mRNA_A-nodosum_M_contig109.7.4 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig109.7.4
Unique NamemRNA_A-nodosum_M_contig109.7.4
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig109.7.4 vs. uniprot
Match: A0A6H5KCA8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCA8_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 2.560e-113
Identity = 174/309 (56.31%), Postives = 219/309 (70.87%), Query Frame = 3
Query:  480 LLGKIFPSESILPTSHPSMGLRLAGLTGHDEKWWEPIKVMYSHNRPNVTDAIGLPPTKQPRLLYVIRNPVLHKASIYFESVCRFGRHIKADGKIDQEDATLVRMESDPM----YSFCRDAAAWLDSPMFFKVYRNMQTKWLSYGSAKRHPCIEKNPELSLWNANGGAEIEGVDCVDLKAKGRDEEIWEEYFSRTADAAIKRLERGMWVGVTERMEEAVCLLLFTLGKAWYPLGNLRHKEPRPISVWSEAAIAKVDRTDRADWRLFDAANEILDLRLWTARERLEHTDQEERERLGQ-CFDVLAGA*NQG 1391
            LL  +FP  +++PTSHPS GLR+  L GHD +WW+P ++M+SHNR NVTD IG+PPTK PR+L  IRNP+LHKASI+FESVCRFG+HI  +G IDQE ATL R+    +    Y+FCRD   W+ S  F KVYRN + +WLSYG+A+ HPCI  +PE + W  +   ++ G  C  +KA G+D ++W  YF RTADAAI+R+E  +WVGVTERMEE++CLL  TLGK    +   R K PRPI+VW E A  K    DRADWR+F+AAN+ LDLRLWTARERL+   +EER RLG  CF VLAG    G
Sbjct:  124 LLANVFPRTALVPTSHPSKGLRVNHLQGHDSEWWKPFQLMFSHNRANVTDTIGIPPTKTPRVLITIRNPLLHKASIFFESVCRFGQHISDNGTIDQEAATLARVNGKGVETEQYNFCRDPEMWVGSKQFDKVYRNFEARWLSYGAAEGHPCIRPDPEFNRWRVDD-TDVGGT-CKAIKASGQDADVWAAYFERTADAAIRRMEGALWVGVTERMEESLCLLFLTLGKKESEMPQHRLKTPRPITVWHEKAKEKAASYDRADWRVFEAANDFLDLRLWTARERLKSAGEEERARLGDHCFQVLAGKDGNG 430          
BLAST of mRNA_A-nodosum_M_contig109.7.4 vs. uniprot
Match: D8LDK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK9_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 3.410e-43
Identity = 84/163 (51.53%), Postives = 113/163 (69.33%), Query Frame = 3
Query:  891 SYGSAKRHPCIEKNPELSLWNANGGAEIEGVDCVDLKAKGRDEEIWEEYFSRTADAAIKRLERGMWVGVTERMEEAVCLLLFTLGKAWYPLGNLRHKEPRPISVWSEAAIAKVDRTDRADWRLFDAANEILDLRLWTARERLEHTDQEERERLGQ-CFDVLAG 1376
            ++    +H C+  +  +      GG   +   C  LKA G+   I EEY+ R A++AIKRL  G+WVGVTER +EA CLL  TLGK    +G+ RHKEPRPISVW EAA++KV + D+ADW++F+AAN+ILDLR+WTARERL+H  +EE ERLG+ C +V+ G
