mRNA_A-nodosum_M_contig1086.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1086.3.1
Unique NamemRNA_A-nodosum_M_contig1086.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 1.410e-71
Identity = 118/216 (54.63%), Postives = 154/216 (71.30%), Query Frame = 1
Query:    1 VSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHIL-TEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHESLDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE 645
            V++TTDGWTSR NESY+S TV Y++ +WK+  L+L C+K    T GEDLAA +  MVE H LTG V+   TDCEPSM+KAG +L  + + + H+GC+ HR+E  TS VF+G  +  ++  AR +V RY KSSQ A RL +LCGI+   PL V+QDVETRWW T +M  RL+YL +A++LHES+D+V PLL   DW VL L+EP+L PFM  QK LE
Sbjct:   41 VAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQLCGILQMEPLSVMQDVETRWWSTWAMVVRLLYLMKAIKLHESMDEVHPLLSDTDWEVLRLIEPILRPFMKAQKDLE 255          
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 2.570e-71
Identity = 121/228 (53.07%), Postives = 162/228 (71.05%), Query Frame = 1
Query:    1 VSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHIL-TEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHESLDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTETLVVP 678
            V++TTDGWTSR+NESY+S TV Y++  W++  L+L+C+K    T GEDLA  I +M+E H LTG V    TDCEPSMVKAG +L    + L H+GC+ HR+E  TS VF+G  +  ++A+ARAVV RY +SSQ +GRL    GI+   PL V+QDVETRWW + +M ERL+YL +A++LHES D++AP+L   DW VL L+EP+L PFM  QK LE +  VT ++ VP
Sbjct:   77 VAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRSSQMSGRLAVFIGILKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVP 303          
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 1.820e-64
Identity = 107/227 (47.14%), Postives = 151/227 (66.52%), Query Frame = 1
Query:    1 VSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHESLDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTETLVVP 678
            V++T+DGWTS +N++Y+ FT  Y++ ++ +V L + C K    T GEDL  +++AM+  + LT   V   TDCEPSMVKAG +L E   + H+GC CHR+E +TS  F GPGV K++A AR VV+RY  SSQA+ RL ++  IV     +V+QDVETRWW T +   RL+ LRR +  HE +D + PLL   DW VL+++EP+  PF+  QK  E S +VT +LV+P
Sbjct:   50 VAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIP 276          
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.090e-62
Identity = 113/227 (49.78%), Postives = 148/227 (65.20%), Query Frame = 1
Query:    1 VSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHESLDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTETLVVP 678
            V++T+DGWT  +N++Y+SFT  Y++ ++ +V L L C K    T GEDL  +++AM+  + LTG  V   TDCE SMVKAG +L E   + H+GC CHR+E +TS  F GPGV K++A AR VV+RYT SSQA+ RL ++C IV      V+QDVETRWW T     RL+ LRR +  HE +D   PLL   DW VL+L+E +L PFM  QK LE S  VT  LV P
Sbjct:    6 VALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRLEQVCDIVQVERKNVVQDVETRWWSTYVSICRLISLRRPITEHEIIDSTPPLLKEKDWEVLQLVESLLKPFMTAQKHLEASKEVTVRLVSP 232          
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.750e-54
Identity = 98/216 (45.37%), Postives = 131/216 (60.65%), Query Frame = 1
Query:   28 SRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHESLDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLE-SNNVTETLV 672
            S +N++Y++FT  Y++ ++ +V L L   K    T GEDL  +++AM+  + LTG  V   TDCEP MVKAG +L E   + H+GC CHR E +TS  F GPGV K++A  R VV+RYT SSQA+ RL ++C IV     +V+QDVETRWW T                   +D + PLL   DW VL+L+EP+L PFM  QK LE S  VT +LV
Sbjct:    3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQMCDIVQVERKKVVQDVETRWWSTP----------------REIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLV 202          
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 7.200e-38
Identity = 90/199 (45.23%), Postives = 122/199 (61.31%), Query Frame = 1
Query:    1 VSMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKA-VLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGI-VGTIPLRVIQDVETRWW*TQSMAERLVY-LRRAVELHESLDDVAPLLGPVDWNV 588
            V +T+DGWTS AN++Y+S T   +   WK+VTL++ CSK +  T G+ LAA I+A V  H LTG V    TDCEPSMVK G +L   A V   +GC  +R+E  +S+VF+GP VKK M  AR +V+RY  SSQAA RL++     +G    RVIQDV T      S+    +Y LR ++E  +++DD+  L    D NV
Sbjct:   41 VCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTSSQAADRLKQFVKTYLGVDNKRVIQDVVTG-----SLVVPFIYDLRNSLE--DAIDDLVELPPDSDANV 232          
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: A0A224XKI7_9HEMI (Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XKI7_9HEMI)

