mRNA_A-nodosum_M_contig1083.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1083.4.1
Unique NamemRNA_A-nodosum_M_contig1083.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1083.4.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 6.950e-38
Identity = 67/151 (44.37%), Postives = 107/151 (70.86%), Query Frame = 1 
Query:    7 RDWESGVLDMNQTAYAENLVAQYEISATSKIPGSPGVDLGPRKDGEPGGKDEFSLYQPLVGSLMWLSVMTRPDIVNALRACARHSHNPSPRHWKALL*IATYVTSTKEIGLKFGRGFGLKLTVFADADYTAAYNDKRSVSGVAAMLGDAAI 459
            RD ++G L ++QTAY +++V ++++ +TS+IP +PG DLGP+++ E GG  E+ + +  +GS+MW+S  +RPD+  A+RA ARH+H P+ RHW A+  I  Y+  T+++G+ + RG GL LTV+ DA Y A  +D+RSVSG+A  +G   I
Sbjct:   55 RDADAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPKREDEEGG--EWPVREA-IGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLTVYVDASY-ANTDDRRSVSGLATTVGGTVI 201
[Close]
BLAST of mRNA_A-nodosum_M_contig1083.4.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.210e-37
Identity = 71/151 (47.02%), Postives = 107/151 (70.86%), Query Frame = 1 
Query:    7 RDWESGVLDMNQTAYAENLVAQYEISATSKIPGSPGVDLGPRKDGEPGGKDEFSLYQPLVGSLMWLSVMTRPDIVNALRACARHSHNPSPRHWKALL*IATYVTSTKEIGLKFGRGFGLKLTVFADADYTAAYNDKRSVSGVAAMLGDAAI 459
            RD E+G L ++QTAY +++V ++++ +TS IP SPGVD+GP++D E GG  E+ + +  +GS+MW+S  +RPDI  A+RA ARH+H P+ RHWKA++ I  Y+  T+++G+ + RG GL L V+ DA Y  A  D+RSVSG+A  +G   I
Sbjct:  238 RDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGG--EWPVREA-IGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADA-EDRRSVSGLATTVGGTVI 384
[Close]
BLAST of mRNA_A-nodosum_M_contig1083.4.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.110e-36
Identity = 66/151 (43.71%), Postives = 105/151 (69.54%), Query Frame = 1 
Query:    7 RDWESGVLDMNQTAYAENLVAQYEISATSKIPGSPGVDLGPRKDGEPGGKDEFSLYQPLVGSLMWLSVMTRPDIVNALRACARHSHNPSPRHWKALL*IATYVTSTKEIGLKFGRGFGLKLTVFADADYTAAYNDKRSVSGVAAMLGDAAI 459
            RD E+G L ++QTAY +++V ++++ +TS+IP +PG DLGP+++ E GG  E+ + +  +GS+MW+S  +RPD+  A+RA ARH+H P+ RHW A+  I  Y+  T+++G+ + RG GL L V+ DA Y A   D+RSVSG+A  +G   +
Sbjct:   55 RDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWPVREA-IGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVV 201
[Close]
BLAST of mRNA_A-nodosum_M_contig1083.4.1 vs. uniprot
Match: A0A6H5K616_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K616_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 6.430e-36
Identity = 70/151 (46.36%), Postives = 104/151 (68.87%), Query Frame = 1 
Query:    7 RDWESGVLDMNQTAYAENLVAQYEISATSKIPGSPGVDLGPRKDGEPGGKDEFSLYQPLVGSLMWLSVMTRPDIVNALRACARHSHNPSPRHWKALL*IATYVTSTKEIGLKFGRGFGLKLTVFADADYTAAYNDKRSVSGVAAMLGDAAI 459
            R  E+G L ++QTAY +++V ++E  +TS IP SPGVDLGP++D E GG  E+ + +  +GS+MW+S  +RPD+  A+RA A H+H P+ RHW A+  I  Y+  T+++G+ + RG GL LTV+ DA Y A  +D+RSVSG+A  +G   I
Sbjct:  156 RGVEAGTLRISQTAYIDSMVKRFEAQSTSLIPASPGVDLGPKRDDENGG--EWPVREA-IGSMMWVSTFSRPDVSFAVRAVAHHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLTVYVDASY-ANTDDRRSVSGLATTVGGTVI 302
[Close]
BLAST of mRNA_A-nodosum_M_contig1083.4.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.440e-35
Identity = 69/151 (45.70%), Postives = 106/151 (70.20%), Query Frame = 1 
Query:    7 RDWESGVLDMNQTAYAENLVAQYEISATSKIPGSPGVDLGPRKDGEPGGKDEFSLYQPLVGSLMWLSVMTRPDIVNALRACARHSHNPSPRHWKALL*IATYVTSTKEIGLKFGRGFGLKLTVFADADYTAAYNDKRSVSGVAAMLGDAAI 459
            RD E+G L ++QTAY +++V ++++ +TS+IP SPGVDLGP++D E GG  E+ + +  +GS+MW+S  +RPD+  A+RA ARH+H P+ RHW A+  I  Y+  T+++G+ + RG GL L V+ DA Y A   D+RSVSG+A  +G   +
Sbjct:  529 RDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGG--EWPVREA-IGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVV 675
[Close]
BLAST of mRNA_A-nodosum_M_contig1083.4.1 vs. uniprot
