mRNA_A-nodosum_M_contig1085.17.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1085.17.2
Unique NamemRNA_A-nodosum_M_contig1085.17.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1085.17.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1085contigA-nodosum_M_contig1085:234279..237439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1958
Hectar predicted targeting categoryother localisation
Exons3
Cds size1047
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866471.3156438-UTR-A-nodosum_M_contig1085:234278..2351821680866471.3156438-UTR-A-nodosum_M_contig1085:234278..235182Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1085 234279..235182 -
1680866471.4293962-UTR-A-nodosum_M_contig1085:237432..2374391680866471.4293962-UTR-A-nodosum_M_contig1085:237432..237439Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1085 237433..237439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866471.391225-CDS-A-nodosum_M_contig1085:235182..2354221680866471.391225-CDS-A-nodosum_M_contig1085:235182..235422Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1085 235183..235422 -
1680866471.4052947-CDS-A-nodosum_M_contig1085:235818..2365431680866471.4052947-CDS-A-nodosum_M_contig1085:235818..236543Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1085 235819..236543 -
1680866471.415266-CDS-A-nodosum_M_contig1085:237350..2374321680866471.415266-CDS-A-nodosum_M_contig1085:237350..237432Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1085 237351..237432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1085.17.2prot_A-nodosum_M_contig1085.17.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1085 235183..237432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1085.17.2

>prot_A-nodosum_M_contig1085.17.2 ID=prot_A-nodosum_M_contig1085.17.2|Name=mRNA_A-nodosum_M_contig1085.17.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=349bp
MATGNNEAGTPQPTYSQRFVIKKHKPEVPEEQRRMVKSLQQDVIQSVDAI
ILTLRSRQPRTAMGWNHGGPHDLEIQTIREQISNQISEVFEAATTSKHDR
IVHLEGLHEEVTSQVSKLEKILADKGRSCQAQTVTFAQDDISLAGGLSAM
ASSRVGSSTTAGSNGDREQNKVEPKPMDRETIAEVGAVFDGQKRVEDMMK
QLDQARKQLERASRELRAAQTTSGGGSSRGGGSSWTEVTGMDVIEEEAGE
GQDDRNATDEAEDSKTAAEASPKTLREDGHLDTPWGDCQTPHPTISVKAS
SSSKTVASRPGGTPQPIATTGRHPPSVPPVTPVLHLPRASSKNSVTWV*
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mRNA from alignment at A-nodosum_M_contig1085:234279..237439-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1085.17.2 ID=mRNA_A-nodosum_M_contig1085.17.2|Name=mRNA_A-nodosum_M_contig1085.17.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3161bp|location=Sequence derived from alignment at A-nodosum_M_contig1085:234279..237439- (Ascophyllum nodosum dioecious)