Sbjct:  126 AHNEEDKHRCVYGHAWVKP--EKGGDHHDEESCNSLKASGKHNAILEEYYDRMAESAIKRLGDGLWVGVTERSDEADCLLFLTLGKGSTGMGSYRHKEPRPISVWHEAAMSKVTQYDQADWKVFNAANDILDLRIWTARERLKHAGEEELERLGKHCVNVING 286          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig109.7.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCA8_9PHAE2.560e-11356.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LDK9_ECTSI3.410e-4351.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig109contigA-nodosum_M_contig109:603318..612101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LM89
Model size2774
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue2.62e-123
EggNOG OGs2F011@1|root,2T197@2759|Eukaryota
Cds size906
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig109.7.4prot_A-nodosum_M_contig109.7.4Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig109 604710..611625 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866475.5774634-UTR-A-nodosum_M_contig109:603317..6047091680866475.5774634-UTR-A-nodosum_M_contig109:603317..604709Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig109 603318..604709 -
1680866475.8441253-UTR-A-nodosum_M_contig109:611625..6121011680866475.8441253-UTR-A-nodosum_M_contig109:611625..612101Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig109 611626..612101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866475.6455808-CDS-A-nodosum_M_contig109:604709..6047901680866475.6455808-CDS-A-nodosum_M_contig109:604709..604790Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig109 604710..604790 -
1680866475.6606753-CDS-A-nodosum_M_contig109:605371..6054731680866475.6606753-CDS-A-nodosum_M_contig109:605371..605473Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig109 605372..605473 -
1680866475.6729999-CDS-A-nodosum_M_contig109:605864..6060321680866475.6729999-CDS-A-nodosum_M_contig109:605864..606032Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig109 605865..606032 -
1680866475.6811655-CDS-A-nodosum_M_contig109:606623..6067761680866475.6811655-CDS-A-nodosum_M_contig109:606623..606776Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig109 606624..606776 -
1680866475.688854-CDS-A-nodosum_M_contig109:608910..6090411680866475.688854-CDS-A-nodosum_M_contig109:608910..609041Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig109 608911..609041 -
1680866475.8108835-CDS-A-nodosum_M_contig109:610451..6106051680866475.8108835-CDS-A-nodosum_M_contig109:610451..610605Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig109 610452..610605 -
