mRNA_A-nodosum_M_contig10846.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10846.1.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE) HSP 1 Score: 134 bits (338), Expect = 2.620e-33 Identity = 69/182 (37.91%), Postives = 107/182 (58.79%), Query Frame = 1
Query: 1 SIRMVLGIAAVKDWELRQLDVDMAYLEVGVTEELYIELPEDYRESCDQVGRLQKAMYGLVHAGLLWSKMFSSELAAREFEQCQADPCVFRRVLRGKVVVIIVVYVDDLLVASETKRDEEQAIKDLRSCFPIKDVREAEFYLGCRITRDRNAGTLNVDQHHYVRTVASKFNDEKTSTTPVVAG 546
SI+++L +A K L DV AY + EE+++ LP + ++G+ ++A+YGL +G W + L FEQC+ADPCVFR+++ VV+IIV+YVDD+LVA E+ D E+ + L+ FP K++ E E++ C I RD AGTL + Q Y+ + +F+ + TS P G
Sbjct: 255 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVA-ESDEDCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRFDVQSTSRIPASPG 435
BLAST of mRNA_A-nodosum_M_contig10846.1.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS) HSP 1 Score: 133 bits (334), Expect = 1.880e-32 Identity = 68/169 (40.24%), Postives = 106/169 (62.72%), Query Frame = 1
Query: 1 SIRMVLGIAAVKDWELRQLDVDMAYLEVGVTEELYIELPEDYRESCDQVGRLQKAMYGLVHAGLLWSKMFSSELAAREFEQCQADPCVFRRVLRGKVVVIIVVYVDDLLVASETKRDEEQAIKDLRSCFPIKDVREAEFYLGCRITRDRNAGTLNVDQHHYVRTVASKF 507
S+R LGIAA+KD E+ Q+DV AYL + EE+Y+ PE Y + +V RL+K +YGL +G W++ F +L + F + +AD CV++R+ G++ II V+VDDLL+ SET D + +L + F +KD+ E + +G I RDR GT+++ Q Y+ V ++F
Sbjct: 971 SVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMT-IITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRF 1138
BLAST of mRNA_A-nodosum_M_contig10846.1.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 132 bits (332), Expect = 3.210e-32 Identity = 67/182 (36.81%), Postives = 108/182 (59.34%), Query Frame = 1
Query: 1 SIRMVLGIAAVKDWELRQLDVDMAYLEVGVTEELYIELPEDYRESCDQVGRLQKAMYGLVHAGLLWSKMFSSELAAREFEQCQADPCVFRRVLRGKVVVIIVVYVDDLLVASETKRDEEQAIKDLRSCFPIKDVREAEFYLGCRITRDRNAGTLNVDQHHYVRTVASKFNDEKTSTTPVVAG 546
SI+++L +A K L DV AY + EE++++LP + ++ + ++A+YGL +G W + L FEQC+ADPCVFR+++ VV+IIV+YVDD+LVA + D E+ + L FP K++ E +++ GC I RD +AGTL + Q Y+ ++ +F+ + TS P G
Sbjct: 421 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPG 601
BLAST of mRNA_A-nodosum_M_contig10846.1.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM) HSP 1 Score: 132 bits (332), Expect = 3.490e-32 Identity = 60/184 (32.61%), Postives = 110/184 (59.78%), Query Frame = 1
Query: 1 SIRMVLGIAAVKDWELRQLDVDMAYLEVGVTEELYIELPEDYRESCDQVGRLQKAMYGLVHAGLLWSKMFSSELAAREFEQCQADPCVFRRVLRGKVVVIIVVYVDDLLVASETKRDEEQAIKDLRSCFPIKDVREAEFYLGCRITRDRNAGTLNVDQHHYVRTVASKFNDEKTSTTPVVAGEN 552
++R + ++A+KDWE+RQ+D+ AYL + EE+++E PE + + +V RL+ +YGL AG +W+K +++L F + ADPCV+ GK+ I+ V+VDD+++ +++ + + L+ F +KD+ E + LG +I R+R T+ + Q +Y+ T+ +FN K + P+ N
Sbjct: 947 AVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKIT-ILTVWVDDIILCGDSESRIDTTVSALKKIFEVKDLGEPKLLLGIQIIRNRKLKTITISQRNYINTILERFNYSKINPIPIPLDPN 1129
BLAST of mRNA_A-nodosum_M_contig10846.1.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 132 bits (331), Expect = 4.700e-32 Identity = 67/182 (36.81%), Postives = 107/182 (58.79%), Query Frame = 1
Query: 1 SIRMVLGIAAVKDWELRQLDVDMAYLEVGVTEELYIELPEDYRESCDQVGRLQKAMYGLVHAGLLWSKMFSSELAAREFEQCQADPCVFRRVLRGKVVVIIVVYVDDLLVASETKRDEEQAIKDLRSCFPIKDVREAEFYLGCRITRDRNAGTLNVDQHHYVRTVASKFNDEKTSTTPVVAG 546
SI+++L +A K L DV AY + EE++++LP + ++ + ++A+YGL +G W + L FEQC+ADPCVFR+++ VV+IIV+YVDD+LVA + D E+ + L FP K++ E +++ GC I RD AGTL + Q Y+ ++ +F+ + TS P G
Sbjct: 830 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG 1010
BLAST of mRNA_A-nodosum_M_contig10846.1.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 132 bits (331), Expect = 4.830e-32 Identity = 67/182 (36.81%), Postives = 107/182 (58.79%), Query Frame = 1
Query: 1 SIRMVLGIAAVKDWELRQLDVDMAYLEVGVTEELYIELPEDYRESCDQVGRLQKAMYGLVHAGLLWSKMFSSELAAREFEQCQADPCVFRRVLRGKVVVIIVVYVDDLLVASETKRDEEQAIKDLRSCFPIKDVREAEFYLGCRITRDRNAGTLNVDQHHYVRTVASKFNDEKTSTTPVVAG 546