AGAAGCCATGGCTACTGGCAACAACGAGGCCGGTACACCGCAGCCTACTT
ACAGCCAGAGGTTCGTCATCAAGAAGCACAAACCCGAAGGTGAGGACAGC
AAGTCACGCCCCCCTGCCCCTAGACAGGAGTATGTCTCTCATATCACGCG
TGCTGCTGACTCGGGGCAGGCGATTCTATCCTTCTACGCTTCACCTTGTT
GTGGCCATCCGACGCTTTCTTAGCATCACAAAATCTCTCTCTCTCTCTCT
CTCTCTCTGTATGTTTGTGCTTCACATTTACCCGCTATACTTAAGAGTAG
CTGTACAGCAGTTGCCACCTCATCGCACGCTTCAGTAGAATGCTCGATAA
GGGTCGAAGCTGGATGCCCACGCTTTTGCACAAAGAACGCAGTTGAGTGC
GCAGGGCGCGACGAGATCTAAAGAACGAGCACGTTACCCTTGGGCGGCAG
ATTATACAACAACCAACCTCCAACCGAGAAATCGAACGCTCTCGCTTTGT
TGATCCGCCAAACGCTCAACTTACAGAATGATAGCTCTGGGGTGGTTTGT
TATTTTGGAGAGAGAACGCGTGCACCTCGCGCGAACGCGCAGAGCAAACA
GAGCAAACAAAGCGCGAGGGCTGTTTTGAGGATACAGTATGTAAAGCTGT
GTGATAGCGTAATAGTAAGCCCTCTCTATTTAGTCCATGAAAAGCATAAT
ACGGCCTAAATCCATCACATGTTATCCTGTACGCGGTATAAACTTGTAGA
GTAATAGTGTACTGTAGGAGCTGATCTCGGTCGCCTGGAAACACGCCATC
GACCGCAGGCCATCAAAATAATCCCCAGACGACGCGATTGACCAAGTCTC
CCCCCCTCCCTGCCCTTTCCAAAATCTGTTACTATTACTACCACAGTACC
GGAAGAGCAGCGTCGCATGGTGAAAAGCCTGCAGCAAGACGTTATTCAAT
CCGTCGACGCGATCATCCTGACCCTCCGTAGCAGGCAGCCTCGCACGGCG
ATGGGTTGGAACCACGGGGGGCCTCACGACCTCGAGATACAGACAATCAG
GGAGCAGATCTCGAACCAGATAAGTGAGGTCTTCGAGGCGGCGACTACCT
CCAAGCACGACCGCATCGTGCATCTCGAAGGGCTTCACGAAGAAGTCACG
AGTCAAGTTTCAAAGCTCGAAAAGATTTTGGCGGACAAGGGCCGCTCCTG
CCAGGCTCAGACGGTCACTTTCGCCCAAGACGATATATCACTGGCCGGAG
GGCTCTCAGCAATGGCGTCATCTCGCGTGGGTTCCAGCACCACAGCTGGA
AGCAACGGCGACCGAGAGCAGAACAAGGTGGAACCCAAGCCGATGGACCG
TGAGACCATCGCCGAAGTTGGGGCTGTCTTCGACGGCCAGAAAAGAGTCG
AGGACATGATGAAGCAACTCGACCAAGCCAGAAAGCAGCTCGAGCGCGCA
AGTCGTGAGTTGAGGGCTGCCCAAACAACAAGCGGGGGTGGTAGTAGCCG
TGGCGGCGGCAGCAGCTGGACGGAAGTTACGGGGATGGACGTCATTGAGG
AGGAAGCAGGAGAAGGACAAGACGATCGGAATGCTACTGACGAAGCGGAA
GATTCTAAAACTGCTGCTGAGGTAAGAAATAAGAGAGTGGTACATCGCTG
CTCTCTTGCAAAACGTACTGGGCCATGTAGTGCGTTTGTTTACGCGGTCA
ACTGGTGCTTCAAAGCGTCACCGTAGAGGGTCTCACTTTCCAGGGGCCGG
TGTTCTGTTTCGCGAGTAGGACAGAAACGATGGCACGCCTTCTAGGAATG
AAAACATTCGTCCTCGCCCTCGCTAACTTTTTTCCGTCTACACGACTACT
AAACCATGACCCATACGCTGTAGTTGCCGACGCAAAAAATATGGACGACA
ATTTCCATCCCTCCTCCCTCAGCCCGCGCCCCCAATTGCTTCATTTGCTC
CATTTCATCAAAACCTGATCCCGATTCTTGTGCTTGACCCGCTGGTTCGT
CCGCCGCGCTATCGAAGGCATCCCCCAAAACACTGCGAGAAGATGGGCAC
TTGGACACGCCCTGGGGCGATTGTCAGACGCCCCATCCCACCATTAGCGT
CAAGGCCTCCAGCTCCTCGAAAACCGTCGCCAGTCGACCAGGAGGTACAC
CGCAGCCGATAGCGACGACTGGAAGGCATCCGCCGTCGGTTCCACCCGTC