1680866475.8347006-CDS-A-nodosum_M_contig109:611508..6116251680866475.8347006-CDS-A-nodosum_M_contig109:611508..611625Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig109 611509..611625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig109.7.4

>prot_A-nodosum_M_contig109.7.4 ID=prot_A-nodosum_M_contig109.7.4|Name=mRNA_A-nodosum_M_contig109.7.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=302bp
MLLGKIFPSESILPTSHPSMGLRLAGLTGHDEKWWEPIKVMYSHNRPNVT
DAIGLPPTKQPRLLYVIRNPVLHKASIYFESVCRFGRHIKADGKIDQEDA
TLVRMESDPMYSFCRDAAAWLDSPMFFKVYRNMQTKWLSYGSAKRHPCIE
KNPELSLWNANGGAEIEGVDCVDLKAKGRDEEIWEEYFSRTADAAIKRLE
RGMWVGVTERMEEAVCLLLFTLGKAWYPLGNLRHKEPRPISVWSEAAIAK
VDRTDRADWRLFDAANEILDLRLWTARERLEHTDQEERERLGQCFDVLAG
A*
back to top

mRNA from alignment at A-nodosum_M_contig109:603318..612101-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig109.7.4 ID=mRNA_A-nodosum_M_contig109.7.4|Name=mRNA_A-nodosum_M_contig109.7.4|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8784bp|location=Sequence derived from alignment at A-nodosum_M_contig109:603318..612101- (Ascophyllum nodosum dioecious)
GCGGAGATTCCGGAGTACAATCCCCGGACGGACGTGGTGTTCTATAGCCA CATCCACAAGACCTCGGGAACTTCCTTGAGGTGATGTGAAGGGCCCATTT CATTCTTTTTCCTACTATTAGAATTTGATAACTTGACATCATCAATCAGT GCGAATCAAAGGATACCTGGTACTTTGATAACAGTCTCTTATTGTACGAA ATACAGCCTTGGAAACGCATCGCTCGCAAGCAGAGCTCTAGACACAGGCA CGGCACGCCCACGAACAAAACCCCATCGTCGTGACCACGGCTCCATGCAC TCTACTCTCCTTCAGCCCCATGTACGTGTAGGCTGGAAACCTCGCGTCGT AATATTGTCTTGGTTGGCACTCATCACTACTGTGGGGCAAGTTGAAAAAA TAAGTTCCCTCTACCCCTTGAAAAAAACGCCTCCTTGGAGTCGGTAAGCC CCCCTTCTTCTTTTCCTTGGGACAGTATGTTACTTGGCAAGATCTTTCCG AGCGAATCCATTCTGCCAACGTCTCACCCGTCCATGGGGCTTCGCTTGGC CGGCTTGACGGGACACGACGAGAAGTGGTGGGAGCCGATCAAGGTGGGGG ATGTACACCTCCCCTCCCCTCCCCTTCCTCCCCTTGTGTGTAGAGAAATG AAAATAAATAAAAAATAGTAATATTTGCGCGCGTCAGGTTTTTTGCCCAG AGGAGGAAGGGATCTTGGGGAATTACCAGATGTATAGATTGAGTGTTTCC CCCTCTTCCCCCCCTCTTGTGTGTAGAGAAATGAAAAAAAAGTAATATTT GCGCGTCAGGTTTTTTGCCCTCAGGAGGAAGGGATCTTGGGGAATTACAA GATATGTGGACTTGAGTGTTTACCGTCTGTTGTCGACTTTTTTCCCAGTA TTCTCCGACAGCGCTTATTGCCTGTTACGGTAATGGTCGATGCGTCTGCG GCATTAGCTTGGTTTTTGTACTGTTTTTTGTATTGTTTTCTGTATTGCTT TTTGTACTGGTTTTTGTACTGGTTTTTGTATTACTTTTGTATTGATTTTT GTATTGTTTTTTGTACCGTTTTTTGTACTGGTTTTTGTATTGGTTTTTGT ATTGGTTTTTGTATTGGTTCTGCTTTTTTTTTGTCTTGGTGTGGGTTGGG