SI+++L +A K L DV AY + EE++++LP + ++ + ++A+YGL +G W + L FEQC+ADPCVFR+++ VV+IIV+YVDD+LVA + D E+ + L FP K++ E +++ GC I RD AGTL + Q Y+ ++ +F+ + TS P G
Sbjct: 1209 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG 1389
BLAST of mRNA_A-nodosum_M_contig10846.1.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 132 bits (331), Expect = 4.850e-32 Identity = 67/182 (36.81%), Postives = 107/182 (58.79%), Query Frame = 1
Query: 1 SIRMVLGIAAVKDWELRQLDVDMAYLEVGVTEELYIELPEDYRESCDQVGRLQKAMYGLVHAGLLWSKMFSSELAAREFEQCQADPCVFRRVLRGKVVVIIVVYVDDLLVASETKRDEEQAIKDLRSCFPIKDVREAEFYLGCRITRDRNAGTLNVDQHHYVRTVASKFNDEKTSTTPVVAG 546
SI+++L +A K L DV AY + EE++++LP + ++ + ++A+YGL +G W + L FEQC+ADPCVFR+++ VV+IIV+YVDD+LVA + D E+ + L FP K++ E +++ GC I RD AGTL + Q Y+ ++ +F+ + TS P G
Sbjct: 1229 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG 1409
BLAST of mRNA_A-nodosum_M_contig10846.1.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 132 bits (331), Expect = 4.870e-32 Identity = 67/182 (36.81%), Postives = 107/182 (58.79%), Query Frame = 1
Query: 1 SIRMVLGIAAVKDWELRQLDVDMAYLEVGVTEELYIELPEDYRESCDQVGRLQKAMYGLVHAGLLWSKMFSSELAAREFEQCQADPCVFRRVLRGKVVVIIVVYVDDLLVASETKRDEEQAIKDLRSCFPIKDVREAEFYLGCRITRDRNAGTLNVDQHHYVRTVASKFNDEKTSTTPVVAG 546
SI+++L +A K L DV AY + EE++++LP + ++ + ++A+YGL +G W + L FEQC+ADPCVFR+++ VV+IIV+YVDD+LVA + D E+ + L FP K++ E +++ GC I RD AGTL + Q Y+ ++ +F+ + TS P G
Sbjct: 1372 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG 1552
BLAST of mRNA_A-nodosum_M_contig10846.1.1 vs. uniprot
Match: A0A284R853_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284R853_ARMOS) HSP 1 Score: 129 bits (325), Expect = 5.910e-32 Identity = 67/169 (39.64%), Postives = 104/169 (61.54%), Query Frame = 1
Query: 1 SIRMVLGIAAVKDWELRQLDVDMAYLEVGVTEELYIELPEDYRESCDQVGRLQKAMYGLVHAGLLWSKMFSSELAAREFEQCQADPCVFRRVLRGKVVVIIVVYVDDLLVASETKRDEEQAIKDLRSCFPIKDVREAEFYLGCRITRDRNAGTLNVDQHHYVRTVASKF 507
S+ LGIAA+KD E+ Q+DV AYL + EE+Y+ PE Y + +V RL+K +YGL +G W+ F +L + F + +AD CV++R+ G++ II V+VDDLL+ SET D + +L + F +KD+ E + +G I RDR GT+++ Q Y+ V ++F
Sbjct: 64 SVHAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGRVCRLRKTLYGLKQSGCEWNWEFDRKLTSIGFSKLEADHCVYKRIREGRMT-IITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRF 231
BLAST of mRNA_A-nodosum_M_contig10846.1.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 130 bits (328), Expect = 1.070e-31 Identity = 66/182 (36.26%), Postives = 106/182 (58.24%), Query Frame = 1
Query: 1 SIRMVLGIAAVKDWELRQLDVDMAYLEVGVTEELYIELPEDYRESCDQVGRLQKAMYGLVHAGLLWSKMFSSELAAREFEQCQADPCVFRRVLRGKVVVIIVVYVDDLLVASETKRDEEQAIKDLRSCFPIKDVREAEFYLGCRITRDRNAGTLNVDQHHYVRTVASKFNDEKTSTTPVVAG 546
SI+++L +A K L DV AY + EE++++LP + ++ + ++A+YGL +G W + L FEQC+ADPCVFR+++ VV+IIV+YVDD+LVA + D E+ + L FP K++ E +++ GC I RD GTL + Q Y+ ++ +F+ + TS P G
Sbjct: 384 SIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPG 564 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10846.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10846.1.1 >prot_A-nodosum_M_contig10846.1.1 ID=prot_A-nodosum_M_contig10846.1.1|Name=mRNA_A-nodosum_M_contig10846.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=194bp MVLGIAAVKDWELRQLDVDMAYLEVGVTEELYIELPEDYRESCDQVGRLQback to top mRNA from alignment at A-nodosum_M_contig10846:9388..9978- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10846.1.1 ID=mRNA_A-nodosum_M_contig10846.1.1|Name=mRNA_A-nodosum_M_contig10846.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=591bp|location=Sequence derived from alignment at A-nodosum_M_contig10846:9388..9978- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10846:9388..9978- >mRNA_A-nodosum_M_contig10846.1.1 ID=mRNA_A-nodosum_M_contig10846.1.1|Name=mRNA_A-nodosum_M_contig10846.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at A-nodosum_M_contig10846:9388..9978- (Ascophyllum nodosum dioecious)back to top |