mRNA_A-nodosum_M_contig1086.3.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 237 bits (604), Expect = 1.410e-71 Identity = 118/216 (54.63%), Postives = 154/216 (71.30%), Query Frame = 1
Query: 1 VSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHIL-TEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHESLDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE 645
V++TTDGWTSR NESY+S TV Y++ +WK+ L+L C+K T GEDLAA + MVE H LTG V+ TDCEPSM+KAG +L + + + H+GC+ HR+E TS VF+G + ++ AR +V RY KSSQ A RL +LCGI+ PL V+QDVETRWW T +M RL+YL +A++LHES+D+V PLL DW VL L+EP+L PFM QK LE
Sbjct: 41 VAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLE 255
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 236 bits (601), Expect = 2.570e-71 Identity = 121/228 (53.07%), Postives = 162/228 (71.05%), Query Frame = 1
Query: 1 VSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHIL-TEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHESLDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTETLVVP 678
V++TTDGWTSR+NESY+S TV Y++ W++ L+L+C+K T GEDLA I +M+E H LTG V TDCEPSMVKAG +L + L H+GC+ HR+E TS VF+G + ++A+ARAVV RY +SSQ +GRL GI+ PL V+QDVETRWW + +M ERL+YL +A++LHES D++AP+L DW VL L+EP+L PFM QK LE + VT ++ VP
Sbjct: 77 VAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVP 303
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 216 bits (551), Expect = 1.820e-64 Identity = 107/227 (47.14%), Postives = 151/227 (66.52%), Query Frame = 1
Query: 1 VSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHESLDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTETLVVP 678
V++T+DGWTS +N++Y+ FT Y++ ++ +V L + C K T GEDL +++AM+ + LT V TDCEPSMVKAG +L E + H+GC CHR+E +TS F GPGV K++A AR VV+RY SSQA+ RL ++ IV +V+QDVETRWW T + RL+ LRR + HE +D + PLL DW VL+++EP+ PF+ QK E S +VT +LV+P
Sbjct: 50 VAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIP 276
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 219 bits (559), Expect = 1.090e-62 Identity = 113/227 (49.78%), Postives = 148/227 (65.20%), Query Frame = 1
Query: 1 VSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHESLDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTETLVVP 678
V++T+DGWT +N++Y+SFT Y++ ++ +V L L C K T GEDL +++AM+ + LTG V TDCE SMVKAG +L E + H+GC CHR+E +TS F GPGV K++A AR VV+RYT SSQA+ RL ++C IV V+QDVETRWW T RL+ LRR + HE +D PLL DW VL+L+E +L PFM QK LE S VT LV P
Sbjct: 6 VALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSP 232
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 188 bits (477), Expect = 1.750e-54 Identity = 98/216 (45.37%), Postives = 131/216 (60.65%), Query Frame = 1
Query: 28 SRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHESLDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTETLV 672
S +N++Y++FT Y++ ++ +V L L K T GEDL +++AM+ + LTG V TDCEP MVKAG +L E + H+GC CHR E +TS F GPGV K++A R VV+RYT SSQA+ RL ++C IV +V+QDVETRWW T +D + PLL DW VL+L+EP+L PFM QK LE S VT +LV
Sbjct: 3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWSTP----------------REIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLV 202
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 149 bits (377), Expect = 7.200e-38 Identity = 90/199 (45.23%), Postives = 122/199 (61.31%), Query Frame = 1
Query: 1 VSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKA-VLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGI-VGTIPLRVIQDVETRWW*TQSMAERLVY-LRRAVELHESLDDVAPLLGPVDWNV 588
V +T+DGWTS AN++Y+S T + WK+VTL++ CSK + T G+ LAA I+A V H LTG V TDCEPSMVK G +L A V +GC +R+E +S+VF+GP VKK M AR +V+RY SSQAA RL++ +G RVIQDV T S+ +Y LR ++E +++DD+ L D NV
Sbjct: 41 VCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVTG-----SLVVPFIYDLRNSLE--DAIDDLVELPPDSDANV 232
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: A0A224XKI7_9HEMI (Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XKI7_9HEMI) HSP 1 Score: 102 bits (255), Expect = 1.430e-21 Identity = 63/227 (27.75%), Postives = 114/227 (50.22%), Query Frame = 1
Query: 7 MTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHESL-DDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLESNNV-TETLVVPL 681
