mRNA_A-nodosum_M_contig1085.15.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1085.15.1
Unique NamemRNA_A-nodosum_M_contig1085.15.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1085.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1085contigA-nodosum_M_contig1085:217540..219788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1030
Hectar predicted targeting categoryother localisation
Exons4
Cds size621
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1085.15.1prot_A-nodosum_M_contig1085.15.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1085 218338..219781 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866471.2326083-UTR-A-nodosum_M_contig1085:217539..2177751680866471.2326083-UTR-A-nodosum_M_contig1085:217539..217775Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1085 217540..217775 -
1680866471.2449756-UTR-A-nodosum_M_contig1085:218171..2183371680866471.2449756-UTR-A-nodosum_M_contig1085:218171..218337Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1085 218172..218337 -
1680866471.288225-UTR-A-nodosum_M_contig1085:219781..2197881680866471.288225-UTR-A-nodosum_M_contig1085:219781..219788Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1085 219782..219788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866471.2573102-CDS-A-nodosum_M_contig1085:218337..2184191680866471.2573102-CDS-A-nodosum_M_contig1085:218337..218419Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1085 218338..218419 -
1680866471.2679706-CDS-A-nodosum_M_contig1085:218442..2188991680866471.2679706-CDS-A-nodosum_M_contig1085:218442..218899Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1085 218443..218899 -
1680866471.2779348-CDS-A-nodosum_M_contig1085:219699..2197811680866471.2779348-CDS-A-nodosum_M_contig1085:219699..219781Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1085 219700..219781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1085.15.1

>prot_A-nodosum_M_contig1085.15.1 ID=prot_A-nodosum_M_contig1085.15.1|Name=mRNA_A-nodosum_M_contig1085.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=207bp
MATGNNKAGTPQPTYSQRFVIKKHKPEVPEEQRRMVKSLQQEVIQSVDAI
ILTLRSGQPRTAMGWNHGGPHDLDIQAIREQISNQISEVFEAATTSKHDR
IVYLEGLHKEVTSQVSKLEKILADKGRSCQAQTVTFAQDDISLAGGFSAM
ASSRVGPSTTAGSNGDREQNKVEPKPMDRGLRRPEKSRGHDEATRPSQKG
VRARKS*
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mRNA from alignment at A-nodosum_M_contig1085:217540..219788-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1085.15.1 ID=mRNA_A-nodosum_M_contig1085.15.1|Name=mRNA_A-nodosum_M_contig1085.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2249bp|location=Sequence derived from alignment at A-nodosum_M_contig1085:217540..219788- (Ascophyllum nodosum dioecious)
AGAAGCCATGGCTACTGGCAACAACAAGGCCGGTACACCGCAGCCTACTT
ACAGCCAGAGGTTCGTCATCAAGAAGCACAAACCCGAAGGTGAGGACAGC
AAGTCACGCCCCCCTGCTCCTGGACAGGAGTATGTCTCTCCTATCATGCG
TGCTGCTGACTCGGGGCAGGCGATTCTACCCTTCTATGCTTCAACTTGTT
GTGGCCATCCGACGCTTTCTTAGCATCACAAAATCTCTCTCTCTCTCTCT
CTCTCTCTGTATGTTTGTGCTTCACATTTACCCGCTATACTTAAGAGTAG