HSP 1 Score: 102 bits (255), Expect = 1.430e-21
Identity = 63/227 (27.75%), Postives = 114/227 (50.22%), Query Frame = 1
Query:    7 MTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHESL-DDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLESNNV-TETLVVPL 681
            +TTD WTS   E+YI  T  ++++++K+ +L L CSK  +  K ED+A +++ + +   +   +++  +D   +M KA   L E     H GC  H I  +         ++  + + + +V  + +S  A  +L          PL++IQ+V+TRW  T  M ER V L  A++   ++ D   P L   +W +L+ +  +L P+  V K +  +   T  +V+PL
Sbjct:  185 ITTDSWTSNNTENYIGVTAHFLDENFKLHSLLLECSKTDASHKAEDIAGTLKRITQYWGIDQKIILAVSDNASNMQKAIQQLLE---WKHFGCFAHTINLIVKDALKCKDIQAIVEKVKRIVEYFRRSCTATEKLSRYQATSRNTPLKLIQEVQTRWNSTYYMLERFVSLEEAIKSTMAIIDKDLPKLNFEEWKILKEMCQILKPYENVTKAISGDKYCTAAIVIPL 408          
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: UPI00084F0F5D (zinc finger BED domain-containing protein 1-like n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=UPI00084F0F5D)

HSP 1 Score: 97.1 bits (240), Expect = 1.450e-19
Identity = 62/227 (27.31%), Postives = 115/227 (50.66%), Query Frame = 1
Query:    7 MTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHES-LDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLESNNV-TETLVVPL 681
            +TTD WTSR  ESYI+ TV ++ND+++++++ L CS + +    ++LA  I  +V    +   +++  +D   ++  A   ++++    H  C  H +  + +      G+ + + + + +V  + +S  +  +L       G  PL++IQDV TRW  T  M ER   L  A+    + LD   P+L   +W ++  L  VL PF  V K +      + +L++PL
Sbjct:  213 LTTDCWTSRNTESYIAVTVHFINDNFELISVLLECSTMSTNHTSKNLAHEIRRIVHEWGIEKKILLAVSDSANNIKSA---ISKELGWKHFSCFAHTLNLIVNDALHTDGITEILEKIKIIVGHFKRSYISNEKLMLFQKNNGDQPLKLIQDVPTRWNSTYFMLERFSKLETAIRSTLAVLDKDLPILTVEEWKIINELCQVLKPFEAVTKTISGQKYCSASLIIPL 436          
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: UPI001C8AC2D3 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Drosophila ficusphila TaxID=30025 RepID=UPI001C8AC2D3)