ACACCAGTCCTCCATCTTCCAAGGGCCTCTTCCAAAAATTCCGTGACATG
GGTTTAGGCGGGGGGGGGGGCGCGGGCTAAAGCTGCGCCCGTGGCGGAAG
GGACCCGTTTTCGGAGCTCTTTTATGGAGTCTTTGGATTCACCTTCGGTG
CCGATCCCCAGGAAGTCAAATTGATAGTCCTAGAGAGATTCCGCGTGAAA
GGGAAGATGAAACACACACACACCCGAGGCGGCCTGCGCCGAGTTGGGGA
ATACCCGCGTGTTGCGTTTCTTTCCTTGAGGGTTTCATTGCCTTGCGAGG
CTGGTATGGGGATGGTTCCAGGCGTTTGTTCCTTTTGATGTGAGAAAAAG
TCGAGCAAGTGAGTTCACATCACCAACAGCGGGCATGGTACGGGGACTTG
CTTTGGTAGCTAGGGGAACAAGAACATATGTAGGGAGGTGGTGGGGAGAA
AAAAGGAGCCTCTCGGTAGACCCATTTCGGGTTCGTTGGGGTGAAAAGCC
TGGCAACACTAGGAAAGACCCCTTCCTCCTCTCCCCACCCTCTCGACCTC
GACGGGTGAGTGATGGCTGTTGTTTATGGCATCGCGGTATGGTAGAAGGG
GAGACGTTTGACCAGCAGAATGAATTTGGTGGGTGTATTTCGTCGGTGCG
CGTGGCTTTGTCCGTTGTCCCCCGATGCGAAGATGACTGAGACCCGATTG
AGACTATGGCAAAGGAGGGATGTGGCGCGGTAGACGGGCTGGGTAGCAAA
AACACCTTTTTTCGTAGTCCGTCATGTCACCGGCCCACTGCGCAACCGAT
GTGTGAGGATGGAGTAGATTAGAGGGTTAGGCGAAGGGAGGCTGCCGTGC
GTGGTGGTGGGCGATACGTGATACCAGAGCCGCGATTGGCACGGCAGACG
TTCGCTGGAGACGCAACGTTCCTTTGGCGCGCGCACTGGTGCCGTCTTTG
TATGTGTTGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1085:234279..237439-

>mRNA_A-nodosum_M_contig1085.17.2 ID=mRNA_A-nodosum_M_contig1085.17.2|Name=mRNA_A-nodosum_M_contig1085.17.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1047bp|location=Sequence derived from alignment at A-nodosum_M_contig1085:234279..237439- (Ascophyllum nodosum dioecious)
ATGGCTACTGGCAACAACGAGGCCGGTACACCGCAGCCTACTTACAGCCA
GAGGTTCGTCATCAAGAAGCACAAACCCGAAGTACCGGAAGAGCAGCGTC
GCATGGTGAAAAGCCTGCAGCAAGACGTTATTCAATCCGTCGACGCGATC
ATCCTGACCCTCCGTAGCAGGCAGCCTCGCACGGCGATGGGTTGGAACCA
CGGGGGGCCTCACGACCTCGAGATACAGACAATCAGGGAGCAGATCTCGA
ACCAGATAAGTGAGGTCTTCGAGGCGGCGACTACCTCCAAGCACGACCGC
ATCGTGCATCTCGAAGGGCTTCACGAAGAAGTCACGAGTCAAGTTTCAAA
GCTCGAAAAGATTTTGGCGGACAAGGGCCGCTCCTGCCAGGCTCAGACGG
TCACTTTCGCCCAAGACGATATATCACTGGCCGGAGGGCTCTCAGCAATG
GCGTCATCTCGCGTGGGTTCCAGCACCACAGCTGGAAGCAACGGCGACCG
AGAGCAGAACAAGGTGGAACCCAAGCCGATGGACCGTGAGACCATCGCCG
AAGTTGGGGCTGTCTTCGACGGCCAGAAAAGAGTCGAGGACATGATGAAG
CAACTCGACCAAGCCAGAAAGCAGCTCGAGCGCGCAAGTCGTGAGTTGAG
GGCTGCCCAAACAACAAGCGGGGGTGGTAGTAGCCGTGGCGGCGGCAGCA
GCTGGACGGAAGTTACGGGGATGGACGTCATTGAGGAGGAAGCAGGAGAA
GGACAAGACGATCGGAATGCTACTGACGAAGCGGAAGATTCTAAAACTGC
TGCTGAGGCATCCCCCAAAACACTGCGAGAAGATGGGCACTTGGACACGC
CCTGGGGCGATTGTCAGACGCCCCATCCCACCATTAGCGTCAAGGCCTCC
AGCTCCTCGAAAACCGTCGCCAGTCGACCAGGAGGTACACCGCAGCCGAT
AGCGACGACTGGAAGGCATCCGCCGTCGGTTCCACCCGTCACACCAGTCC
TCCATCTTCCAAGGGCCTCTTCCAAAAATTCCGTGACATGGGTTTAG
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