TGGGTTAGGGCGGATAGGTGCGCCCCGAGTCTGTTTGTGCTTGACGGACG TTTATTTTTAGTTTCTTTTACACCCGAAGTTTTTTGTTGTTGTTGAGGGG GGGGGGGGGAGTCCGTCCGTAAATCACCCAGTTTGGAATCCTACCGGCTG CTGCTCTATTCAGCGTTGCATGATTGGACAACCAAAAAACGTACTGCCTT AACAGCGCTCATTTTCCACGTCGAGATACGGCTGCTAATGCGGCTGCTGC TACAAGGTAACACCGAATCTCCGCACGATCCCTCGCCCGTGGTGACTACT ATTAATACCCCCTTCCCCCCCTCCCAAATGTTGCCACCCGCACCAGGTGA TGTACTCCCACAACAGACCCAACGTTACAGACGCCATCGGGCTCCCGCCC ACGAAGCAACCGCGGCTGCTGTACGTAATCCGGAATCCCGTTCTGCACAA GGCCTCCATCTACTTTGAGTCCGTCTGCAGATTCGGGCGACACATAAAGG GTTGAGTGAATCGGTTTGAGGGAGCGGTTTGAGGGAACGATTGAGAAGAG GGTTGAGTGATGGGTGCTGTGCGGTGTCGTGTCTTTTTTTGGTCCCGTGG TACTGGCTTGCCGCGTTGTTGTTCTTACCCCGCCGAGCATAGGGCCGCCG CAGTGTGCGCGCGCACCCGATTGGGCATGAAATGTGGTATTCTTTTTGGC CGTTTCGATCGCCGCAGTAGCAGCGGGTCACAGCAGCCAGTAGCTGTCAT TGTTTGTCGGTGCGAACAAACTGCGGTGCCGTTTCCTTTGAGCAAGAAGA GACAGATCGCGAACATGCAATCATCAACCCCCCCCCCCCCCCTTTCCCAC CCCCCAACCAAAAAACAACTTCCTTTCGAAGGATTTGTAAAATATTACCC TCTCAACTTCTGATAAAAACAACATCTTAAGGCTTGCTTCTCCTTCCCAT ACCTGCAAGTTTCGACCTCAATGATCGCTCGCGGGTAATCGTGCCTGCTG GCCACAACCGGAGGATGTTTGTTTTTGTTTTCGGGGAGGAATCCAGCGCC ACCAGCCGCTTTTTTTGGAGGGGGGGGAGGTTTTGTGTGTGTTTGTGCGT GCGTGCGTGTGTGTTTTTTCTCATTTTGTCTTTTGACACTATTATACCGA AATTTCTACGAGCCTGCTTCAATTTCTGGGAGCGAGGGAACGTCAGTAGA GAACTAAAAACCCTTACAAAAACTATATTATTAGCACACAAGTGTTTTGA GGGGGAGCTTACCCCCCCCCCGTCCCCCTCCCCAAACTTTTTTTTTTTTC AAACGCCGAACCGGGAAGAACGGCTTGTTTTGTATTGTACGTACAATACA GTACAGTATCGCATGGTTCTTCGCCAAAAGTTACGCAAACCCTCGTTCTT CACTCGCCCGGCGCGTTTTCCCTAGGTTTTTGCTAGAGAACTACGTGTAT GTTACCGACGAAAGCGTTTTGTTTTGTAGAGCTACATGTATGTTACCGAC GAAGACATTCGGTTTCTTGGAAAGAGGAACACTCTGACCGCCCATGTAAG AAAGTGTCCAATCAAGTAAGGATATTGACAAGTTATAATTATTATTCCTC ACCACGGCATGGCAAGTGTCGCTATCGACGAGTTGGCCCTTTTCGGGACT TGAACTACTTCTCCCCCATCCCCCTTATCTCATTCACGCCTTCTCCCTCA TCCAAACCCACACCTTTTTTTCCGTTGACATTCTTCACGGCAAGTGTCGC TATCGACGAGGTGGCCTTTTCGGGACTTGAACTACTACTCCCCCATCCCC CTTACCTCATTCACGCCTTTTCCCTCATTCAAACCCACACCTCTTCTTCC GTCGACATTCGTGACCCTGGCGTTCGATGTGCTCTTCCGCTTCTGTTCAT GCGCTACAAGCAGACGGCAAGATAGATCAGGAGGACGCCACGCTGGTGCG CATGGAGAGCGACCCTATGTACAGCTTCTGCCGAGATGCGGCTGCGTGGT TGGACTCGCCGATGTTCTTCAAGGTCTACCGGAACATGCAGGTGATTCGA CGCTGCTCAGAATGCTGATTTTGAGGGAGTCGGGGGGGGGGGGTTGCGCC ACCTAAGCACAGGATGCGCGATTTAGAGCTGTCAACGGTCCAACTTCAGT TTTCACCGTTTCGAATGAGTGCGGGGGATAGGGACCACGTTGTTTCCGCG