mRNA_A-nodosum_M_contig1087.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1087.25.1
Unique NamemRNA_A-nodosum_M_contig1087.25.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 5.720e-32
Identity = 80/193 (41.45%), Postives = 113/193 (58.55%), Query Frame = 2
Query:  764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFD----------------IMGD------W-QATGLKAEV-WVETVTEGGRRFMAAWRKEAVDAARYRQEKR 1270
            +LQAEA+EALLYGC TW+    HY  LR++H R+LLR+IG +RK+  +R   Y + L+   CQS+E T+  RRLL+AGA  R   GRLPKR++ G+L G  +R RGG+E+ W  CV  D++AF                 +  D      W +A  ++ EV W   V +G  RFM +W ++  +A+R R  KR
Sbjct:  151 LLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTNTDPCCLGIPVPNDTAPKLKWTEAAKVEGEVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 343          
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 6.970e-32
Identity = 78/186 (41.94%), Postives = 106/186 (56.99%), Query Frame = 2
Query:  764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDIM-----GDWQATGLKAEVWVET------------VTEGGRRFMAAWRKEAVDAARYRQEKR 1270
            +LQAEA+EALLYGC TW+ R+ HY  L+T H R+LLR+IG +RKR  +R   Y + L+   CQS+E T+  RRLL+AGA  R   GRLPKR++ G+L G    G+G  E+ W  C++ D++ F+             G+   VW E             V +G  RFMA+W K   +A R R  KR
Sbjct:  125 LLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEANRQRAIKR 310          
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.430e-31
Identity = 80/186 (43.01%), Postives = 109/186 (58.60%), Query Frame = 2
Query:  764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDIMG---------------DW-QATGLKAEV-WVETVTEGGRRFMAAWRKEAVDAARYRQEKR 1270
            +LQAEA+EALLYGC TW+ R+ HY  L+T H R+LLR+IG +RKR  +R   Y + L+   CQS+E T+  RRLL+AGA  R   GRLPKR++ G+L G    GRG  E+ W  C++ D++ F+                  DW +A  ++  V W   V +G  RFMA+W K    A+R R  KR
Sbjct:  408 LLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASRQRAIKR 593          
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 3.240e-31
Identity = 81/186 (43.55%), Postives = 110/186 (59.14%), Query Frame = 2
Query:  764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDIM----GDWQAT-GLKAEVWVET------------VTEGGRRFMAAWRKEAVDAARYRQEKR 1270
            +LQAEA+EALLYGC TW+ R+ HY  L+T H R+LLR+IG +RKR  +R   Y + L+   CQS+E T+  RRLL+AGA  R   GRLPKR++ G+L G    GRG  E+ W  C++ D++ F+       D Q+  G+   VW E             V +G  RFMA+W K   +A+R R  KR
Sbjct:  905 LLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGSTTDKQSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 1090          
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 129 bits (323), Expect = 7.570e-31
Identity = 71/182 (39.01%), Postives = 97/182 (53.30%), Query Frame = 2
Query:  764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRK-RPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFD-----------IMGD----WQATGLKAEVWVETVTEGGRRFMAAWRKEAVDAARYRQ 1261
            +L+AE IE LLYGC TWTL  +H+AKLR+ H  +LLR+IG QR+ R DH    Y + L ITRC+SIETT+  RRL +AGA +R   GRLP R++ G + G      GG+ K W   +  D+R F            + G     W     +   W   + E   +FM  W +     +R R+
Sbjct:    1 MLKAEVIETLLYGCVTWTLNADHFAKLRSAHHEVLLRVIGFQRRLRTDHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKATEGSTEDSPLVFGVGTALWPTAAKQTGKWYRGILEAAEQFMGRWHEAEAKLSRQRR 182          
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.260e-30
Identity = 78/186 (41.94%), Postives = 107/186 (57.53%), Query Frame = 2
Query:  764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDIM-----GDWQATGLKAEVWVET------------VTEGGRRFMAAWRKEAVDAARYRQEKR 1270
            +LQAEA+EALLYGC TW+ R+ HY  L+T H R+LLR+IG +RKR  +R   Y + L+   CQS+E T+  RRLL+AGA  R   GRLPKR++ G+L G    G+G  E+ W  C++ D++ F+             G+   VW E             V +G  RFMA+W K   +A+R R  KR
Sbjct:  576 LLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 761          
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.750e-30
Identity = 78/186 (41.94%), Postives = 111/186 (59.68%), Query Frame = 2
