mRNA_A-nodosum_M_contig1082.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1082.3.1
Unique NamemRNA_A-nodosum_M_contig1082.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1082.3.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 9.710e-23
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:   37 EALLPLDVPAGYSLVSSAPTALTRALVNQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGSWARL 312
            E  L +D+P G+ L +S P+AL ++LV + +L++LG+GWF GVI+R+A   + D YD+RV L +DGSTRS+KLPL  YS D  A  GSW  L
Sbjct: 1875 EESLEMDIPDGFQLQASPPSALDQSLVKRGVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTDEDAGVGSWVLL 1966
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BLAST of mRNA_A-nodosum_M_contig1082.3.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.430e-21
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:    7 LDIGDDVADDEALLPLDVPAGYSLVSSAPTALTRALVNQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGSWARLSR 318
            +D  D +  D+ +  +++P G+ + +S P AL   L+ + +L+RLGMGWF G+ITR++Q RT   YD+RV L+ D STR +KL L  Y  D  A  GSW  L R
Sbjct:    7 VDDDDSMESDDEIRAMEIPDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILLER 110
[Close]
BLAST of mRNA_A-nodosum_M_contig1082.3.1 vs. uniprot
Match: A0A6H5KHK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK5_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 4.780e-21
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   52 LDVPAGYSLVSSAPTALTRALVNQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGSW 303
            +++PAG+ +  + P AL R L+ + +L RLGMGWFRG+IT+++Q  T   YD+ + LE D STR +KLPL KYS D  AA GSW
Sbjct:   77 MEIPAGFRIQEAKPVALDRLLLRRGVLARLGMGWFRGLITQQSQKDTRHLYDYCMQLELDQSTRKMKLPLDKYSGDSDAAVGSW 160
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BLAST of mRNA_A-nodosum_M_contig1082.3.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.040e-21
Identity = 46/95 (48.42%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:   34 DEALLPLDVPAGYSLVSSAPTALTRALVNQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGSWARLSR 318
            D+ +  +++P G+ + +S P AL  +L+ + +L+RLGMGWF GVITR++Q RT   YD+RV L+ D STRS+KLPL  Y  D  A  GSW  L R
Sbjct:  546 DDEIRAMEIPDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILLER 640
[Close]
BLAST of mRNA_A-nodosum_M_contig1082.3.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 8.320e-21
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:   52 LDVPAGYSLVSSAPTALTRALVNQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGSWARL 312
            +++PAG+ +  + P AL R L+ + +L+RLGMGWF G+IT++ Q  T   YD+ V LE D STR +KLPL KYS D  AA GSW  L
Sbjct:   37 MEIPAGFRIQDAKPVALGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLL 123
[Close]
BLAST of mRNA_A-nodosum_M_contig1082.3.1 vs. uniprot
Match: A0A6H5K5W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W3_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.460e-20
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:   52 LDVPAGYSLVSSAPTALTRALVNQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGSW 303
            +++PAG+ +  + P AL R L+ +E+L R+GMGWF G+IT ++Q  T   YD+ V LE D STR +K PL KYS D  AA GSW
Sbjct:   19 MEIPAGFRIQEAKPVALDRLLLRREVLFRVGMGWFGGLITEQSQKDTRHLYDYCVQLELDQSTRKMKSPLDKYSGDSDAAVGSW 102
[Close]
BLAST of mRNA_A-nodosum_M_contig1082.3.1 vs. uniprot
Match: A0A6H5K4S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.320e-19
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   52 LDVPAGYSLVSSAPTALTRALVNQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGSW 303
            +++PAG+ +  + P AL R L+ + +L+RLGMGWF G+IT+++Q  T   YD+ V LE D STR +KLPL KYS D  AA GSW
Sbjct:  188 MEIPAGFRIQEAKPVALDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSW 271
[Close]
BLAST of mRNA_A-nodosum_M_contig1082.3.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.650e-19
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:    7 LDIGDDVADDEALLPLDVPAGYSLVSSAPTALTRALVNQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGSWARLSRC 321
            +D  D +  D+ +  +++P G+ + +  P A+  +L+ + +L+RLGMGWF GVITRK+Q RT   YD+RV L+ D ST S+KLPL  Y     A  GSW  L R 
Sbjct:  252 VDDDDSMESDDEIHAMEIPDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMYRGVPDAVVGSWILLGRA 356
[Close]
BLAST of mRNA_A-nodosum_M_contig1082.3.1 vs. uniprot
Match: A0A6H5KLT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT3_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.980e-19