Match: A0A6H5KYI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI5_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 5.620e-35
Identity = 69/151 (45.70%), Postives = 106/151 (70.20%), Query Frame = 1 
Query:    7 RDWESGVLDMNQTAYAENLVAQYEISATSKIPGSPGVDLGPRKDGEPGGKDEFSLYQPLVGSLMWLSVMTRPDIVNALRACARHSHNPSPRHWKALL*IATYVTSTKEIGLKFGRGFGLKLTVFADADYTAAYNDKRSVSGVAAMLGDAAI 459
            RD E+G L ++QTAY ++++ +++  +TS+IP SPGVDLGP++D E GG  E+S+ +  +GS+MW+S  +RPD+  A+RA ARH+H P+ RHW A+  I  Y+  T+++G+ + RG GL L V+ DA Y A   D+RSVSG+A  +G   +
Sbjct:  932 RDVEAGTLRISQTAYIDSMLIRFDEQSTSRIPASPGVDLGPKRDDEKGG--EWSVREA-IGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILFYLKGTRDLGITYQRGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVV 1078
[Close]
BLAST of mRNA_A-nodosum_M_contig1083.4.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 6.470e-35
Identity = 66/151 (43.71%), Postives = 105/151 (69.54%), Query Frame = 1 
Query:    7 RDWESGVLDMNQTAYAENLVAQYEISATSKIPGSPGVDLGPRKDGEPGGKDEFSLYQPLVGSLMWLSVMTRPDIVNALRACARHSHNPSPRHWKALL*IATYVTSTKEIGLKFGRGFGLKLTVFADADYTAAYNDKRSVSGVAAMLGDAAI 459
            RD E+G L ++QTAY +++V ++++ +TS+IP +PG DLGP+++ E GG  E+ + +  +GS+MW+S  +RPD+  A+RA ARH+H P+ RHW A+  I  Y+  T+++G+ + RG GL L V+ DA Y A   D+RSVSG+A  +G   +
Sbjct:  198 RDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPQREDEEGG--EWPVREA-IGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVV 344
[Close]
BLAST of mRNA_A-nodosum_M_contig1083.4.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 7.960e-35
Identity = 66/151 (43.71%), Postives = 105/151 (69.54%), Query Frame = 1 
Query:    7 RDWESGVLDMNQTAYAENLVAQYEISATSKIPGSPGVDLGPRKDGEPGGKDEFSLYQPLVGSLMWLSVMTRPDIVNALRACARHSHNPSPRHWKALL*IATYVTSTKEIGLKFGRGFGLKLTVFADADYTAAYNDKRSVSGVAAMLGDAAI 459
            RD E+G L ++QTAY +++V ++++ +TS+IP +PG DLGP+++ E GG  E+ + +  +GS+MW+S  +RPD+  A+RA ARH+H P+ RHW A+  I  Y+  T+++G+ + RG GL L V+ DA Y A   D+RSVSG+A  +G   +
Sbjct:  262 RDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWPVREA-IGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVV 408
[Close]
BLAST of mRNA_A-nodosum_M_contig1083.4.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 8.970e-35
Identity = 67/151 (44.37%), Postives = 106/151 (70.20%), Query Frame = 1 
Query:    7 RDWESGVLDMNQTAYAENLVAQYEISATSKIPGSPGVDLGPRKDGEPGGKDEFSLYQPLVGSLMWLSVMTRPDIVNALRACARHSHNPSPRHWKALL*IATYVTSTKEIGLKFGRGFGLKLTVFADADYTAAYNDKRSVSGVAAMLGDAAI 459
            RD E+G L ++QTAY +++VA++++ +TS+IP +PG DLGP+++ E GG  E+ + +  +GS+MW+S  +RPD+  A+RA ARH+H P+ RHW A+  I  Y+  T+++G+ + RG GL L V+ DA Y A   D+RSVSG+A  +G   +
Sbjct:  486 RDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGG--EWPVREA-IGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVV 632
[Close]
BLAST of mRNA_A-nodosum_M_contig1083.4.1 vs. uniprot
Match: A0A6H5K4T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T5_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.610e-34
Identity = 64/148 (43.24%), Postives = 104/148 (70.27%), Query Frame = 1 
Query:   16 ESGVLDMNQTAYAENLVAQYEISATSKIPGSPGVDLGPRKDGEPGGKDEFSLYQPLVGSLMWLSVMTRPDIVNALRACARHSHNPSPRHWKALL*IATYVTSTKEIGLKFGRGFGLKLTVFADADYTAAYNDKRSVSGVAAMLGDAAI 459
            ++G L ++QTAY +++V ++++ +TS+IP +PG DLGP+++ E GG  E+ + +  +GS+MW+S  +RPD+  A+RA ARH+H P+ RHW A+  I  Y+  T+++G+ + RG GL L V+ DA Y A   D+RSVSG+A  +G A +
Sbjct:  155 DAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWPVREA-IGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGLGLGLAVYVDASY-ADTEDRRSVSGLATTVGGAVV 298