HSP 1 Score: 93.2 bits (230), Expect = 2.570e-19
Identity = 67/230 (29.13%), Postives = 118/230 (51.30%), Query Frame = 1
Query:    4 SMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTK--GEDLAASIEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIECVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVE-LHESLDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLESNN-VTETLVVPL 681
            ++T DGWTSRAN+ Y++ TV ++N+ +++    LS  K+  P     E++AAS+  ++   +L   V    TD   +M+KA  IL ++    H+ C  H +  V     +   +K  + + + +V  +  S+ A  + ++     G     +IQ+V TRW     M ER++  +  +  +  SL      L   D  +LE ++ +LAPF YV  +  S++ VT +L+VPL
Sbjct:   23 AITMDGWTSRANDGYLTVTVHFINESFELNAAVLSTEKLIDPLNHNAENIAASVRNVLSKWNLESKVNAIVTDNASAMIKACEILQKR----HLPCFAHCLNLVVQDCLEENSIKHVLTKCKKIVKFFKCSTIAYEKFKQA---QGDNAYSLIQEVSTRWNSAFKMVERILATKEFISPVLLSLSRAPDPLTADDIELLEDIQTILAPFDYVTTQCSSSSKVTSSLIVPL 245          
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Match: UPI001A9D7E10 (zinc finger BED domain-containing protein 4-like n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001A9D7E10)

HSP 1 Score: 95.1 bits (235), Expect = 3.900e-19
Identity = 63/218 (28.90%), Postives = 107/218 (49.08%), Query Frame = 1
Query:    4 SMTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAASIEAMVETHSLTGHV-VVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIE-CVTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVIQDVETRWW*TQSMAERLVYLRRAVELHESLDDVAPLLGPVDWNVLELLEPVLAPFMYVQKKLESN 651
            ++TTDGWTSRA +SY+  TV  +++D+     AL+C ++      E++   +  +VE   L  ++ +   TD   + V A      ++  + + C  H ++ C+     +     +  A+AR +V  Y +S++A GRL E+   +    L V+QDV TRW    SM ERLV LR  +    S  D    L   +W ++  +  VL P      +L ++
Sbjct:  199 TLTTDGWTSRAGDSYVCVTVHVLDEDFVQHVYALACKEMPEEHTAENVLRFLRTVVEEWDLPDNIPIFVVTDNARNFVSA----VARSPWLGLQCFAHTLQLCINDAKKEVAIFSQLCAKARCIVGHYKRSARARGRLIEIQKDMHMNALEVVQDVSTRWNSEHSMMERLVKLRAPISAELSESDSVENLSTKEWKLMAAVVKVLQPLQQATAELSAD 412          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1086.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI1.410e-7154.63Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KUY5_9PHAE2.570e-7153.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE1.820e-6447.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE1.090e-6249.78Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KVI1_9PHAE1.750e-5445.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7Y8_9PHAE7.200e-3845.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A224XKI7_9HEMI1.430e-2127.75Putative hat-25 zm (Fragment) n=1 Tax=Panstrongylu... [more]
UPI00084F0F5D1.450e-1927.31zinc finger BED domain-containing protein 1-like n... [more]
UPI001C8AC2D32.570e-1929.13E3 SUMO-protein ligase ZBED1-like n=1 Tax=Drosophi... [more]
UPI001A9D7E103.900e-1928.90zinc finger BED domain-containing protein 4-like n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1086contigA-nodosum_M_contig1086:160493..161173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCS5
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size681
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.14e-49
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size477
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866472.0454812-UTR-A-nodosum_M_contig1086:160492..1604981680866472.0454812-UTR-A-nodosum_M_contig1086:160492..160498Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1086 160493..160498 +
1680866472.0739021-UTR-A-nodosum_M_contig1086:160975..1611731680866472.0739021-UTR-A-nodosum_M_contig1086:160975..161173Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1086 160976..161173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866472.0610237-CDS-A-nodosum_M_contig1086:160498..1609751680866472.0610237-CDS-A-nodosum_M_contig1086:160498..160975Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1086 160499..160975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1086.3.1prot_A-nodosum_M_contig1086.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1086 160499..160975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1086.3.1