ACGTTGGTTCCCCACCTGTTTGCTTTGCTTTGGTCAACCTTACGGTTCGG ATACCAAGTAGGTACCTCGTCGCCCGAGTGGTCTATTAATAGTAGGTAGC CTAGCACACGTGCTAGTACGGAAGTCGTGAGTTCGATTCTTGCCACACCA GGACTTTTGTTCTGGCGTCCGTAGCGGAAAGCTTACGAAGGTGAGCAAGT AAAAGTTCAACCATCGGTTGACGAGTTGTAAGAGTTCTAAACTTGCATCG CGATAATAATTCGTGAGGCGTGAACCAGGGAGAGCTGGGAAGATTCTTGG TGACCACAGGCAGGATGGCAACGTCGAGGCCCATCGGTCATAAGTGAGAT ACAAAGCAAAAATATCAACACCGGCATCAAAAACAGTTGCACGGCACAGC AGTACAGGACATCCTGGGCTTCTGATCTCTCTCGAGAACGTGTAAGAGCG CCCGAAGGAAGATCGCGGGATGTAACATCGAAGGGAAGGCTTCTTCCGCC GCGAAAAAGATTGGCGATGGGGATGTACGTCTGTGTTGTGGAAACCCTTT TGCACTTTTATTTTGGCCTGACTATGACACCACAGGCAAAGGAGAGGAGA TATGAGATGAGGGGTTAGGGTGCCTTTCCTTTCGGTGTATTGATATTTAA TAGTAGCGGAAACACGAGTTCGAGAAAATCGTCTCTTGGAGTTTAGACCA CTCACTTGTACCTGTAGTGGGAATAAAAATAGTTGGCGAAAATTTTTGAC TCCGTAGTTGTCGCGGGGGCGGGAGGGGGCAAATAAATATATTAGTTGGA AGATTTTGACGCGCAGTTATGTGGGGGCGGGGGGGGCGGGGTTGAAAATT TTGATAGGGTAAAGGCGTTTGTTGAAGCCTTCCGAGCATGTATTTGCTAC ACTACCCCCAAAATAACTGTTTATTCACATTTGATTTTTGACCGGGGGGT GATTTCATGGCTTGATAAAGTTTTGGCGAAATAATTTCATGACGCGCCCC ACGTAATTTTACGGCTGGATTGATCTATTGTATCGTAATTCCTAGATCTA AAGCGTCTTTTGTAATCCTTTTTTTCTTATTATTATTAAATCCCAGCGAA CGCTCAACTATTGGCTGAGTACAAAGTTGTTTTGGTGTTCAGGGGAAGTA GTTCATCGTATGTTCGGAGAAAAAAAATGAATGTATAGCGAACGGAAGAG GCTTAAAAACGTTCTGGTGGGCCCAGTTCCTCGTAAAAGAGCGACAACCT GCTTGTAGACACGGCGGTTGTGTACCGTACTGTATAGCTTACAGTATATA GTGTACTGTACAAGCCACACATTTCTGTCGTGGTGTGGGCGTCTTGACAA AACGTTTTCAGTCTACAGCCGTGGGATACATCGCGGTCATGGTCTTGTGG TGTTTGATATATAAATATTGTCCAGGAAGGCAACACGAGAGAGACCAATG TGTTTTTTTCTTGCAGTGCTGTCCCAAGGTAAGTTGCGTGGCGGCAAATA TCCACCTGCTCTCGAATATCTCCGTCAAGTACGGTGCTTCTCAGCATTTC GTCGTGTACGTACGTACGTATGCCTGTTTAAAAGACGAAACAAATATACG AGCCGAAGGGCCTTCCTTTTGCGAGGGATCCGGAAGAGGGATACCCAGGA ACATTGAGGGGGGGGGAAGGAGCTTGTCTTAAAACGGGCTAATCTGCCTT TAAACAAGACACGAGTTCTTCTCTCACAGAGTACCGCAAGAGCCCCGACA CGCTCCGACAGGAAAAAAAGCTGTGTGGTTAGTCGATCGTTTGGTCTCGT CGGAGTTACGAGCAAGTAATCAAGCAACTTGTTCTGACGTTAGACTCTTC TGAACCCCCCGCCCCTGTCCCCCTGGTGCCGCCGTACCCGGTTTTCCAAC GCCTACTCATCGTGGGAAACCGTTCAATCGTTTGGTTTCGCCTCTTTCGG CGTGCCTGACGCGGCGGACCCGAAGACCAAATGGTTGTCCTACGGCAGCG CCAAGAGACATCCCTGCATCGAGAAGAACCCCGAGCTGAGTTTATGGAAC GCAAACGGTGGGGCGGAGATCGAAGGGGTCGACTGCGTCGATCTGAAGGC AAAGGGGCGAGATGAAGAGATCTGGGAGGTGAGGCGGATAGCGTTTGGAA TTTATGCATAAGGCGGTGGTCCTCGTGAAGGGGGGCACAGCTCGAGGTGG GTGGTGACGGGACACCTTTTTTTTATGTCATAGTCTGGCGGACGTTTCTG