mRNA_A-nodosum_M_contig1087.25.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE) HSP 1 Score: 140 bits (353), Expect = 5.720e-32 Identity = 80/193 (41.45%), Postives = 113/193 (58.55%), Query Frame = 2
Query: 764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFD----------------IMGD------W-QATGLKAEV-WVETVTEGGRRFMAAWRKEAVDAARYRQEKR 1270
+LQAEA+EALLYGC TW+ HY LR++H R+LLR+IG +RK+ +R Y + L+ CQS+E T+ RRLL+AGA R GRLPKR++ G+L G +R RGG+E+ W CV D++AF + D W +A ++ EV W V +G RFM +W ++ +A+R R KR
Sbjct: 151 LLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTNTDPCCLGIPVPNDTAPKLKWTEAAKVEGEVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 343
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE) HSP 1 Score: 136 bits (343), Expect = 6.970e-32 Identity = 78/186 (41.94%), Postives = 106/186 (56.99%), Query Frame = 2
Query: 764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDIM-----GDWQATGLKAEVWVET------------VTEGGRRFMAAWRKEAVDAARYRQEKR 1270
+LQAEA+EALLYGC TW+ R+ HY L+T H R+LLR+IG +RKR +R Y + L+ CQS+E T+ RRLL+AGA R GRLPKR++ G+L G G+G E+ W C++ D++ F+ G+ VW E V +G RFMA+W K +A R R KR
Sbjct: 125 LLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEANRQRAIKR 310
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 140 bits (353), Expect = 1.430e-31 Identity = 80/186 (43.01%), Postives = 109/186 (58.60%), Query Frame = 2
Query: 764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDIMG---------------DW-QATGLKAEV-WVETVTEGGRRFMAAWRKEAVDAARYRQEKR 1270
+LQAEA+EALLYGC TW+ R+ HY L+T H R+LLR+IG +RKR +R Y + L+ CQS+E T+ RRLL+AGA R GRLPKR++ G+L G GRG E+ W C++ D++ F+ DW +A ++ V W V +G RFMA+W K A+R R KR
Sbjct: 408 LLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 593
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 140 bits (354), Expect = 3.240e-31 Identity = 81/186 (43.55%), Postives = 110/186 (59.14%), Query Frame = 2
Query: 764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDIM----GDWQAT-GLKAEVWVET------------VTEGGRRFMAAWRKEAVDAARYRQEKR 1270
+LQAEA+EALLYGC TW+ R+ HY L+T H R+LLR+IG +RKR +R Y + L+ CQS+E T+ RRLL+AGA R GRLPKR++ G+L G GRG E+ W C++ D++ F+ D Q+ G+ VW E V +G RFMA+W K +A+R R KR
Sbjct: 905 LLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGSTTDKQSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 1090
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE) HSP 1 Score: 129 bits (323), Expect = 7.570e-31 Identity = 71/182 (39.01%), Postives = 97/182 (53.30%), Query Frame = 2
Query: 764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRK-RPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFD-----------IMGD----WQATGLKAEVWVETVTEGGRRFMAAWRKEAVDAARYRQ 1261
+L+AE IE LLYGC TWTL +H+AKLR+ H +LLR+IG QR+ R DH Y + L ITRC+SIETT+ RRL +AGA +R GRLP R++ G + G GG+ K W + D+R F + G W + W + E +FM W + +R R+
Sbjct: 1 MLKAEVIETLLYGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRTDHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKATEGSTEDSPLVFGVGTALWPTAAKQTGKWYRGILEAAEQFMGRWHEAEAKLSRQRR 182
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE) HSP 1 Score: 137 bits (346), Expect = 2.260e-30 Identity = 78/186 (41.94%), Postives = 107/186 (57.53%), Query Frame = 2
Query: 764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDIM-----GDWQATGLKAEVWVET------------VTEGGRRFMAAWRKEAVDAARYRQEKR 1270
+LQAEA+EALLYGC TW+ R+ HY L+T H R+LLR+IG +RKR +R Y + L+ CQS+E T+ RRLL+AGA R GRLPKR++ G+L G G+G E+ W C++ D++ F+ G+ VW E V +G RFMA+W K +A+R R KR