>prot_A-nodosum_M_contig1086.3.1 ID=prot_A-nodosum_M_contig1086.3.1|Name=mRNA_A-nodosum_M_contig1086.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=159bp
MTTDGWTSRANESYISFTVVYVNDDWKMVTLALSCSKIQSPTKGEDLAAS
IEAMVETHSLTGHVVVGNTDCEPSMVKAGHILTEKAVLMHVGCTCHRIEC
VTSLVFDGPGVKKSMARARAVVSRYTKSSQAAGRLRELCGIVGTIPLRVI
QDVETRWW*
back to top

mRNA from alignment at A-nodosum_M_contig1086:160493..161173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1086.3.1 ID=mRNA_A-nodosum_M_contig1086.3.1|Name=mRNA_A-nodosum_M_contig1086.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=681bp|location=Sequence derived from alignment at A-nodosum_M_contig1086:160493..161173+ (Ascophyllum nodosum dioecious)
GTCTCCATGACCACGGACGGATGGACGTCGCGCGCCAACGAGTCCTACAT TTCCTTCACCGTCGTGTACGTCAATGACGATTGGAAGATGGTGACGCTCG CGCTCAGCTGTTCGAAGATACAAAGTCCGACGAAGGGGGAAGACCTGGCT GCGTCCATCGAGGCCATGGTCGAGACCCACAGCCTCACGGGGCACGTGGT CGTGGGCAACACGGACTGCGAGCCGTCGATGGTGAAGGCGGGTCACATTC TCACCGAAAAAGCCGTGTTGATGCACGTTGGGTGCACCTGTCACCGGATC GAATGCGTCACGTCGCTGGTCTTTGACGGGCCCGGCGTGAAGAAGTCCAT GGCTCGAGCTCGTGCCGTGGTGAGTCGCTACACAAAGTCCTCACAGGCTG CAGGGCGACTTCGGGAGTTGTGCGGTATAGTCGGCACCATCCCTTTGAGG GTAATTCAGGACGTGGAGACGCGGTGGTGGTAGACGCAGTCGATGGCTGA GCGCCTGGTGTACCTTCGGCGTGCTGTCGAGCTGCATGAGTCCCTGGACG ACGTCGCCCCACTGCTAGGGCCGGTGGACTGGAACGTCTTGGAGCTGCTC GAGCCTGTACTTGCGCCATTCATGTATGTTCAGAAGAAGCTCGAGTCCAA CAACGTGACGGAAACCTTGGTCGTGCCGCTC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1086:160493..161173+

>mRNA_A-nodosum_M_contig1086.3.1 ID=mRNA_A-nodosum_M_contig1086.3.1|Name=mRNA_A-nodosum_M_contig1086.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=477bp|location=Sequence derived from alignment at A-nodosum_M_contig1086:160493..161173+ (Ascophyllum nodosum dioecious)
ATGACCACGGACGGATGGACGTCGCGCGCCAACGAGTCCTACATTTCCTT
CACCGTCGTGTACGTCAATGACGATTGGAAGATGGTGACGCTCGCGCTCA
GCTGTTCGAAGATACAAAGTCCGACGAAGGGGGAAGACCTGGCTGCGTCC
ATCGAGGCCATGGTCGAGACCCACAGCCTCACGGGGCACGTGGTCGTGGG
CAACACGGACTGCGAGCCGTCGATGGTGAAGGCGGGTCACATTCTCACCG
AAAAAGCCGTGTTGATGCACGTTGGGTGCACCTGTCACCGGATCGAATGC
GTCACGTCGCTGGTCTTTGACGGGCCCGGCGTGAAGAAGTCCATGGCTCG
AGCTCGTGCCGTGGTGAGTCGCTACACAAAGTCCTCACAGGCTGCAGGGC
GACTTCGGGAGTTGTGCGGTATAGTCGGCACCATCCCTTTGAGGGTAATT
CAGGACGTGGAGACGCGGTGGTGGTAG
back to top