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:   52 LDVPAGYSLVSSAPTALTRALVNQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGSWARL 312
            +++PAG+ L  S P AL R L+ + +L+RLGMGWF G+I +++  R    YD+ V LE D STR+VKLPL KYS D  AA GSW  L
Sbjct:   43 MEIPAGFRLQESTPAALDRLLLQRGVLVRLGMGWFGGLIIQQSPQR--HLYDYCVQLEVDHSTRNVKLPLDKYSGDPDAAVGSWVLL 127
[Close]
BLAST of mRNA_A-nodosum_M_contig1082.3.1 vs. uniprot
Match: A0A6H5JYC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC4_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.070e-19
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:   25 VADDEALLPLD---------VPAGYSLVSSAPTALTRALVNQEILLRLGMGWFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGSWARL 312
            V DD+++ P D         +PAG+ +  + P AL R L+ + +L+RLGMGWF G+IT+++Q  T   YD+ V LE D STR +KLPL KYS D  AA GSW  L
Sbjct:  304 VDDDDSMDPQDPEDEIQGMEIPAGFRIQEANPVALDRLLLRRGVLVRLGMGWFGGLITQQSQKDTRHVYDYCVQLELDQSTRKIKLPLDKYSRDSDAAVGSWVLL 408
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1082.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE9.710e-2351.09Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KHL7_9PHAE1.430e-2143.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHK5_9PHAE4.780e-2151.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN2_9PHAE5.040e-2148.42C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KA94_9PHAE8.320e-2150.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5W3_9PHAE1.460e-2050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4S7_9PHAE1.320e-1951.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5J8_9PHAE1.650e-1942.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLT3_9PHAE1.980e-1951.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYC4_9PHAE2.070e-1946.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1082contigA-nodosum_M_contig1082:89842..90228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FI08
PFAMsDDE_1
Model size387
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.09e-17
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866468.8938115-CDS-A-nodosum_M_contig1082:89841..902281680866468.8938115-CDS-A-nodosum_M_contig1082:89841..90228Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1082 89842..90228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1082.3.1prot_A-nodosum_M_contig1082.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1082 89842..90228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1082.3.1

>prot_A-nodosum_M_contig1082.3.1 ID=prot_A-nodosum_M_contig1082.3.1|Name=mRNA_A-nodosum_M_contig1082.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=129bp
ATLDIGDDVADDEALLPLDVPAGYSLVSSAPTALTRALVNQEILLRLGMG
WFRGVITRKAQARTSDRYDFRVFLETDGSTRSVKLPLAKYSVDGAAAEGS
WARLSRCIDEHSSEDSENEREEEFEDEFG
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mRNA from alignment at A-nodosum_M_contig1082:89842..90228+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1082.3.1 ID=mRNA_A-nodosum_M_contig1082.3.1|Name=mRNA_A-nodosum_M_contig1082.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at A-nodosum_M_contig1082:89842..90228+ (Ascophyllum nodosum dioecious)
GCTACGCTGGACATCGGCGACGACGTCGCTGATGACGAGGCCTTGCTGCC
GCTTGACGTCCCTGCTGGTTATTCTCTTGTGAGCTCAGCACCTACCGCCC
TCACTCGGGCACTCGTCAACCAAGAGATTCTGCTTCGGCTTGGTATGGGC
TGGTTCAGGGGGGTAATcaCACGGAAAGCTCAAGCACGCACGAGCGACCG
CTACGACTTCAGAGTGTTTCTCGAGACCGACGGCAGCACACGCAGTGTAA
AACTTCCGCTAGCGAAGTACTCGGTGGACGGGGCTGCGGCGGAGGGATCT
TGGGCGCGGCTATCGCGCTGCATCGACGAGCATTCTTCAGAAGACAGCGA
GAACGAGCGCGAGGAGGAGTTCGAAGACGAGTTCGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1082:89842..90228+

>mRNA_A-nodosum_M_contig1082.3.1 ID=mRNA_A-nodosum_M_contig1082.3.1|Name=mRNA_A-nodosum_M_contig1082.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=387bp|location=Sequence derived from alignment at A-nodosum_M_contig1082:89842..90228+ (Ascophyllum nodosum dioecious)
GCTACGCTGGACATCGGCGACGACGTCGCTGATGACGAGGCCTTGCTGCC
GCTTGACGTCCCTGCTGGTTATTCTCTTGTGAGCTCAGCACCTACCGCCC
TCACTCGGGCACTCGTCAACCAAGAGATTCTGCTTCGGCTTGGTATGGGC
TGGTTCAGGGGGGTAATcaCACGGAAAGCTCAAGCACGCACGAGCGACCG
CTACGACTTCAGAGTGTTTCTCGAGACCGACGGCAGCACACGCAGTGTAA
AACTTCCGCTAGCGAAGTACTCGGTGGACGGGGCTGCGGCGGAGGGATCT
TGGGCGCGGCTATCGCGCTGCATCGACGAGCATTCTTCAGAAGACAGCGA
GAACGAGCGCGAGGAGGAGTTCGAAGACGAGTTCGGG
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