (Ascophyllum nodosum dioecious)
GACGAACAGATGGTCAAGTGCACAGCGCTCTTCTCTCGAGGCATTCAGCG
GTATAATCCACTCAAGCCCATCAAGCATGGTGAGTTTTTTTACATAAACA
GATTGGGAAGCTATGTATCCACCGCAGCATCATGTAAAAAGTGAGAAGAA
TATGGGTTCAGAGCCATCATGATCACAGTCGGGGCAGTCCAATAGTTTAC
ATCCAAATTTGACATCCATACACACACCTGCTCGTAACTGCGTACTGTAC
ATTCCAGGAATAAAGTGTTGGGCAGCCTGCTGCGTATCTGGCTATTGCTA
CGTCTCCTGCGTCGATGGCGGTTTCACGGGCGAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1090:13837..14170+

>mRNA_A-nodosum_M_contig1090.4.1 ID=mRNA_A-nodosum_M_contig1090.4.1|Name=mRNA_A-nodosum_M_contig1090.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=147bp|location=Sequence derived from alignment at A-nodosum_M_contig1090:13837..14170+ (Ascophyllum nodosum dioecious)
ATGGTCAAGTGCACAGCGCTCTTCTCTCGAGGCATTCAGCGGTATAATCC
ACTCAAGCCCATCAAGCATGGAATAAAGTGTTGGGCAGCCTGCTGCGTAT
CTGGCTATTGCTACGTCTCCTGCGTCGATGGCGGTTTCACGGGCGAT
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