TCCTTCGTTCGGTTCTCCCTCTGTCCTTCGTTTGCTGGTCGCTTCACTAT TCTAAAGAGTTCTTAGGGTTGTTTTTTGTCGACGGCTTTTACGGGCGAGA GACCCTTTATGTAACAAATCGTGCAGAGCTTTGGGCGACCTCGGTCGGCT GCAGCGAAAAAGGGAAACCTCGACCCAGTCTCGCGCCGCTTCTCGATTCG CTCGTCGCTCGGCATGCGCCTAGGCAAAACATACGTCGAAAGGAGGGAGG CTGCAGGCCAAGAGATGGGGGGGGGGGGGGGGGAGAAGGAGCCTGTTACC GCCGTCGTGGTCGTGAAAGGGCGAATAGTTTCTGAATTTTCCGTTGACTT GTGGCGGCGGCCCCCGCGCCTCCTCTTCCCCAAACGCGAAACCTCCAGTT CCGAGCGCTGCAGGCTTGTCGATACCACACCCTGTCCCTCTCTCGCCACT CCTCTGTAACCCCATTCAGGAATACTTCAGTCGCACCGCGGATGCGGCGA TCAAACGTCTGGAGCGGGGGATGTGGGTTGGCGTCACCGAGCGCATGGAA GAAGCCGTGTGCCTGCTGCTGTTCACCTTGGGCAAGGCCTGGTATCCCTT GGGGAATTTGCGACACAAGGAGCCGAGGCCGATAAGCGTGAGCGATCGAT GCCCGGGGAAAAGCGAGGTGGTTTGAGTGTTTTTTTGCGATGCGTTGGCG CGGGTTTCCCGTGGTTCTTAAGGCAAAGGCCACAGAGCAACGCGGTGGAG TTTGTTATCTCTTGGGAGATCGCTTTGCAAGAGCCAGTCGTTCGAACGAG GGGATCACGACGAAGAAACCCACACGGTGGGGCAGGGTCGGTCCGACGGA TGGATCTTTTGATCGATTATATTTGAGAAACGGTCGATGTCCCCGTGAAG CAAGCATTTGCCACCAGTTATGTTTCTGCGATATTCGTCCGCCTCCCACC CGAACCTGCACCATCTTCCCCTACTCCCCTCATTTCCTCTGCATGCGTGG TGACTATGGTGACTGGTGGTTTCTGCAGGTATGGAGCGAAGCCGCGATCG CTAAGGTGGACCGAACCGATCGAGCAGACTGGAGGCTGTTCGACGCCGCC AACGAGATCCTTGACCTTCGGTTGTGGACCGTGAGCGTCGTGTACCTCTT TCTGGCTTAATTTGGCTTGCCTCACCTCGTCTTACCTGGCCTTCCCTTAA ATCAAATCAAATCAAATTATGTCAAACAAATCAAACCAAATGAAATCAAA TGAAATCAAACGAAATCAAATGAAATCAAATGAAATCAAATGAAATCATG TCACATCAAACAATTGAAAATAAATAAATAAAAATAAAAATAAATAAACA CTCTTTAATAGCGCTCTTTAGTTGTGGTCGCCTTGCCTTCGATTAAAACA TTAGTCTAGTGCATTAATACCTGTTCCTTTCTTCACCTTGTGCGGTTCAC TGGCCAACAAACTCTTTAACCCTGTTGGTACCTATGCCGCTGTACACACA CTATCAGCCCTTGAAACGGCTCCTGTTGGCGGTTGTCTCTCGGTGAGGTA TATAGAGCAATATTTTTGGGTATGTATGATGTTATGCGTTCGTGTCTGCG TTTCTTTTTATTTCGTCGCGAGCTGAGGGCGGGGCGCTCTTTCTCATCAC ATTCCTTTGACCGTTACTCCCCCCCCCCCTCCCTTCCCACGGCGCCTGTT TTCCGATGCAGGCTCGGGAGCGATTAGAGCACACCGACCAAGAAGAGCGC GAGCGATTGGGTCAGTGTTTCGATGTCCTCGCAGGCGCGTGAAATCAAGG GCGACACGATCTCGGCTGCAGTTTTGTCGAAGCGCAACCCCCCCCCTCCC CATAATACAGTATTGTAGTATTGTGGATGCCTTGCAGGCGGGTGTGGGGG GGCGGGACGATGATTTACTGGACAGAGAGCGAGGACGTTCGAGACTGTGA AATGACGAATGTTTCATATTTCAGGGAAGATTCAATGACCTAGACATGCT GCGCTGGCCAGAAGACACGTAGTATACATTTGCTGCTTTGTCGGCTGGGT GCGATGGCCGCTGGTGTGAAAGTCTGAAGTTTAATTGTACCAACAGCTCT GGGACTCGAAAAGCCCAAAGTTTCCACTCACTGCTCTTGGGCCGTTTTTT TCGTCCCCCTCATGCTTGCGGATTTTTTTTTTGTACTGGTAAGACACTAG