+TTD WTS E+YI T ++++++K+ +L L CSK + K ED+A +++ + + + +++ +D +M KA L E H GC H I + ++ + + + +V + +S A +L PL++IQ+V+TRW T M ER V L A++ ++ D P L +W +L+ + +L P+ V K + + T +V+PL
Sbjct: 185 ITTDSWTSNNTENYIGVTAHFLDENFKLHSLLLECSKTDASHKAEDIAGTLKRITQYWGIDQKIILAVSDNASNMQKAIQQLLE---WKHFGCFAHTINLIVKDALKCKDIQAIVEKVKRIVEYFRRSCTATEKLSRYQATSRNTPLKLIQEVQTRWNSTYYMLERFVSLEEAIKSTMAIIDKDLPKLNFEEWKILKEMCQILKPYENVTKAISGDKYCTAAIVIPL 408
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: UPI00084F0F5D (zinc finger BED domain-containing protein 1-like n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=UPI00084F0F5D) HSP 1 Score: 97.1 bits (240), Expect = 1.450e-19 Identity = 62/227 (27.31%), Postives = 115/227 (50.66%), Query Frame = 1
Query: 7 MTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHES-LDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLESNNV-TETLVVPL 681
+TTD WTSR ESYI+ TV ++ND+++++++ L CS + + ++LA I +V + +++ +D ++ A ++++ H C H + + + G+ + + + + +V + +S + +L G PL++IQDV TRW T M ER L A+ + LD P+L +W ++ L VL PF V K + + +L++PL
Sbjct: 213 LTTDCWTSRNTESYIAVTVHFINDNFELISVLLECSTMSTNHTSKNLAHEIRRIVHEWGIEKKILLAVSDSANNIKSA---ISKELGWKHFSCFAHTLNLIVNDALHTDGITEILEKIKIIVGHFKRSYISNEKLMLFQKNNGDQPLKLIQDVPTRWNSTYFMLERFSKLETAIRSTLAVLDKDLPILTVEEWKIINELCQVLKPFEAVTKTISGQKYCSASLIIPL 436
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: UPI001C8AC2D3 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Drosophila ficusphila TaxID=30025 RepID=UPI001C8AC2D3) HSP 1 Score: 93.2 bits (230), Expect = 2.570e-19 Identity = 67/230 (29.13%), Postives = 118/230 (51.30%), Query Frame = 1
Query: 4 SMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTK--GEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVE-LHESLDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLESNN-VTETLVVPL 681
++T DGWTSRAN+ Y++ TV ++N+ +++ LS K+ P E++AAS+ ++ +L V TD +M+KA IL ++ H+ C H + V + +K + + + +V + S+ A + ++ G +IQ+V TRW M ER++ + + + SL L D +LE ++ +LAPF YV + S++ VT +L+VPL
Sbjct: 23 AITMDGWTSRANDGYLTVTVHFINESFELNAAVLSTEKLIDPLNHNAENIAASVRNVLSKWNLESKVNAIVTDNASAMIKACEILQKR----HLPCFAHCLNLVVQDCLEENSIKHVLTKCKKIVKFFKCSTIAYEKFKQA---QGDNAYSLIQEVSTRWNSAFKMVERILATKEFISPVLLSLSRAPDPLTADDIELLEDIQTILAPFDYVTTQCSSSSKVTSSLIVPL 245
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: UPI001A9D7E10 (zinc finger BED domain-containing protein 4-like n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001A9D7E10) HSP 1 Score: 95.1 bits (235), Expect = 3.900e-19 Identity = 63/218 (28.90%), Postives = 107/218 (49.08%), Query Frame = 1
Query: 4 SMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHV-VVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIE-CVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHESLDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLESN 651
++TTDGWTSRA +SY+ TV +++D+ AL+C ++ E++ + +VE L ++ + TD + V A ++ + + C H ++ C+ + + A+AR +V Y +S++A GRL E+ + L V+QDV TRW SM ERLV LR + S D L +W ++ + VL P +L ++
Sbjct: 199 TLTTDGWTSRAGDSYVCVTVHVLDEDFVQHVYALACKEMPEEHTAENVLRFLRTVVEEWDLPDNIPIFVVTDNARNFVSA----VARSPWLGLQCFAHTLQLCINDAKKEVAIFSQLCAKARCIVGHYKRSARARGRLIEIQKDMHMNALEVVQDVSTRWNSEHSMMERLVKLRAPISAELSESDSVENLSTKEWKLMAAVVKVLQPLQQATAELSAD 412 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1086.3.1 >prot_A-nodosum_M_contig1086.3.1 ID=prot_A-nodosum_M_contig1086.3.1|Name=mRNA_A-nodosum_M_contig1086.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=159bp MTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASback to top mRNA from alignment at A-nodosum_M_contig1086:160493..161173+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1086.3.1 ID=mRNA_A-nodosum_M_contig1086.3.1|Name=mRNA_A-nodosum_M_contig1086.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=681bp|location=Sequence derived from alignment at A-nodosum_M_contig1086:160493..161173+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1086:160493..161173+ >mRNA_A-nodosum_M_contig1086.3.1 ID=mRNA_A-nodosum_M_contig1086.3.1|Name=mRNA_A-nodosum_M_contig1086.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=477bp|location=Sequence derived from alignment at A-nodosum_M_contig1086:160493..161173+ (Ascophyllum nodosum dioecious)back to top |