mRNA_A-nodosum_M_contig1082.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1082.5.1
Unique NamemRNA_A-nodosum_M_contig1082.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1082.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1082contigA-nodosum_M_contig1082:181714..183049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size846
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866468.930307-UTR-A-nodosum_M_contig1082:181713..1820121680866468.930307-UTR-A-nodosum_M_contig1082:181713..182012Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1082 181714..182012 +
1680866468.9407773-UTR-A-nodosum_M_contig1082:182502..1825861680866468.9407773-UTR-A-nodosum_M_contig1082:182502..182586Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1082 182503..182586 +
1680866468.963719-UTR-A-nodosum_M_contig1082:182778..1830491680866468.963719-UTR-A-nodosum_M_contig1082:182778..183049Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1082 182779..183049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866468.953488-CDS-A-nodosum_M_contig1082:182586..1827781680866468.953488-CDS-A-nodosum_M_contig1082:182586..182778Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1082 182587..182778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1082.5.1prot_A-nodosum_M_contig1082.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1082 182587..182778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1082.5.1

>prot_A-nodosum_M_contig1082.5.1 ID=prot_A-nodosum_M_contig1082.5.1|Name=mRNA_A-nodosum_M_contig1082.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=64bp
MQTYSVAGWRVVDRSEVTHALRMIADGRGRDHLQYALHSGRIGGTTQSAA
QRATVVQLQRADR*
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mRNA from alignment at A-nodosum_M_contig1082:181714..183049+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1082.5.1 ID=mRNA_A-nodosum_M_contig1082.5.1|Name=mRNA_A-nodosum_M_contig1082.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1336bp|location=Sequence derived from alignment at A-nodosum_M_contig1082:181714..183049+ (Ascophyllum nodosum dioecious)
AGCACTCAAAAAGGGGTGCGGGAAAAAGTGGCGGACTTCGTGCAACGCAC
GAGCTGCATAAACCATGGTTACTTAAACCGGGCGAGACGGATGCGAGCGT
AGTTACTTTGACAGAATTCGTGGTGTTACGGTGTTTCACCGTCAAGAATC
AAAGCACAATCATCCGAGGTCACTTGGCAGCAATTAGGTAATACCAAAAG
AATGTTGGGGGTTGGGGTTGCCCACGGACCACCGCATGGTCCTAGCGATT
CGAGAAGAGATAGATCGCGCGCGTGCAGGTAGATCCGACGCGGCCACGAG
TTTAATAAATTTATATATATATATATATATATATATATATATATTGAACG
CATATAAGCCCTGTGAGCATCCACCTTCAGGGGGAAAATATCTAAAGGCT
TAGGTGGGAACAGTGGCTGTAGAGACAAAACCGCTTCATGGTATCAAACG
GGTTCCCCAATGTAACCACATCGGTTCAACAGTATAATATCAAAGAGAAG
CCCTTCGTTGTACTGTACACTAGTTGTCAGTAGTAGGGATGGCTTGCGCT
GGCTTATCACCTACTGTGCAGGTTCTCAGAGATTTGGGCGGACGGGAACG
GTCTAGTGCACCCTGATTTCTGTCTCACGATGAGGAAGCCATTGTTGTTT
AGGGGAACGATGCAACTAGACCGGAAGATTAGGCGGCAGGTGGACAAGGT
AGAGGTAACGTTGCCGGGCGAAAAGTCCGACCGGAATCGACTCGGTTCAG
TGCTACCGAAAACCAGAGTAGTAAGATGGGGACGAGGAGGATGTCAGAAG
TAAAGGGGTGCTAGAGATCTTGCTCGATCTGCTGGATGTCTATCCCACCT
TGGACGGGGCGGCACCACTCATCATGCAGACGTACTCCGTAGCTGGATGG
AGGGTAGTTGACCGCAGTGAGGTCACCCACGCTTTGCGCATGATCGCAGA
TGGCAGGGGAAGGGATCATTTGCAGTACGCTTTGCACTCGGGGAGAATCG
GTGGCACCACGCAATCAGCGGCACAAAGGGCTACGGTTGTCCAATTACAA
AGGGCGGATAGATGAAAATCCTAAGCGTTAATGGTATGCGTCAGAATTGG
CGAACAAGGGGCGGATTTCGTTTCTCAGGCGTTAACGCATTAGATGGCAA
CTAGGATGTAGACAAAGGAGAGATATGATGTGGTAAGGTCGGGCTTGCCC
AATGGAGTAAGTGTAGGGACCAGTTTCCGGGTTATCTGGAGTTGGAAGCG
TAAACTAGTGTGCGGGTTAGCCTGAAGTGTTATTCGTTGTTTTCTGGGAA
GCGGAGTTTTACCTCCCGACGCCCATTGTACCCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1082:181714..183049+

>mRNA_A-nodosum_M_contig1082.5.1 ID=mRNA_A-nodosum_M_contig1082.5.1|Name=mRNA_A-nodosum_M_contig1082.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=192bp|location=Sequence derived from alignment at A-nodosum_M_contig1082:181714..183049+ (Ascophyllum nodosum dioecious)
ATGCAGACGTACTCCGTAGCTGGATGGAGGGTAGTTGACCGCAGTGAGGT
CACCCACGCTTTGCGCATGATCGCAGATGGCAGGGGAAGGGATCATTTGC
AGTACGCTTTGCACTCGGGGAGAATCGGTGGCACCACGCAATCAGCGGCA
CAAAGGGCTACGGTTGTCCAATTACAAAGGGCGGATAGATGA
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