mRNA_A-nodosum_M_contig1081.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1081.5.1
Unique NamemRNA_A-nodosum_M_contig1081.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1081.5.1 vs. uniprot
Match: A0A6H5KW50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW50_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.180e-5
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 2 
Query:  344 CKTEGCGKLPSFGVAGTKTREYCAQHAKDGMVDV 445
            CK  GC K+ SFGV GT+T EYCA HAKDGM++V
Sbjct:    4 CKQHGCSKVGSFGVQGTRTAEYCATHAKDGMLNV 37
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BLAST of mRNA_A-nodosum_M_contig1081.5.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.880e-5
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 2 
Query:  341 KCKTEGCGKLPSFGVAGTKTREYCAQHAKDGMVDVKN 451
            +C  E C K P++GVAG+K RE+C+QHA+DGMV+V N
Sbjct:   63 QCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNN 99
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BLAST of mRNA_A-nodosum_M_contig1081.5.1 vs. uniprot
Match: D8LFL2_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL2_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 4.760e-5
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 2 
Query:  302 HAKDGMVIIRSKR-KCKTEGCGKLPSFGVAGTKTREYCAQHAKDGMVDV 445
            H +D  +I + K  +C  EGCGK+ SFG AG+K RE+CA HA   MVD+
Sbjct:   12 HVQDDRMIDKKKNARCGHEGCGKVASFGAAGSKKREFCAPHAPRSMVDL 60
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1081.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KW50_9PHAE2.180e-567.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT00_9PHAE2.880e-559.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFL2_ECTSI4.760e-551.02EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1081contigA-nodosum_M_contig1081:99687..100900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LFL2
Model size753
Max annot lvl2880.D8LFL2|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.67e-05
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866468.0067458-CDS-A-nodosum_M_contig1081:99686..1001211680866468.0067458-CDS-A-nodosum_M_contig1081:99686..100121Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1081 99687..100121 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866468.0778089-UTR-A-nodosum_M_contig1081:100121..1001361680866468.0778089-UTR-A-nodosum_M_contig1081:100121..100136Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1081 100122..100136 -
1680866468.0898933-UTR-A-nodosum_M_contig1081:100599..1009001680866468.0898933-UTR-A-nodosum_M_contig1081:100599..100900Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1081 100600..100900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1081.5.1prot_A-nodosum_M_contig1081.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1081 99687..100121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1081.5.1

>prot_A-nodosum_M_contig1081.5.1 ID=prot_A-nodosum_M_contig1081.5.1|Name=mRNA_A-nodosum_M_contig1081.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=145bp
MVIIRSKRKCKTEGCGKLPSFGVAGTKTREYCAQHAKDGMVDVKNRKCKT
DVCSKCPSFGVAGTKTAEYCAQHARDGMVDVRHGNTKTGGGGKHPSFGVP
GKETHEFCSRYSPHGMVNVKKRRRTTGDYSIGRLSVKECRGLDIG
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mRNA from alignment at A-nodosum_M_contig1081:99687..100900-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1081.5.1 ID=mRNA_A-nodosum_M_contig1081.5.1|Name=mRNA_A-nodosum_M_contig1081.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1214bp|location=Sequence derived from alignment at A-nodosum_M_contig1081:99687..100900- (Ascophyllum nodosum dioecious)
CCGAAAGCTGTTGCAAGCAGCCGTCGTATGGAGGGGCCGGTACGAAAACA
GCAGAATACTGCGCACAGCACGCCAAGGACGGGATGGTATCTGTTTGGAC
CATTAAGATGTGCAGATGCGATGGCTGCGAAAAGCGTCCTTCGTTTGGGG
TAGCCGGCGCGAAAACGGCAGAATACTGCACACAGCACGCCAAGGACGGG
ATGGTATCTGTCTGGACCATTAAGATTTGCAGATTCGATGGCTGCGAAAA
GCATCCTTCGTTTGGGGTAGCCGGCACGAAAACGGCAGAATACTGCGCAC
AGCACGCCAAAGACGGGATGATCGCAGTGTACAGCAAAAAGTGCAAAAGC
GAAGGCTGCGGCAAATATCCTTCGTTTGGGGTAGCCGGTACGAAAACGGC
GGAATACTGCGCACAGCACGCCAAGGATGGGATGGTCAATGTCCGCAGCA
GCAGAAAGTGCAGAACCGAAGGCTGTGGCAAGTGTCCATCGTTTAGAGTG
GCCGGTACGAAAACGGCGGAATACTGCGCACAGCACTCCAAGGACGGGAT
GGTCAACGTGTACAGCAGAAAGTGCAAAACCGATGACTGTGGCAAGTGGC
CATCGTTCGGAGTGGCCGGTACGAAAATGGCGGAATACTGCGCACAGCAT
GCCAAGGGCGGAATGGTCATCATCCGCAGCATAAGAAAGTGCAAAACCGA
AGGCTGCGACATGCATCCGTCGTTTAAAGTGGCCGGTACGAAAACGGCGG
AATATTGCGCGCAGCACGCCAAAGACGGGATGGTCATCATCCGCAGCAAA
AGAAAGTGCAAAACCGAAGGCTGTGGCAAGCTTCCGTCGTTCGGAGTGGC
CGGTACGAAAACGAGAGAATACTGCGCACAGCACGCCAAGGACGGAATGG
TCGACGTGAAAAACAGGAAGTGCAAAACCGATGTCTGCAGCAAGTGTCCT
TCGTTTGGGGTAGCCGGCACCAAAACGGCTGAATACTGCGCGCAGCACGC
CCGGGACGGGATGGTCGACGTCCGCCACGGAAATACTAAAACTGGAGGCG
GTGGCAAGCATCCGTCGTTTGGAGTGCCGGGCAAAGAAACGCATGAATTC
TGTTCACGGTACTCCCCGCACGGGATGGTTAACGTGAAAAAGAGGAGGCG
TACTACTGGGGACTACTCTATAGGAAGACTCAGTGTTAAAGAGTGCAGGG
GGCTAGATATTGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1081:99687..100900-

>mRNA_A-nodosum_M_contig1081.5.1 ID=mRNA_A-nodosum_M_contig1081.5.1|Name=mRNA_A-nodosum_M_contig1081.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=435bp|location=Sequence derived from alignment at A-nodosum_M_contig1081:99687..100900- (Ascophyllum nodosum dioecious)
ATGGTCATCATCCGCAGCAAAAGAAAGTGCAAAACCGAAGGCTGTGGCAA
GCTTCCGTCGTTCGGAGTGGCCGGTACGAAAACGAGAGAATACTGCGCAC
AGCACGCCAAGGACGGAATGGTCGACGTGAAAAACAGGAAGTGCAAAACC
GATGTCTGCAGCAAGTGTCCTTCGTTTGGGGTAGCCGGCACCAAAACGGC
TGAATACTGCGCGCAGCACGCCCGGGACGGGATGGTCGACGTCCGCCACG
GAAATACTAAAACTGGAGGCGGTGGCAAGCATCCGTCGTTTGGAGTGCCG
GGCAAAGAAACGCATGAATTCTGTTCACGGTACTCCCCGCACGGGATGGT
TAACGTGAAAAAGAGGAGGCGTACTACTGGGGACTACTCTATAGGAAGAC
TCAGTGTTAAAGAGTGCAGGGGGCTAGATATTGGC
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