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1083.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBH1_9PHAE6.950e-3844.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE1.210e-3747.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPT0_9PHAE1.110e-3643.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K616_9PHAE6.430e-3646.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE1.440e-3545.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KYI5_9PHAE5.620e-3545.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVD4_9PHAE6.470e-3543.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTL3_9PHAE7.960e-3543.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K274_9PHAE8.970e-3544.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4T5_9PHAE1.610e-3443.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1083contigA-nodosum_M_contig1083:225826..226293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog120017.I2FPM3
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size468
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons1
Evalue9e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta
DescriptionEncoded by
Cds size267
COG categoryJ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866469.1903472-UTR-A-nodosum_M_contig1083:225825..2258581680866469.1903472-UTR-A-nodosum_M_contig1083:225825..225858Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1083 225826..225858 +
1680866469.2764523-UTR-A-nodosum_M_contig1083:226125..2262931680866469.2764523-UTR-A-nodosum_M_contig1083:226125..226293Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1083 226126..226293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866469.2668808-CDS-A-nodosum_M_contig1083:225858..2261251680866469.2668808-CDS-A-nodosum_M_contig1083:225858..226125Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1083 225859..226125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1083.4.1prot_A-nodosum_M_contig1083.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1083 225859..226125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1083.4.1

>prot_A-nodosum_M_contig1083.4.1 ID=prot_A-nodosum_M_contig1083.4.1|Name=mRNA_A-nodosum_M_contig1083.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=89bp
MNQTAYAENLVAQYEISATSKIPGSPGVDLGPRKDGEPGGKDEFSLYQPL
VGSLMWLSVMTRPDIVNALRACARHSHNPSPRHWKALL*
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mRNA from alignment at A-nodosum_M_contig1083:225826..226293+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1083.4.1 ID=mRNA_A-nodosum_M_contig1083.4.1|Name=mRNA_A-nodosum_M_contig1083.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=468bp|location=Sequence derived from alignment at A-nodosum_M_contig1083:225826..226293+ (Ascophyllum nodosum dioecious)
TTAGTTCGCGACTGGGAATCAGGCGTGCTAGATATGAACCAGACCGCATA
TGCGGAAAACCTGGTAGCGCAGTATGAAATTTCCGCAACCTCGAAGATCC
CAGGTAGCCCGGGTGTAGACCTAGGTCCTAGGAAGGATGGCGAGCCGGGG
GGTAAGGATGAATTTTCCCTGTACCAACCCTTAGTTGGTAGCCTTATGTG
GCTATCAGTCATGACGAGACCAGATATCGTTAATGCGTTACGCGCGTGCG
CGCGCCACAGCCATAACCCTAGTCCCCGGCACTGGAAGGCGCTACTGTAG
ATCGCCACGTACGTGACTTCTACGAAAGAGATTGGTCTGAAATTTGGGCG
TGGTTTTGGCCTGAAGCTTACTGTGTTCGCTGATGCTGATTACACGGCGG
CATATAATGATAAAAGGTCCGTGTCTGGTGTGGCAGCGATGTTGGGTGAC
GCAGCCATTGGCTGGAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1083:225826..226293+

>mRNA_A-nodosum_M_contig1083.4.1 ID=mRNA_A-nodosum_M_contig1083.4.1|Name=mRNA_A-nodosum_M_contig1083.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=267bp|location=Sequence derived from alignment at A-nodosum_M_contig1083:225826..226293+ (Ascophyllum nodosum dioecious)
ATGAACCAGACCGCATATGCGGAAAACCTGGTAGCGCAGTATGAAATTTC
CGCAACCTCGAAGATCCCAGGTAGCCCGGGTGTAGACCTAGGTCCTAGGA
AGGATGGCGAGCCGGGGGGTAAGGATGAATTTTCCCTGTACCAACCCTTA
GTTGGTAGCCTTATGTGGCTATCAGTCATGACGAGACCAGATATCGTTAA
TGCGTTACGCGCGTGCGCGCGCCACAGCCATAACCCTAGTCCCCGGCACT
GGAAGGCGCTACTGTAG
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