ACCCAAGCAAAACCGCAGAGTCGAGGCGGCCTCCTCGGTCGCAAGCCATT CGTAGGTCACGCGTAAGACTCATCTTTGGTGGGCAGAGTTAGAGCATCTT GAGCTTGCAAACGGCACCTCCAAAAATGTCGATAGCGATAATAGGGCCCT GGGGGAATATGGATATCCTGCTGATGGAACGCGTTCGCTGGGGGCCCATG TGCCTGTTCAAGAGGCGTGCGTTGTCGCCCCACTCCCCCCGCCTTGGCGA TTCCCCTTAGATCCTAGGCGATCCTCACGAGAGCCCGACACGTTTTCAAG TAGACATTCCATCCGAGTGCTATTATGCTTTCTCGAGGGTAACGGGCAAG GCTTGTATTTATAGCTCCAAAGTAGTAGTATTTCGATTCTCTTTTTCCTC TCGGTATTTCATGCCTTCTGTGCAAAAAAAAACTGCGATGGGCCTGTGTA TCTCTCGAATTTGTCTCGTGGCGTGGAGTGATTTAGCTTAGCTCCTGTTC CACGGTCACCAAGTATTAGGTAGACGTGTTTGGGCGTTTCGGGAAATTCC TGTGCTGAGAAGAGGAACCTTCGGTAGGGGGGCTTGTGATGGACTTGCAC AAGGCGTCAACCGCGACCAGACAGCATTTTTTTACCGCGGTCTCCAATCT GCTTTTCGGTTGTGATGCTCACTCGGTCGATAGATCGCCACAGACGTTTC TCGATGACCCACCCACCCTTCGTACTTGGAGGAGGGATCGTTCAGTCTAC GGATTAACGTGAAAGATACAGTATATATGCCTGGGACACATGAAGGAGAG TCGCCTGCTTAAAATGAAAAAAGTGCCTCTGACTGCGACGCTCGATGTAA TAGAGTTCAGGATACAGAAGAACTGAGAACGTGACTGTTATTGACGCAAC CCCACGAAAAATCCAAGGATATCCATCCCCCGACGACTCTCTCGACAAGG ACTTCAGGCGACGCAATCAAACCGTAATTTCTAG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig109:603318..612101-

>mRNA_A-nodosum_M_contig109.7.4 ID=mRNA_A-nodosum_M_contig109.7.4|Name=mRNA_A-nodosum_M_contig109.7.4|organism=Ascophyllum nodosum dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at A-nodosum_M_contig109:603318..612101- (Ascophyllum nodosum dioecious)
ATGTTACTTGGCAAGATCTTTCCGAGCGAATCCATTCTGCCAACGTCTCA
CCCGTCCATGGGGCTTCGCTTGGCCGGCTTGACGGGACACGACGAGAAGT
GGTGGGAGCCGATCAAGGTGATGTACTCCCACAACAGACCCAACGTTACA
GACGCCATCGGGCTCCCGCCCACGAAGCAACCGCGGCTGCTGTACGTAAT
CCGGAATCCCGTTCTGCACAAGGCCTCCATCTACTTTGAGTCCGTCTGCA
GATTCGGGCGACACATAAAGGCAGACGGCAAGATAGATCAGGAGGACGCC
ACGCTGGTGCGCATGGAGAGCGACCCTATGTACAGCTTCTGCCGAGATGC
GGCTGCGTGGTTGGACTCGCCGATGTTCTTCAAGGTCTACCGGAACATGC
AGACCAAATGGTTGTCCTACGGCAGCGCCAAGAGACATCCCTGCATCGAG
AAGAACCCCGAGCTGAGTTTATGGAACGCAAACGGTGGGGCGGAGATCGA
AGGGGTCGACTGCGTCGATCTGAAGGCAAAGGGGCGAGATGAAGAGATCT
GGGAGGAATACTTCAGTCGCACCGCGGATGCGGCGATCAAACGTCTGGAG
CGGGGGATGTGGGTTGGCGTCACCGAGCGCATGGAAGAAGCCGTGTGCCT
GCTGCTGTTCACCTTGGGCAAGGCCTGGTATCCCTTGGGGAATTTGCGAC
ACAAGGAGCCGAGGCCGATAAGCGTATGGAGCGAAGCCGCGATCGCTAAG
GTGGACCGAACCGATCGAGCAGACTGGAGGCTGTTCGACGCCGCCAACGA
GATCCTTGACCTTCGGTTGTGGACCGCTCGGGAGCGATTAGAGCACACCG
ACCAAGAAGAGCGCGAGCGATTGGGTCAGTGTTTCGATGTCCTCGCAGGC
GCGTGA
back to top