Sbjct: 576 LLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 761
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE) HSP 1 Score: 137 bits (346), Expect = 2.750e-30 Identity = 78/186 (41.94%), Postives = 111/186 (59.68%), Query Frame = 2
Query: 764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDIM-GDWQAT----GLKAEVWVET------------VTEGGRRFMAAWRKEAVDAARYRQEKR 1270
+LQAEA+EALLYGC TW RQ+ Y LRT+H R+LLR++G QR + +R Y + L+ CQS+E+T+ RRLL+AGA R GRLPKR++ G+L G GRG E+ W C++ D++ F+ G A G+ WVE V +G +R +A+W K+ +A+R R+ KR
Sbjct: 692 LLQAEAMEALLYGCMTWAPRQDQYRTLRTIHHRLLLRVVGYQRMKCTYRQLSYAQTLKRVGCQSVESTIRQRRLLFAGALARQPDGRLPKRLMLGELVGGEGSGRGKPEQNWQMCLKDDLKMFEAEHGSTDAEPCFFGVLETTWVEKAKVDRGVSWHTGVLQGAQRCLASWHKKEQEASRQRELKR 877
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE) HSP 1 Score: 138 bits (347), Expect = 2.960e-30 Identity = 79/190 (41.58%), Postives = 109/190 (57.37%), Query Frame = 2
Query: 764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDIM-----GDWQATGLKAEVWVET------------VTEGGRRFMAAWRKEAVDAARYRQEKREATR 1282
+LQAEA+EALLYGC TW+ R+ HY L+T H R+LLR+IG +RKR +R Y + L+ CQS+E T+ RRLL+AGA R GRLPKR++ G+L G G+G E+ W C++ D++ F+ G+ VW E V +G RFMA+W K +A+R R KR +R
Sbjct: 1396 LLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKRGDSR 1585
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5KX41_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX41_9PHAE) HSP 1 Score: 137 bits (346), Expect = 3.140e-30 Identity = 78/186 (41.94%), Postives = 107/186 (57.53%), Query Frame = 2
Query: 764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDIM-----GDWQATGLKAEVWVET------------VTEGGRRFMAAWRKEAVDAARYRQEKR 1270
+LQAEA+EALLYGC TW+ R+ HY L+T H R+LLR+IG +RKR +R Y + L+ CQS+E T+ RRLL+AGA R GRLPKR++ G+L G G+G E+ W C++ D++ F+ G+ VW E V +G RFMA+W K +A+R R KR
Sbjct: 849 LLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 1034
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 137 bits (344), Expect = 3.290e-30 Identity = 79/193 (40.93%), Postives = 111/193 (57.51%), Query Frame = 2
Query: 764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDI-----------MG-----------DW-QATGLKAEV-WVETVTEGGRRFMAAWRKEAVDAARYRQEKR 1270
+LQAEA+EALLYGC TW+ HY LR++H R+LLR+IG +RK+ +R Y + L+ CQS+E T+ RRLL+AGA R GRLPKR++ G+L G +R RGG+E+ W CV D+ AF +G W +A ++ V W V +G RFM +W ++ +A+R R KR
Sbjct: 479 LLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 671 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1087.25.1 >prot_A-nodosum_M_contig1087.25.1 ID=prot_A-nodosum_M_contig1087.25.1|Name=mRNA_A-nodosum_M_contig1087.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=135bp MTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGback to top mRNA from alignment at A-nodosum_M_contig1087:212497..214310+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1087.25.1 ID=mRNA_A-nodosum_M_contig1087.25.1|Name=mRNA_A-nodosum_M_contig1087.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1814bp|location=Sequence derived from alignment at A-nodosum_M_contig1087:212497..214310+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1087:212497..214310+ >mRNA_A-nodosum_M_contig1087.25.1 ID=mRNA_A-nodosum_M_contig1087.25.1|Name=mRNA_A-nodosum_M_contig1087.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=405bp|location=Sequence derived from alignment at A-nodosum_M_contig1087:212497..214310+ (Ascophyllum nodosum dioecious)back to top |