CTGTACAGCAGTTGCCACCACATCGCACGCTTCAGTAGAATGCTCGATGA
GGGTCGAAGCTGGATGCCCACGCATTTGCACAAAGAACGCAGTTGAGTGC
TCAGGGCGTGAGGAGATCTAAAGAACGAGCACGTTACCCTTGGGCGGCAG
ATTATACAACAACCAACTTCCAACCGAGAAATCGAACGCTCTCGCTTTGT
TGATCCGCCAAACGCTCAACTACAGAATGATAGCTCTGGGGTGGTTTGTT
ATTTTGGAGAGAGAATGCGTGCACCTCGCACGAATGCGCAGAGCAAACAG
AGCGCGAGGGCTGTTTTGAGGATACAGTATGTACCGGTAAAGCTGTGTGA
TAGCGTAATAGTAAGCCCTCTCTATCTAGTCCATGAAAAGCATAATACGG
CCTAAATCCATCACATGTTATCCTCTACGCGGTATAAACTTGTAGAGTAG
TGTACTGTAGGAGCTGATCTCGGTCGCCTGGAAACACGCCATCGACCGCA
GGCCATCAAAATAATCCCCAGACGACGTGATTGACCAAGTCTCCCCCCCT
CCCTGCCCTGTCCAAAATCTGTTACAATTACTACCACAGTACCGGAAGAG
CAGCGTCGCATGGTGAAAAGCCTGCAGCAAGAAGTTATTCAATCCGTCGA
CGCGATCATCCTGACCCTCCGTAGCGGGCAGCCTCGCACGGCGATGGGTT
GGAACCACGGGGGGCCTCACGACCTCGATATACAGGCAATCAGGGAGCAG
ATCTCGAACCAGATAAGTGAGGTCTTCGAGGCGGCGACTACCTCCAAGCA
CGACCGCATCGTGTATCTCGAAGGGCTTCACAAAGAAGTCACGAGTCAAG
TTTCAAAGCTCGAAAAGATTCTGGCGGACAAGGGCCGCTCCTGCCAGGCT
CAGACGGTCACTTTCGCCCAAGACGATATATCACTGGCCGGGGGGTTCTC
AGCAATGGCGTCGTCTCGCGTGGGTCCCAGCACCACAGCTGGAAGCAACG
GCGACCGAGAGCAGAACAAGGTGGAACCCAAGCCGATGGATCGAGGGACC
ATCGCCGAAGTTGGGGCTGTCTTCGACGGCCAGAAAAGAGTCGAGGACAT
GATGAAGCAACCCGACCAAGCCAGAAAGGAGTTCGAGCGCGCAAGTCATG
AGTTGAGGGCTGCCCAAACAACAAGCGGGGGTGGTGGTAGTAGCCGTGGC
GGCGGCAGCAGCTGGACGGAAGTTACGGGGATGAGTGTCATTGAGGAGGA
AGCAGGAGAAGGACAAGACGATCAGAATGCTACTGACGAAGCGGAAGATT
CTAGGACTGCTGCTGAGGTAAGAAATAAGAGAGTGGTACATCGCTGCTCT
CTCGCAAAACGTACTGATCCATGTACTGCGTTTGTTTACGCGGTCAACTG
GTGCTTCAAAGCGTCACCGTAGAGGGTCTCACTTTCCAGGCGCCGGTGTT
CTGTTTCGCGAGTAGTACAGAAACGATGGCACGCCTTCTAGGAATGGAAA
CGTTCGTCCCCGCCCTCGCTAACTTGTTTCCGTCTACACGACTACGAAAC
CATGACCCATACGCTGTAGTTGCCGACGCAAAACATATGGACGACAATTT
CCATCCCTCCTCCCTCAGCCCGCGCCCCCAATTGCTTCATTTGCTCCATT
TTGTCAAAACCTGATGCCGATTCTTGTGCTTGACCCGCTGGTTCGTCCGC
CGCGCTATCGAAGGCATCCCCCAAAACACTGCGAGAAGATGGGCACTTGG
ACACGCCCTGGGGCGATTGTCAGACGCCCCATCCCACCATTAGCGTCAAG
GCCTCCAGCTCCTTGAAAAGCCGTCGCCAGTCGACCAGGAGATACGCCGC
AGCCGATAGCGACGACTGGAAGTCATCCGCCGTCGGTTCCACCCGTCACA
CCAGTCCTCCATCTTCCAAGGGCCTCTTCCAAAAGTTCCGTGACATGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1085:217540..219788-

>mRNA_A-nodosum_M_contig1085.15.1 ID=mRNA_A-nodosum_M_contig1085.15.1|Name=mRNA_A-nodosum_M_contig1085.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=621bp|location=Sequence derived from alignment at A-nodosum_M_contig1085:217540..219788- (Ascophyllum nodosum dioecious)
ATGGCTACTGGCAACAACAAGGCCGGTACACCGCAGCCTACTTACAGCCA
GAGGTTCGTCATCAAGAAGCACAAACCCGAAGTACCGGAAGAGCAGCGTC
GCATGGTGAAAAGCCTGCAGCAAGAAGTTATTCAATCCGTCGACGCGATC
ATCCTGACCCTCCGTAGCGGGCAGCCTCGCACGGCGATGGGTTGGAACCA
CGGGGGGCCTCACGACCTCGATATACAGGCAATCAGGGAGCAGATCTCGA
ACCAGATAAGTGAGGTCTTCGAGGCGGCGACTACCTCCAAGCACGACCGC
ATCGTGTATCTCGAAGGGCTTCACAAAGAAGTCACGAGTCAAGTTTCAAA
GCTCGAAAAGATTCTGGCGGACAAGGGCCGCTCCTGCCAGGCTCAGACGG
TCACTTTCGCCCAAGACGATATATCACTGGCCGGGGGGTTCTCAGCAATG
GCGTCGTCTCGCGTGGGTCCCAGCACCACAGCTGGAAGCAACGGCGACCG
AGAGCAGAACAAGGTGGAACCCAAGCCGATGGATCGAGGTCTTCGACGGC
CAGAAAAGAGTCGAGGACATGATGAAGCAACCCGACCAAGCCAGAAAGGA
GTTCGAGCGCGCAAGTCATGA
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