Query:  764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDIM-GDWQAT----GLKAEVWVET------------VTEGGRRFMAAWRKEAVDAARYRQEKR 1270
            +LQAEA+EALLYGC TW  RQ+ Y  LRT+H R+LLR++G QR +  +R   Y + L+   CQS+E+T+  RRLL+AGA  R   GRLPKR++ G+L G    GRG  E+ W  C++ D++ F+   G   A     G+    WVE             V +G +R +A+W K+  +A+R R+ KR
Sbjct:  692 LLQAEAMEALLYGCMTWAPRQDQYRTLRTIHHRLLLRVVGYQRMKCTYRQLSYAQTLKRVGCQSVESTIRQRRLLFAGALARQPDGRLPKRLMLGELVGGEGSGRGKPEQNWQMCLKDDLKMFEAEHGSTDAEPCFFGVLETTWVEKAKVDRGVSWHTGVLQGAQRCLASWHKKEQEASRQRELKR 877          
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 2.960e-30
Identity = 79/190 (41.58%), Postives = 109/190 (57.37%), Query Frame = 2
Query:  764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDIM-----GDWQATGLKAEVWVET------------VTEGGRRFMAAWRKEAVDAARYRQEKREATR 1282
            +LQAEA+EALLYGC TW+ R+ HY  L+T H R+LLR+IG +RKR  +R   Y + L+   CQS+E T+  RRLL+AGA  R   GRLPKR++ G+L G    G+G  E+ W  C++ D++ F+             G+   VW E             V +G  RFMA+W K   +A+R R  KR  +R
Sbjct: 1396 LLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKRGDSR 1585          
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5KX41_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX41_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 3.140e-30
Identity = 78/186 (41.94%), Postives = 107/186 (57.53%), Query Frame = 2
Query:  764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDIM-----GDWQATGLKAEVWVET------------VTEGGRRFMAAWRKEAVDAARYRQEKR 1270
            +LQAEA+EALLYGC TW+ R+ HY  L+T H R+LLR+IG +RKR  +R   Y + L+   CQS+E T+  RRLL+AGA  R   GRLPKR++ G+L G    G+G  E+ W  C++ D++ F+             G+   VW E             V +G  RFMA+W K   +A+R R  KR
Sbjct:  849 LLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASRQRAIKR 1034          
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.290e-30
Identity = 79/193 (40.93%), Postives = 111/193 (57.51%), Query Frame = 2
Query:  764 VLQAEAIEALLYGCSTWTLRQEHYAKLRTVHDRILLRIIGAQRKRPDHRMTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEGAVRRGRGGKEKEWTDCVQSDIRAFDI-----------MG-----------DW-QATGLKAEV-WVETVTEGGRRFMAAWRKEAVDAARYRQEKR 1270
            +LQAEA+EALLYGC TW+    HY  LR++H R+LLR+IG +RK+  +R   Y + L+   CQS+E T+  RRLL+AGA  R   GRLPKR++ G+L G  +R RGG+E+ W  CV  D+ AF             +G            W +A  ++  V W   V +G  RFM +W ++  +A+R R  KR
Sbjct:  479 LLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 671          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1087.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1X4_9PHAE5.720e-3241.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE6.970e-3241.94Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE1.430e-3143.01Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE3.240e-3143.55Reverse transcriptase domain-containing protein n=... [more]
UPI001AA1A1FE7.570e-3139.01hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5JEX7_9PHAE2.260e-3041.94Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KN66_9PHAE2.750e-3041.94Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM6_9PHAE2.960e-3041.58Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KX41_9PHAE3.140e-3041.94Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS82_9PHAE3.290e-3040.93Reverse transcriptase domain-containing protein (F... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1087contigA-nodosum_M_contig1087:212497..214310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7897.ENSLACP00000000641
Model size1814
Max annot lvl7897.ENSLACP00000000641|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.44e-08
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size405
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866473.5270796-UTR-A-nodosum_M_contig1087:212496..2134061680866473.5270796-UTR-A-nodosum_M_contig1087:212496..213406Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1087 212497..213406 +
1680866473.6093605-UTR-A-nodosum_M_contig1087:213811..2143101680866473.6093605-UTR-A-nodosum_M_contig1087:213811..214310Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1087 213812..214310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866473.5432746-CDS-A-nodosum_M_contig1087:213406..2138111680866473.5432746-CDS-A-nodosum_M_contig1087:213406..213811Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1087 213407..213811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1087.25.1prot_A-nodosum_M_contig1087.25.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1087 213407..213811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1087.25.1

>prot_A-nodosum_M_contig1087.25.1 ID=prot_A-nodosum_M_contig1087.25.1|Name=mRNA_A-nodosum_M_contig1087.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=135bp
MTLYNRILEITRCQSIETTLSTRRLLWAGARIRMSGGRLPKRIVSGKLEG
AVRRGRGGKEKEWTDCVQSDIRAFDIMGDWQATGLKAEVWVETVTEGGRR
FMAAWRKEAVDAARYRQEKREATRLGKLFSHTER*
back to top

mRNA from alignment at A-nodosum_M_contig1087:212497..214310+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1087.25.1 ID=mRNA_A-nodosum_M_contig1087.25.1|Name=mRNA_A-nodosum_M_contig1087.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1814bp|location=Sequence derived from alignment at A-nodosum_M_contig1087:212497..214310+ (Ascophyllum nodosum dioecious)
CAGGTAGCAGCACGGCAACTTGAGAGTTGACCATCATACATAAAGGGACC GTCTCCACCGTAGGTGAGTCTCTGTTTTTCGCGAAGAACGGTAGGTTACA ACAACACAACAGTCGTCCTTCAGGCTTAAACCAAATACACGTGTCGTACT GGACTGTCTGCACAGGCCAGTATGGTCATTGTATTACAGGTAGTATAGTA CAATTTACTGTAGTACCTCAGTACGGTCTTCTGTCTGTACTTGGAGTCAT CTCGAAAAGTGCAGTTTGTCACCCTCGACGCCACTTTTAAGATGAGAGAC CGGTGGACAAGGTTTCGTGCACAATATGACTCACGGTAGTTCGATGCCTC GGTTGATGCTGTAGTTCTTGGAATGCTCTCGCTAAAACCTTCTTTTTATT AGATCGCTTGCCGGGAATCAGAGGAGAAAAAGTACTGAAACTGGGGTGGT CTTTGTTCGATAAAACACAACCCAGAACATGTACAAAATAATCCAAAAAC GGAGATAGGCCCTATTCTACCCCTAGGTCGTCTCCTAATGCGGAGGGATT ACAGACCAATCATCATAACACATATACACTTTGTAGAGTCCGATTTCGCG TACTTGGACTGATTTTTCTTAACACATTCAAGCATCATTTGGAACGAAGT AGGATACCATCTAAGTGGTTCTGACCAAAATATAGGTGATCGATTGATTG TTTTGTCGTGCGCTTCAAGAAGTTTGCTTTTGAAAGCAGGAATTGCGTTC AGATTTTTCTTGAGTTTTGCAGGCCGAGGCAATCGAGGCCCTCCTGTATG GATGCAGTACGTGGACCCTCCGCCAGGAACACTACGCCAAACTCCGCACC GTACACGACAGGATCTTGCTTCGCATCATCGGGGCACAGCGCAAGAGACC AGACCATCGGATGACTTTGTACAACCGTATCCTTGAGATCACCCGGTGCC AGAGCATTGAGACAACGTTGTCCACGAGAAGACTTTTGTGGGCGGGGGCG CGCATCCGGATGAGCGGCGGGCGGCTGCCAAAGCGAATCGTGTCCGGAAA GCTTGAGGGTGCAGTACGGAGAGGACGGGGTGGGAAAGAGAAAGAGTGGA CCGATTGCGTACAGAGCGACATCCGGGCGTTTGACATAATGGGGGATTGG CAAGCGACGGGGTTAAAGGCTGAGGTGTGGGTTGAGACGGTCACGGAGGG TGGGCGGAGGTTCATGGCCGCGTGGAGGAAAGAAGCGGTAGACGCGGCTA GATATCGCCAAGAGAAGAGAGAGGCAACGAGACTGGGAAAGTTGTTCTCG CACACGGAAAGGTAGAATTTTGCGAAGCGACACCCATTGGCCTAGCCGAC GAGTTGAAGGAATTCTTGTACGGACGCAAGACGGACCGAGACCTGCGTAG CGCCTAAGGCATGTAGACGCGTCACGTGATTTTTATTTTTATTTTCCCGA ACGAGCAGCTTGGGTGTGGGAGGGGGTGCGCTTCCAGACTTTTTCTATTA TTATTTTTTCCCTGTTCAGCAGACCACGAGCGGGATTGGCCACCGTGTAA AGTATTTTTTGGGGTTAGCGACCAATACGCTGAATGTGAGAAGTGTAGGA TTTCATTTGGGAATCCATGGTTTGTGGAGGCGGTATAGAATTCGGAAAAC GGGGACGATAAGCTAGGGGGTCCGCAGGGCGAGTCTCTAGTCAGGTTGGC CGTGGAAGCGGTCTCTGAATCGAGTGGAGTGGGCCAGCTCAAGAAGCAGC ATTGGCAGTATTAGCCGTACGTCATAGGAGAGAACCATCGCCTTGGACTT GATCAAATTTGGGA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1087:212497..214310+

>mRNA_A-nodosum_M_contig1087.25.1 ID=mRNA_A-nodosum_M_contig1087.25.1|Name=mRNA_A-nodosum_M_contig1087.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=405bp|location=Sequence derived from alignment at A-nodosum_M_contig1087:212497..214310+ (Ascophyllum nodosum dioecious)
ATGACTTTGTACAACCGTATCCTTGAGATCACCCGGTGCCAGAGCATTGA
GACAACGTTGTCCACGAGAAGACTTTTGTGGGCGGGGGCGCGCATCCGGA
TGAGCGGCGGGCGGCTGCCAAAGCGAATCGTGTCCGGAAAGCTTGAGGGT
GCAGTACGGAGAGGACGGGGTGGGAAAGAGAAAGAGTGGACCGATTGCGT
ACAGAGCGACATCCGGGCGTTTGACATAATGGGGGATTGGCAAGCGACGG
GGTTAAAGGCTGAGGTGTGGGTTGAGACGGTCACGGAGGGTGGGCGGAGG
TTCATGGCCGCGTGGAGGAAAGAAGCGGTAGACGCGGCTAGATATCGCCA
AGAGAAGAGAGAGGCAACGAGACTGGGAAAGTTGTTCTCGCACACGGAAA
GGTAG
back to top